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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020414 ID=TCONS_00020414|Name=TCONS_00020414|organism=Clytia hemisphaerica|type=transcript|length=949bp
TGCAGAATCACCAGTCGAATGTATATTAGAATGTCAAAAAGTATTGACAT
GTGGGTATTTTGTTGACACGACAAAAACCTGTTTCTGCATGAAGAATGAa
gatcaaaagattttttcaattgaagatgaaaatctAAATGGAACGTTTTA
TCAACAGGACCAACAGGGTAGTGTTTGCCCAGATATACAAAGAAAGAGTT
GTCAAAAAGTGAAAGAAGACTGCCCAACAAGCCCATCAGGTTTTTATCAC
ATTGAAATCGATGGTCAAATAGTGAAGGCGTTTTGTGACTTAGAAGTTGA
AGGAGGTGGTTGGCTCGGTATAGCAAATATCACTTTCAACGATGCAAGTA
TTATGCAAATTTATCTTGGCTACGTAAATAACGAAGCACCTGTTTCAGAC
CTCCAAAATATAGGGGATGGCAAATTCATGTTGGACGGACAAGTTGTTAA
GAGGTTGTTCACTGAACATGGCTATACAGAAGTTCGAGGtaaatgcttca
aaaattggCATGGTCGGACACtgcattttattttgtttggaGAAGAAACG
GTCAAATACATGAGGAAGGAAGAAATGACGACGCATGGTTCATGCCAAAA
GGCCCGATATTTGTCGGACGACACATCTTATACGGCTCGAACTGATTGTT
CAACAATTTGGATTGGCTATGGGCTAAGTCATCCTTATCATTATCATTTG
CTTTGGAAAGCTGCAACCTATCATGTTATGTTGCACAACAGATTTGCATG
TGATGATAGTCACTTTTCTAACGCATTCACTAATACTGGATATTGGCTCT
TCTTTGTAAGATAATTTCACTTCTTTCGTACGCATATAGGGGCTTTCCAT
TTTAACGAGTTTActtttagaccatgttcagactttacggtttcgtatcg
tttcgaaacgaaacggttccaaAACAAATGTAACTTCagaattcgaaac Run BLAST on NCBI protein sequence of TCONS_00020414-protein >TCONS_00020414-protein ID=TCONS_00020414-protein|Name=TCONS_00020414-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
AESPVECILECQKVLTCGYFVDTTKTCFCMKNEDQKIFSIEDENLNGTFY
QQDQQGSVCPDIQRKSCQKVKEDCPTSPSGFYHIEIDGQIVKAFCDLEVE
GGGWLGIANITFNDASIMQIYLGYVNNEAPVSDLQNIGDGKFMLDGQVVK
RLFTEHGYTEVRGKCFKNWHGRTLHFILFGEETVKYMRKEEMTTHGSCQK
ARYLSDDTSYTARTDCSTIWIGYGLSHPYHYHLLWKAATYHVMLHNRFAC
DDSHFSNAFTNTGYWLFFVR Run BLAST on NCBI transcript from alignment at sc0000356:229673..234119+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020414 ID=TCONS_00020414|Name=TCONS_00020414|organism=Clytia hemisphaerica|type=transcript|length=4447bp|location=Sequence derived from alignment at sc0000356:229673..234119+ (Clytia hemisphaerica)
TGCAGAATCACCAGTCGAATGTATATTAGAATGTCAAAAAGTATTGACAT
GTGGGTATTTTGTTGACACGACAAAAACCTGTTTCTGCATGAAGAATGAa
gatcaaaagattttttcaattgaagatgaaaatctAAATGGAACGTTTTA
TCAACAGGACCAACAGGTATGAGACCaagggtacacgtttttttttagat
