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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020397 ID=TCONS_00020397|Name=TCONS_00020397|organism=Clytia hemisphaerica|type=transcript|length=1830bp
AACAGatgacggtattttggtgttttaacCGTCGTCGAGGAAAGTGGACA
GCGATTTTGgtgacatgtcaactttgctttatacagTCTCCTTCGATTtt
tctcgaatacataaactcgcttgcaagtctgcaaccgcagtcgaaggcga
cccgaaggctcctctttcaataGCTGTCTACCGAAAAGGATGGCAAGGGA
GGGTGCTGTTCTTTCTCCTAGATTTCTCAACTTACCCTTGAACCTTCTCT
TAATTGCACgagagacatcaagtaccatATTTGTACTAAGTACGAAGTCT
ATTGTATGAACAGGCTGGGATCGATCCTTATTAAAGAAGACTTTCATTTT
GGCGTAAAGAAATAACTATCTTGTCAAATATTTAACAAGCCTTTCAAATT
AAACGAAATATCTCCTCGAAGCTATCCAAGGCTAAATGCTACTAATATTA
CAAAGTGTTATTAGGGTTACGTCAAAGACAAGAATCCCAAAAGCTCATAC
CAATATTCAgttccaaaacaaaaatgttatcGTCAGTTCATTCATTCAAA
GACATGCTTCTGACGTAAAATGCTAAACAGATCCAGTGAAATATTTACAA
TCCTATAAGTATTTAAATAATAGTCTAAAATCTATTTAAAAGTAATTATA
TTGTTCTTTGTCGTCAAACGAGAGTTTTTACAAGCGTCATTATGATTTGG
TTGATCGCTAGTCTTAAAAGACGAAGTCTCTTTATGTATAGTcggctctc
tctaattcgaacgtctGTAATTCGAATTCAAGATCCTAATCCGTTCTTTA
ACAgagatgaaatgaaattgttagCGTAGTTGGTTATACAGTTTACAATT
TCCACGAAAACTGTTAGAGTTTGAAAGCTCGATAGGCGACAAATGAACAC
TGGGATAACGCCTTGCTTTCCAACAATAATAGCAGAATAGGAGAAAGGAA
ACGAATAACAACAAGGCCATCACTATGACGACAATCATGAATAAGACTTC
TTGGATATAGCAGTGTTTGTAATGCCATTCATTGAAATGGCAATCTTCAG
GGAAAACATCTTGCCAGTGGTATTCGCCACATTTCTCTGTGTGACCGCAC
CAGTAACAGTTGGTTGCTTGGAGACAAGTAGTGCATGTATGGTATTTCGA
GCAATGGTTGTCTCCTGATGTGTTTCTTTTGGCGGGATGATGGGCGTGCG
GATGTGTATGGTGGGCGTGGTAGCGTTTTGTGGTTGGTGTTTTTGTGGTG
AGAAGGCTTTCTGCTATACTGTCTATTTTAGGTTTTGGAGGTTTAATCTT
CTTTGGTGTGGGTTTAGggtgttttttgttgtttcttgtaATCGTAGTTT
TCTTCGTGGGGAGTATAGTTCTGAGTGGATTTGTATGGTGGTGCAATGCT
GCTTTTGTAGAAGTTTTCTCTGGTTGTTGTACCGGGTTTTTCACTGTCTT
GTCTGTTGGAGATGTAGGTACGAGTGAAATTGTGTGATATTCATGTTTTC
CTTCCGTAGATGCTTGCGTACTCAAAGCCGGCAAGGTGGCTGTAGCGCTT
TTTCTCTCACCAATATAAGCGTTTGATATGGAGCTTATAGCAAACAAGAC
TAAGAGTGAGATGTTTGGGTTTCTCAGCTTCAGCATTGTTGATTGTATGA
CTTCAATATTCTTCCGACCTTTCCAAGATGCAGTTCCTCTACAAATGATA
ACTTTATCATAACATGTTACAGACTTTGGTTCCAACTGTATTTATTATTC
GTCTgtcttgattgattgatttggttcctggaaaataaattaaatggaca
