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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020415 ID=TCONS_00020415|Name=TCONS_00020415|organism=Clytia hemisphaerica|type=transcript|length=1372bp
AAATACCGTCTTGTAAGCTGCTGAACCGATATCCTTGAGAAGCTTGGCAC
CAAATCCTATTTGTCTGTGTGTTCAATTCAAGTGTTTAGATGTCAAATTG
CAGTAAGGTCGTGTTTATCTTGTCAACGCATCATTCAAAAGATTGCACTC
ACGAAGTAAACAGCAAGAATTCAAAGAACTTAATCAACAAACGATACAAA
CTTCAACAAAGATGAATCAATTACAACTCTTATGTCTGGCAATCCTCTGC
ACCGTCACATTTGCACGATATGCACCAACTTACCAAAGATGTGAACCTGT
ACGTGTTGAAATGTGTAGAAACCTGGATCCAAAGAATTGGGTTCGAACCT
CGTTCCCAAATTTTATGAACCATTCATCATCCATTGTTGCTGAACGAGAA
CTTAAACAATATTATGACATCATTGATTCCAACTGCTCACCATACCTGAC
AACCTTCTTATGCTCTTTATATATGCCGATCTGCAAAGCTGGTATTGGTC
GTATCCCACCTTGCAAATCGTTATGTCAAGCAGCACGCTCTGGATGTGAA
CCTTTGTTGAATTCAGCTCACATCAGATGGCCTTATTCCATGAATTGTGA
CCAATTCCCAGACAGTGGACAACTTTGCATTGATTTACCAGAAACAGCAC
CAACACCAAAGGCTCTGAATGAAGTTGAAGCTAATCAAATCCCTTCTAAA
AGAACAGTCATCAAGAAAGATAAATTACCATCAATCGCAAAAAAGGATCT
GAAACCATTAGAAGAAGTCGTTCTAGAATGTCCACCTGATAAACAAATCA
TGGTCCGTAAAATTCGTCATTTTCCAGAACGTAATACTGATTGCTGCCCT
GTAGACTCTAAAGAAAAGATCTCAAGAGGATGCAATGGTAAACAAAAATG
TGAAATCATCTTAGATGAAAACGTCATCGGACATGGTTGCGTAACATCGA
TGGAGAAAACTTCCGTCAAATATAAATGTGTCGGACTTCAGCATAACGTC
AAGACGCGTAAATCAATTGGGTGTcggaaaaacaataaaaatggtATATA
GAAACATATTTCAATAGACTTATAATTGACTATGAGACATAcccaaaaat
gaaagaattattCCGACTGCAGCGAGACCAACGCGATGGTTTTCACACTT
TATTTATACACTAAACatagattttattgaaaaaatttaatgtAAATTTA
AGTTATAAAgagttaaaaaattttaacctgtttttctttctgttattagt
ttttttatcatttatcttaattttaaaaacattgtaaatattttatatTA
AAAGAttaattagaaaaataaatattataagtaacaacaaagaaaattCC
AAAATACAAGATTGTTGCTTCG Run BLAST on NCBI protein sequence of sFRP (secreted Frizzled related protein) >TCONS_00020415-protein ID=TCONS_00020415-protein|Name=sFRP (secreted Frizzled related protein)|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
MNQLQLLCLAILCTVTFARYAPTYQRCEPVRVEMCRNLDPKNWVRTSFPN
FMNHSSSIVAERELKQYYDIIDSNCSPYLTTFLCSLYMPICKAGIGRIPP
CKSLCQAARSGCEPLLNSAHIRWPYSMNCDQFPDSGQLCIDLPETAPTPK
ALNEVEANQIPSKRTVIKKDKLPSIAKKDLKPLEEVVLECPPDKQIMVRK
IRHFPERNTDCCPVDSKEKISRGCNGKQKCEIILDENVIGHGCVTSMEKT