aGTGTTTTTTACCTGAGGGTGAAGTATGCTTAGGAATTTTCTGAATGTGA
GCGTGAATTTTCATAAAGAAATCAATGTTCATCACGAAGAAAACACGAAG
gaattttcgatatttttcatttattagtcTGAGGGTCTGGGGCGGGTCCA
TCACAATATCTTATGTTTTTACATCATGTTAGCGAAAACATTTTACGTAT
AATAAACGCAACAAGTCATCAAAAATTaagctcattttttatttttcctg
cCATATATATTCCTGTTCATTCGAAAAACCCAAACCTCGAGGTATTCTTG
ATATTTAGTTGATTTTCACCCctgaagacttttaaacgggtatagcctat
ttcattacctaactcaagataattcacgcagaagatgctatatatggtca
attttagaccaaaatctGGCGAAAAGttgaacttgcgcatgaaatatcac
GAGCtaggtaaggaaatcggctataaccgtttaaaagtcttttatatagt
tttttcgaGGGCTTTctaatggtatacttgataatgtctgaaaatgagtt
tgaaattttcaaaaaattttgcccttagggttttgcctgggggaaaaaag
aaatgtcccaaaaaaaggatgttccaccagtgggattttaggggattttt
tcctgaggcatagccatcctatagagaaggtcgggagaaagtttcagctg
gatcttaatcttatttttttcctacaaacagcctgtatttttgtaacact
aCCACactaggggtcaaagtagtaacaATTGGGTATAGAGCCTAAAATGC
CTAaaataaaacctaaaaataagaacaggataagaacaattttaaactaa
aaataccaaaagaaATGGGAACAGCCGAgcatcagcaaaattttactggt
tcttataaaaaagtgtaaaccttgaaataacgttgtgtgccagcttggaa
GGACTTACCAAAGAACAAAAACTTAACTCCGTAAGTAACTGCTGTGAGAT
TTGAGCCTGAAGTTATAACAATCCATATTCTCATTCATTTTCTTTAGGGT
AGTGTTTGCCCAGATATACAAAGAAAGAGTTGTCAAAAAGTGAAAGAAGA
CTGCCCAACAAGCCCATCAGGTTTTTATCACATTGAAATCGATGGTCAAA
TAGTGAAGGCGTTTTGTGACTTAGAAGTTGAAGGAGGTAAGGTTGCGTAC
AATAACGCGTTCTGTATAAGAACGGAGtataataagaacataaggcttgg
aTAAAgaatctaagaacattttaaggataTTTTTTAAGCTTGCATGTTCA
TGCTCAAAATATGCGATTTCTTTCagttaaaaacacaaaaaattattcta
aaaagaGGAAAACATTTTAGGCATACACTAATTTttgtaagcataacgtt
tataagcatcccggggggggggggggggaaaaaaaaagcccggggggggg
gggggaaaaaaaaagcccggggggggggggggaaaaaaaaagcccggggg
gggggggggaaaaaaaaagcccggggggggggggggaaaaaaaaagcccg
ggggggggggggggcctaagtgactcccgggggggggggggcaagctaaa
tgactgacgggtatgtgcgggcaccaagggtgtgtttttcaaggtatccg
aaatgcactgtaaagggTGGGTTTTTTGCCGCCTGCACTGTAAAGGTAcg
aatttctaaattctaacaaaaatgaaattgtccagttaaagtttttttaa
gggaTTCAATCGCCTTTACCTaattttttgcaaatattgGATCAAGTACG
TATTGGATCCATTTTTAGAtgcaaaatctttgtttgaccCATTTCAATCA
CTTCAGGGAAAAAAGCTAGACTGCACTTTAAGGGTATTCAACATGGCGaa
agatgcactgtaagggtttattttttggggaaaaccactgcactgtaagg
gtgcgattttgaACGGCAATTTttagcccgcacataccgtcagtccaaaa
tctgactgcccccccccccgggataagcatacttaggctcaaactcagta
aaaaataagcataatgctaagcatacctccaataagctgaaatgcaaaaa
aacttGTGCAGCAtttctaaaacgctgaccttttatggttacttttaaag
