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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020402 ID=TCONS_00020402|Name=TCONS_00020402|organism=Clytia hemisphaerica|type=transcript|length=527bp
tcaggACGACGTGTGAAAGCACGTGATGACGGAAGGCTTTTTGGATTCAA
GTAAAGGAGTAGATGCAGAGTAGAGAAGCTGTTGTTATCGTTAAAGATTT
GCTGCAGAAAGTTTGGTTTTGAGGTTGAAAAAGAGTTCTTCAAAGCGAAA
AAACTCTGGAAACCTCACTTCGTGCTCACAACTGGACAACTTGTTCACAC
AATGTGTGAGATATAAATTGGAGCTTCAAGCTAAAATTCACTTGGAGACT
TGATACGAAACCAGCTGGCAAACAccattgtttcaacgtccatcctGCGT
AAAGAGTCAATCCTCAAagtacaaattttcattttatatggaatgtgtgg
taaaacatttgtAGATCTTCGCCCCAACAAATTATTCTGTTCTTGCCTCG
ACGCTTTTCTCCTACAAAACCTTGGAATTGCAACGTACACTTTCAGAGAC
TTGAAAAGCGTATTTATAGCTTTAGGGCTCCAATTAATTACTACATATCT
CATTataacccctgtctcacagtcccg Run BLAST on NCBI transcript from alignment at sc0000356:5281..6978+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020402 ID=TCONS_00020402|Name=TCONS_00020402|organism=Clytia hemisphaerica|type=transcript|length=1698bp|location=Sequence derived from alignment at sc0000356:5281..6978+ (Clytia hemisphaerica)
tcaggACGACGTGTGAAAGCACGTGATGACGGAAGGCTTTTTGGATTCAA
GTAAAGGAGTAGATGCAGAGTAGAGAAGCTGTTGTTATCGTTAAAGATTT
GCTGCAGAAAGTTTGGTTTTGAGGTACCttttattttactattttcttCT
GGCTTAAGGTTTAAAATCTTCCCTTCTAAATATATAGCGGTAGGCAAAAA
TTTAGAGGCAACTTTCTGCCTTTGTGGTTTTTTATTCAGGCTGAAAGCGT
GGGGTAAATCATTAAAGAATTGACGCACTAGATCTGGATACACTTTTTTC
AGTACTCTTTTGAAATATTGTATTGTATTAGAATTAGAATTTATGTCTCT
TAAAAACTTTATCAGGACGTTGGCAACACACATATCTCAAAGAGAACTCT
ACTAGAAAAGAATTTATTCAGCTAATGACACCTGAAGCGGGCTGtaaaca
tattttcaaatattaatttaGAAGGTGATTCCTTGTAACCAATTTTTCAG
TTtaacaaatttgtatttttttagccATCTATTATTAATATTTACAATAT
ATTTGACCACAAAGACTTAATTTTCACCGGAACATCTCTATTCGTATTTC
TAagcagggtcggatacaggaggtaggctatcttattcatggagNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNccccccccgtctattcgggaga
caagagtatatGAGCTATACAGAATTCTATTTTTTATGCGATATGAAAGT
TCTTGTTTTTTAAACAATGTATTGTGGATATAGTATAAGAAAACCCTATG
GTATGAACGGTGTTTGGAATATCAACTTTAACACTCAAAATTGATTTCCA
AGATCAACAAATACGCCAAAGTCTCCAAAAGAGTTTTAATTCTACTGTGG
TTGTGTTTATGTTCCACAATGAGTTAATTAAGTTGAAGGGGGTTTACCAA
TTTTTATAAAGTCAAGTCTCCAGTTTCCATGTTTTCTTGTTCCTGCTTAT
ATATTCCTTTTTAGGTCACAGGAAAGGAGTTGGTGAAAGTATTCCTGATC
TCTTTGGCAAACGATGTATGATTGAtgtatcaattttatttcaGGTTGAA
AAAGAGTTCTTCAAAGCGAAAAAACTCTGGAAACCTCACTTCGTGCTCAC
AACTGGACAACTTGTTCACACAATGTGTGAGATATAAATTGGAGCTTCAA
GCTAAAATTCACTTGGAGACTTGATACGAAACCAGCTGGCAAACAccatt
gtttcaacgtccatcctGCGTAAAGAGTCAATCCTCAAagtacaaatttt
cattttatatggaatgtgtggtaaaacatttgtAGATCTTCGCCCCAACA
AATTATTCTGTTCTTGCCTCGACGCTTTTCTCCTACAAAACCTTGGAATT
GCAACGTACACTTTCAGAGACTTGAAAAGCGTATTTATAGCTTTAGGGCT
CCAATTAATTACTACATATCTCATTataacccctgtctcacagtcccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020402-exon-sc0000356-1491911889:5281..5403 | TCONS_00020402-exon-sc0000356-1491911889:5281..5403 | Clytia hemisphaerica | exon |
| TCONS_00020402-exon-sc0000356-1510915933:5281..5403 | TCONS_00020402-exon-sc0000356-1510915933:5281..5403 | Clytia hemisphaerica | exon |
| TCONS_00020402-exon-sc0000356-1575043694:5281..5403 | TCONS_00020402-exon-sc0000356-1575043694:5281..5403 | Clytia hemisphaerica | exon |
| TCONS_00020402-exon-sc0000356-1491911889:6575..6978 | TCONS_00020402-exon-sc0000356-1491911889:6575..6978 | Clytia hemisphaerica | exon |
| TCONS_00020402-exon-sc0000356-1510915933:6575..6978 | TCONS_00020402-exon-sc0000356-1510915933:6575..6978 | Clytia hemisphaerica | exon |
| TCONS_00020402-exon-sc0000356-1575043694:6575..6978 | TCONS_00020402-exon-sc0000356-1575043694:6575..6978 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000356 | supercontig | sc0000356:5281..6978 + |
Blast
The following BLAST results are available for this feature:
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