SVKYKCVGLQHNVKTRKSIGCRKNNKNGI Run BLAST on NCBI transcript from alignment at sc0000356:261370..271440+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020415 ID=TCONS_00020415|Name=TCONS_00020415|organism=Clytia hemisphaerica|type=transcript|length=10071bp|location=Sequence derived from alignment at sc0000356:261370..271440+ (Clytia hemisphaerica)
AAATACCGTCTTGTAAGCTGCTGAACCGATATCCTTGAGAAGCTTGGCAC
CAAATCCTATTTGTCTGTGTGTTCAATTCAAGTGTTTAGATGTCAAATTG
CAGTAAGGTAAACATTATATGATATAAAGTActcttagagtgcacttttC
ATCTATGATTGTGTTGGAAAAGCTCTCTCTCTCTTTTCTTGTGCAAGAAT
TTACGTAGGATTTACGCTCTCTTGAAGGACGTAATGTCATCAACGCGTGA
AGAAATGTTAAAGCTCAGACCTTTTTAATAAATATCAGAAGGAAACTTCC
TTTTCGTCCTACCTCACTGTATCCGAACTTTTTCTGATGTTTTAACAAGA
CAGAAAGTTATTGACGATTCTGCAAAACCTGTACTAGTACGATTGTATCT
CAATTTACTTACAATTTTTCGAATCCAATGGAAACTATTCAGGCCCGGTA
ACAACCGTAAAaatggggaggctgaaggctcaaaatgagaagAATTCGct
ctaggaatttgagaaaaaaaatctcatttgctcaaaagtgggtaGGCTGA
AGTCTCCTCAGTCTCCCTGCTTTTGGTGGGCCTGCTCTTGCAAGGAGTTA
TTTCCACTCAGAACTAAGATTAGCTTATGAAAACTTATTAGACACTAAAT
TAGTACCTCCTCTGGTCTTTAACAAAATTAAACATTGATGGTTCTCTAAA
GCTATCCTAGTACCGTTCTAAACCTTGTAAATCTTTTCTACTTAAAATTA
AAGATGCTCATGAAAACCCATCAGACGCATGTGAGGTGCCATATCAATAT
CTTGTGGGCGCCTTGAATATGCTCATCAAATTTGCAATTTGGAAAAAACT
CCAATTTAGTTGTGGTTAGTGAAAggcattttttaaattataaatattTG
CACCCATTATAATAATGTGCTAATTTAGGTAATTGCTGGAGACTATAGAC
TTACAGCTATCagtcacttttcaaaaaaggtacGATAAATTACTTTACTT
TACTTATGTACGTCAATGTCTGGGCATTCCTTTTACATCGCTAGGTTCAA
AATCTATTCTATGTTGATAAAATTTGGAGGATGAATTGAAGTGAAGCATT
GGTTGAGTaaattattttcggcaaaagaaaaccgtttgcgaattttcttc
agctttgagattttttcttagatagtgatttgccTTAGACTAAGGTCTAC
CTAAACCAAAGAGAACTCACTATAGATCGCTAAAATGCCTATGCTAGTAG
ATTGATAAATGTATCCGATTTTCAAACTCAGTACAAAAATAGTAGAAGTG
ATGGCAACAGAAAAATCAGAGTATCTTCATATCATCTTACGAAACGTAAA
CAAAAGGAAACGCGTCTAAACAGAAATCATAATGCTCAGACGGAAAGCTG
TATATTTCTGCGACATCTTTTGATCCTTTCTAGCTATTCCGATATatctt
ttcatgtatttttatCATAAGATTTACAAGAAGGACTGGTAAAATCATCG
ATGGTAAACTTCAATGGTGTTTCAAAGCTCTATGATTTTTAAATCAGTTT
AATCTAAAAGTTACTCAACtatagtttttatattttttcaaatctgaTAT
CGATTTTTTAAAGAGATCTTAGCCCACCTTTCCATTGGCCAGGGTTAAAC
TGAAATTAAACacagttttcttataaaagtttACTATGCTTTATTTTTAG
CCGCTGGAGGGATGTTTGCATTTAGCTTATTTATGATGAGCATAAATCTG
TTTAATTAATCCTGTTCACTGCACTTTGGAGGAAACTGCTATACGTTCCT
TTTTTCGTACATCAGTAAATATTAAAATGACGTCTTGTTGCATCCTATTT
TTTATCAAGTCCTTAATAAAATTCAAGCTCATAGCAACTGCAAGGttacc
tgataacagatgttcataatcTCTTGCGCgtacggtaaacctctgaaggc