ctgtttttgCTTTCTTAGATCAAAGATTTTCGCCTGCAGTGCCAAATTAC
AAAAGAAAGGACGAAGTCTAAGCATAAATTAAAGGCTGAAAATGAGGTTT
TGCTAAACATACTGAGCCTCGACCCAAtttcccgtatgcttataaacaaa
aagagtgtacctggaggtcctataaattaactccTGTTagttcaaaattt
tggatgctcttataaaaaacgtgtaatgcctaaaaagtgagtGACAGTAC
TGCTGACGGAGCGCcaattccgaaaaaaaaataaagaaaagttgCGTGTC
ATCATAtacatttatttataagaacaaaaatgaATGTTGCCAGAatgata
agaatattttaaggctttgtggactctgaaacacccgatttcaaaggaaa
atggataaaaatattcaaaaaatggcgaaaaaaagaacatgttaatataa
gaacatcccaaggcttcaaaagttttgaatgttctaataaaaaaacgtgt
aagtaaAAATGGTTAAAGCAAATTTTTGCCGAAGTCTATAGAAATAAATC
TTTACCTATAACTTATAAGGAAAAGTTCTTAATTCAAATTGGCCATTTTT
CTGATAAGCATCTTGGTTTTTatgtgaaattttgattttgaaagaaaaga
caTGAAGAACGGGCCTGAGATTTGGCCAGATAAACATGCTTTTCAAGGAA
GAATGAGCTGACTTTCATCTTTATTTATATAAGCAAATTGCTAACGAATT
AGTTACCAGTTTTCCTggtgatttttttgcacaaagatgtgtcaACAGAA
ACCTCCGAATGTAAAAGAGACCGATTATTGGGGACTATTAATGGCTCAGA
TAGATTTGTCTTGAATGTTCTTTTTTGCTCCGAGATGAATTGTGctcttc
tagaaaaaaattgaatatgagtTTTTGGCAATTTACCCCCGAACATTAAG
ATTTTTGACCCCCAAACAGGAGATCTAACCCCTCGAACGAGCATCAGCTG
ACCCCTCGGACATTGAAAATTATCCCCGAACAGAGCAATTTTACCCCAAA
ACAGAGCAGATTTTACCCCCCCCCTGGACAAGGCAATCTTTGTAGATTTT
TAACTACTCCCCGGACGAACAAGTTTACTCCCCGGACGAACAAGTTTACA
CCCCGGAAAAGgcatttttgtagatttttcacgaACCCCCtcccccatgt
acgaacattttcttgaaaagcccatttttggcaaaaaaggcACTTTAAGC
CCATATTAATTTCTttgccaaattattattttttgagaatCTGACTCAAA
AAGTGAAATTCTGTCATGCAAATACTGTAgatattttttaataagaacaa
acttcaTAAGGCTTTTTAAGGGCCAAAATACTGTGGAACAATTTTAATAA
CACCCtggcgaaaaaaataaaaaataaaaaatcatgctTCAATTCATATT
TAGGTGGTTGGCTCGGTATAGCAAATATCACTTTCAACGATGCAAGTATT
ATGCAAATTTATCTTGGCTACGTAAATAACGAAGCACCTGTTTCAGACCT
CCAAAATATAGGGGATGGCAAATTCATGTTGGACGGACAAGTTGTTAAGA
GGTTGTTCACTGAACATGGCTATACAGAAGTTCGAGGtaaatgcttcaaa
aattggCATGGTCGGACACtgcattttattttgtttggaGAAGAAACGGT
CAAATACATGAGGAAGGAAGAAATGACGACGCATGGTTCATGCCAAAAGG
CCCGATATTTGTCGGACGACACATCTTATACGGCTCGAACTGATTGTTCA
ACAATTTGGATTGGCTATGGGCTAAGTCATCCTTATCATTATCATTTGCT
TTGGAAAGCTGCAACCTATCATGTTATGTTGCACAACAGATTTGCATGTG
ATGATAGTCACTTTTCTAACGCATTCACTAATACTGGATATTGGCTCTTC
TTTGTAAGATAATTTCACTTCTTTCGTACGCATATAGGGGCTTTCCATTT
TAACGAGTTTActtttagaccatgttcagactttacggtttcgtatcgtt