aaaataaaactatgacgtcatcgagtgatc Run BLAST on NCBI protein sequence of TCONS_00020397-protein >TCONS_00020397-protein ID=TCONS_00020397-protein|Name=TCONS_00020397-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MLKLRNPNISLLVLFAISSISNAYIGERKSATATLPALSTQASTEGKHEY
HTISLVPTSPTDKTVKNPVQQPEKTSTKAALHHHTNPLRTILPTKKTTIT
RNNKKHPKPTPKKIKPPKPKIDSIAESLLTTKTPTTKRYHAHHTHPHAHH
PAKRNTSGDNHCSKYHTCTTCLQATNCYWCGHTEKCGEYHWQDVFPEDCH
FNEWHYKHCYIQEVLFMIVVIVMALLLFVSFLLFCYYCWKARRYPSVHLS
PIELSNSNSFRGNCKLYNQLR Run BLAST on NCBI transcript from alignment at sc0000355:199394..201223 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020397 ID=TCONS_00020397|Name=TCONS_00020397|organism=Clytia hemisphaerica|type=transcript|length=1830bp|location=Sequence derived from alignment at sc0000355:199394..201223 (Clytia hemisphaerica)
gatcactcgatgacgtcatagttttatttttgtccatttaatttattttc
caggaaccaaatcaatcaatcaagacAGACGAATAATAAATACAGTTGGA
ACCAAAGTCTGTAACATGTTATGATAAAGTTATCATTTGTAGAGGAACTG
CATCTTGGAAAGGTCGGAAGAATATTGAAGTCATACAATCAACAATGCTG
AAGCTGAGAAACCCAAACATCTCACTCTTAGTCTTGTTTGCTATAAGCTC
CATATCAAACGCTTATATTGGTGAGAGAAAAAGCGCTACAGCCACCTTGC
CGGCTTTGAGTACGCAAGCATCTACGGAAGGAAAACATGAATATCACACA
ATTTCACTCGTACCTACATCTCCAACAGACAAGACAGTGAAAAACCCGGT
ACAACAACCAGAGAAAACTTCTACAAAAGCAGCATTGCACCACCATACAA
ATCCACTCAGAACTATACTCCCCACGAAGAAAACTACGATtacaagaaac
aacaaaaaacaccCTAAACCCACACCAAAGAAGATTAAACCTCCAAAACC
TAAAATAGACAGTATAGCAGAAAGCCTTCTCACCACAAAAACACCAACCA
CAAAACGCTACCACGCCCACCATACACATCCGCACGCCCATCATCCCGCC
AAAAGAAACACATCAGGAGACAACCATTGCTCGAAATACCATACATGCAC
TACTTGTCTCCAAGCAACCAACTGTTACTGGTGCGGTCACACAGAGAAAT
GTGGCGAATACCACTGGCAAGATGTTTTCCCTGAAGATTGCCATTTCAAT
GAATGGCATTACAAACACTGCTATATCCAAGAAGTCTTATTCATGATTGT
CGTCATAGTGATGGCCTTGTTGTTATTCGTTTCCTTTCTCCTATTCTGCT
ATTATTGTTGGAAAGCAAGGCGTTATCCCAGTGTTCATTTGTCGCCTATC
GAGCTTTCAAACTCTAACAGTTTTCGTGGAAATTGTAAACTGTATAACCA
ACTACGctaacaatttcatttcatctcTGTTAAAGAACGGATTAGGATCT
TGAATTCGAATTACagacgttcgaattagagagagccgACTATACATAAA
GAGACTTCGTCTTTTAAGACTAGCGATCAACCAAATCATAATGACGCTTG
TAAAAACTCTCGTTTGACGACAAAGAACAATATAATTACTTTTAAATAGA
TTTTAGACTATTATTTAAATACTTATAGGATTGTAAATATTTCACTGGAT
CTGTTTAGCATTTTACGTCAGAAGCATGTCTTTGAATGAATGAACTGACg
ataacatttttgttttggaacTGAATATTGGTATGAGCTTTTGGGATTCT
TGTCTTTGACGTAACCCTAATAACACTTTGTAATATTAGTAGCATTTAGC