tcgaaacgaaacggttccaaAACAAATGTAACTTCagaattcgaaac Coding sequence (CDS) from alignment at sc0000356:229673..234119+ >TCONS_00020414 ID=TCONS_00020414|Name=TCONS_00020414|organism=Clytia hemisphaerica|type=CDS|length=2439bp|location=Sequence derived from alignment at sc0000356:229673..234119+ (Clytia hemisphaerica)
GCAGAATCACCAGTCGAATGTATATTAGAATGTCAAAAAGTATTGACATG
TGGGTATTTTGTTGACACGACAAAAACCTGTTTCTGCATGAAGAATGAag
atcaaaagattttttcaattgaagatgaaaatctAAATGGAACGTTTTAT
CAACAGGACCAACAGGGTAGTGTTTGCCCAGATATACAAAGAAAGAGTTG
TCAAAAAGTGAAAGAAGACTGCCCAACAAGCCCATCAGGTTTTTATCACA
TTGAAATCGATGGTCAAATAGTGAAGGCGTTTTGTGACTTAGAAGTTGAA
GGAGGTGGTTGGCTCGGTATAGCAAATATCACTTTCAACGATGCAAGTAT
TATGCAAATTTATCTTGGCTACGTAAATAACGAAGCACCTGTTTCAGACC
TCCAAAATATAGGGGATGGCAAATTCATGTTGGACGGACAAGTTGTTAAG
AGGTTGTTCACTGAACATGGCTATACAGAAGTTCGAGGtaaatgcttcaa
aaattggCATGGTCGGACACtgcattttattttgtttggaGAAGAAACGG
TCAAATACATGAGGAAGGAAGAAATGACGACGCATGGTTCATGCCAAAAG
GCCCGATATTTGTCGGACGACACATCTTATACGGCTCGAACTGATTGTTC
AACAATTTGGATTGGCTATGGGCTAAGTCATCCTTATCATTATCATTTGC
TTTGGAAAGCTGCAACCTATCATGTTATGTTGCACAACAGATTTGCATGT
GATGATAGTCACTTTTCTAACGCATTCACTAATACTGGATATTGGCTCTT
CTTTGTAAGATAAGCAGAATCACCAGTCGAATGTATATTAGAATGTCAAA
AAGTATTGACATGTGGGTATTTTGTTGACACGACAAAAACCTGTTTCTGC
ATGAAGAATGAagatcaaaagattttttcaattgaagatgaaaatctAAA
TGGAACGTTTTATCAACAGGACCAACAGGGTAGTGTTTGCCCAGATATAC
AAAGAAAGAGTTGTCAAAAAGTGAAAGAAGACTGCCCAACAAGCCCATCA
GGTTTTTATCACATTGAAATCGATGGTCAAATAGTGAAGGCGTTTTGTGA
CTTAGAAGTTGAAGGAGGTGGTTGGCTCGGTATAGCAAATATCACTTTCA
ACGATGCAAGTATTATGCAAATTTATCTTGGCTACGTAAATAACGAAGCA
CCTGTTTCAGACCTCCAAAATATAGGGGATGGCAAATTCATGTTGGACGG
ACAAGTTGTTAAGAGGTTGTTCACTGAACATGGCTATACAGAAGTTCGAG
GtaaatgcttcaaaaattggCATGGTCGGACACtgcattttattttgttt
ggaGAAGAAACGGTCAAATACATGAGGAAGGAAGAAATGACGACGCATGG
TTCATGCCAAAAGGCCCGATATTTGTCGGACGACACATCTTATACGGCTC
GAACTGATTGTTCAACAATTTGGATTGGCTATGGGCTAAGTCATCCTTAT
CATTATCATTTGCTTTGGAAAGCTGCAACCTATCATGTTATGTTGCACAA
CAGATTTGCATGTGATGATAGTCACTTTTCTAACGCATTCACTAATACTG
GATATTGGCTCTTCTTTGTAAGATAAGCAGAATCACCAGTCGAATGTATA
TTAGAATGTCAAAAAGTATTGACATGTGGGTATTTTGTTGACACGACAAA
AACCTGTTTCTGCATGAAGAATGAagatcaaaagattttttcaattgaag
atgaaaatctAAATGGAACGTTTTATCAACAGGACCAACAGGGTAGTGTT
TGCCCAGATATACAAAGAAAGAGTTGTCAAAAAGTGAAAGAAGACTGCCC
AACAAGCCCATCAGGTTTTTATCACATTGAAATCGATGGTCAAATAGTGA
AGGCGTTTTGTGACTTAGAAGTTGAAGGAGGTGGTTGGCTCGGTATAGCA