CTTGGATAGCTTCGAGGAGATATTTCGTTTAATTTGAAAGGCTTGTTAAA
TATTTGACAAGATAGTTATTTCTTTACGCCAAAATGAAAGTCTTCTTTAA
TAAGGATCGATCCCAGCCTGTTCATACAATAGACTTCGTACTTAGTACAA
ATatggtacttgatgtctctcGTGCAATTAAGAGAAGGTTCAAGGGTAAG
TTGAGAAATCTAGGAGAAAGAACAGCACCCTCCCTTGCCATCCTTTTCGG
TAGACAGCtattgaaagaggagccttcgggtcgccttcgactgcggttgc
agacttgcaagcgagtttatgtattcgagaaaAATCGAAGGAGActgtat
aaagcaaagttgacatgtcacCAAAATCGCTGTCCACTTTCCTCGACGAC
GgttaaaacaccaaaataccgtcatCTGTT Coding sequence (CDS) from alignment at sc0000355:199394..201223 >TCONS_00020397 ID=TCONS_00020397|Name=TCONS_00020397|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at sc0000355:199394..201223 (Clytia hemisphaerica)
ATGCTGAAGCTGAGAAACCCAAACATCTCACTCTTAGTCTTGTTTGCTAT
AAGCTCCATATCAAACGCTTATATTGGTGAGAGAAAAAGCGCTACAGCCA
CCTTGCCGGCTTTGAGTACGCAAGCATCTACGGAAGGAAAACATGAATAT
CACACAATTTCACTCGTACCTACATCTCCAACAGACAAGACAGTGAAAAA
CCCGGTACAACAACCAGAGAAAACTTCTACAAAAGCAGCATTGCACCACC
ATACAAATCCACTCAGAACTATACTCCCCACGAAGAAAACTACGATtaca
agaaacaacaaaaaacaccCTAAACCCACACCAAAGAAGATTAAACCTCC
AAAACCTAAAATAGACAGTATAGCAGAAAGCCTTCTCACCACAAAAACAC
CAACCACAAAACGCTACCACGCCCACCATACACATCCGCACGCCCATCAT
CCCGCCAAAAGAAACACATCAGGAGACAACCATTGCTCGAAATACCATAC
ATGCACTACTTGTCTCCAAGCAACCAACTGTTACTGGTGCGGTCACACAG
AGAAATGTGGCGAATACCACTGGCAAGATGTTTTCCCTGAAGATTGCCAT
TTCAATGAATGGCATTACAAACACTGCTATATCCAAGAAGTCTTATTCAT
GATTGTCGTCATAGTGATGGCCTTGTTGTTATTCGTTTCCTTTCTCCTAT
TCTGCTATTATTGTTGGAAAGCAAGGCGTTATCCCAGTGTTCATTTGTCG
CCTATCGAGCTTTCAAACTCTAACAGTTTTCGTGGAAATTGTAAACTGTA
TAACCAACTACGctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020397-exon-sc0000355-1491911889:199394..201223 | TCONS_00020397-exon-sc0000355-1491911889:199394..201223 | Clytia hemisphaerica | exon |
| TCONS_00020397-exon-sc0000355-1510915933:199394..201223 | TCONS_00020397-exon-sc0000355-1510915933:199394..201223 | Clytia hemisphaerica | exon |
| TCONS_00020397-exon-sc0000355-1575043694:199394..201223 | TCONS_00020397-exon-sc0000355-1575043694:199394..201223 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000355 | supercontig | sc0000355:199394..201223 . |
Blast
The following BLAST results are available for this feature:
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