AATATCACTTTCAACGATGCAAGTATTATGCAAATTTATCTTGGCTACGT
AAATAACGAAGCACCTGTTTCAGACCTCCAAAATATAGGGGATGGCAAAT
TCATGTTGGACGGACAAGTTGTTAAGAGGTTGTTCACTGAACATGGCTAT
ACAGAAGTTCGAGGtaaatgcttcaaaaattggCATGGTCGGACACtgca
ttttattttgtttggaGAAGAAACGGTCAAATACATGAGGAAGGAAGAAA
TGACGACGCATGGTTCATGCCAAAAGGCCCGATATTTGTCGGACGACACA
TCTTATACGGCTCGAACTGATTGTTCAACAATTTGGATTGGCTATGGGCT
AAGTCATCCTTATCATTATCATTTGCTTTGGAAAGCTGCAACCTATCATG
TTATGTTGCACAACAGATTTGCATGTGATGATAGTCACTTTTCTAACGCA
TTCACTAATACTGGATATTGGCTCTTCTTTGTAAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020414-exon-sc0000356-1491911889:229673..229838 | TCONS_00020414-exon-sc0000356-1491911889:229673..229838 | Clytia hemisphaerica | exon |
| TCONS_00020414-exon-sc0000356-1510915933:229673..229838 | TCONS_00020414-exon-sc0000356-1510915933:229673..229838 | Clytia hemisphaerica | exon |
| TCONS_00020414-exon-sc0000356-1575043694:229673..229838 | TCONS_00020414-exon-sc0000356-1575043694:229673..229838 | Clytia hemisphaerica | exon |
| TCONS_00020414-exon-sc0000356-1491911889:230920..231058 | TCONS_00020414-exon-sc0000356-1491911889:230920..231058 | Clytia hemisphaerica | exon |
| TCONS_00020414-exon-sc0000356-1510915933:230920..231058 | TCONS_00020414-exon-sc0000356-1510915933:230920..231058 | Clytia hemisphaerica | exon |
| TCONS_00020414-exon-sc0000356-1575043694:230920..231058 | TCONS_00020414-exon-sc0000356-1575043694:230920..231058 | Clytia hemisphaerica | exon |
| TCONS_00020414-exon-sc0000356-1491911889:233476..234119 | TCONS_00020414-exon-sc0000356-1491911889:233476..234119 | Clytia hemisphaerica | exon |
| TCONS_00020414-exon-sc0000356-1510915933:233476..234119 | TCONS_00020414-exon-sc0000356-1510915933:233476..234119 | Clytia hemisphaerica | exon |
| TCONS_00020414-exon-sc0000356-1575043694:233476..234119 | TCONS_00020414-exon-sc0000356-1575043694:233476..234119 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000356 | supercontig | sc0000356:229673..234119 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR014716 | Fibrinogen_a/b/g_C_1 |
| IPR002181 | Fibrinogen_a/b/g_C_dom |
Blast
The following BLAST results are available for this feature:
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