acttgaaaattatacatctgaggaaaatagtcctcccgcggaaaattcta
caacaagaatcttgctGTGCGCCGGAatgtcaaaaactgatacgtcattg
tcataaacacaatcacacaactttgttgtcgttcctagtccttttagacg
aacgcagtccttacgatttcgagattgcatattcgtcagattgttatgtt
ttcacacatccctttacagcttcagcgtggtgtgcagaaaacattcacaa
tctgatctcaggttactgCGAGGAGCATTATCTTTTAGTTCTATTTACCA
AACAAAAGCTGGTAATTTTGGAATTAAGGaagtaatttgattttaaaaag
tcaAGTTCGGGATAAAACTTTTTCCAGCTTACGAGATAATAAAAAATGGT
TTCAACATGGAACTGCTATTTTACCACGGTTTgctgaaagccttaaaatg
ggactaaaacatattttccttcaaaacttcaaaacgactcttttttctac
ttttcaaTACCAGGTTCTCATTAGAgaattctttttcatgtttGCTGTTT
TTTCTGGAGATCAAAACCTTTCGTTGGAACAATTTAAGTATGAATGGCAA
TTTGAATCGAAAAACATATCACTCATGTGTCTTCCTCGTTTCCTCGTGAG
CTGTCATAATGAAAACTTTCATCCATCGATGATATAACATCTATTATATG
AATGGTATTGATGGAATGTGGGAACCCTAAAATTACCCAGGAATTCAGGA
AATCTGACATTTCAGTCATTTTCCAAATGGTTCTGTAAtgagaagttttt
ttgaatgaattgatagaaaaattGATGCAATGTCACTTTTTGCACAATTT
TGTTTAGGTCACTAGGATAAACCTAACAAACCTTTACTTAGAGATAAATC
GAAGCACTGATTCAGACTCTAATTGAATGTAATAgtcaaaaatttaataa
aaatgcaATACATAACTTCGTTGCATGCAGATCTTTTTGTCATAGCTAAG
AACTTTCTAAGCTGTTTTAAATTTCAGTGGTCAGGACAGTTAGTAGTTAA
TAACTACATTTTACCGACACAAAGAGTCAAAAGTGTGAGCTGGGgtaatg
ataaacaaatacGAAAGGGAATGTTATACTGAGGGAACACACAGCTATTT
TTCTTTCCTCTGTCAAATATAAAAACCCTCTTCCTATCCGATAAAGTTAC
GTGTATTAAAATAACATCCAGACCTTTTGATCGTTTTAAATGCAGTACTG
TCAGACAGGAAGACAGGACATAGTAGATGCTATATAAAGAAATCCTAGGG
CATATCAAATGGGAAAGTATTCCTTGTTTGACTGCTGGACAAGACTATCA
AGACACTTATGCATCTGTAGACATCACAAAAGATTTCCGCTTTTCGTTTC
GAAGAGAGAGACTTGTATTAAGGTAAGAGCGTGTTCTTTTAATTTATGTA
AACAGAGGCGTCTATTATAATTGATAATATTTCAGAATCGTAATGGTGCT
TTGCTACTCTAAAGTTCTCTCTTGTTTATGTTGGAGCCTTGCTTTAGCTG
ATGAAATCAAATGCCATAGACTAGTGTCTTAGTTCTCTTATTATCCAGAC
CACAAAGAGAAGGGGGTGACTAGACGCTACCCTACTTTTCAATCATATGC
TAATTTTCCAGCACTTTCTCAATGCATTGTATTTATATTATGAAATTGGA
ATAAAAATTGGAATGACTTACAAttggtttttccagaaaaaattcaatat
tttggggtggaggatataacattttttggaaatttatccCCCGGttattg
tgacttttgaccccccccctaTTCCGTCTAACCTGCGTCTAACCCCCcga
acaagcatcagttgaccccttggacattcaaaattatctcaaacagagca
aaactACCCCCGAGCAGAGCAAGTTTATCCCccagacaaggcaaattttt
caGACCTTCACTGCCCCCTGACACTATATCCTTTACCCTCTCATGTACGA
ACAATTTCTTGAAGAGACCAATCCTGTTTTTTGTGATATTTTGGGTGAAT
TTTGAACGCACAAGCTTCGAGAACAAACCTAGTTTAAACCATCAGATCGA
ATTCCAAAAATCAATACAGTAATCTTGTTGTCATGGCAACCCTTTTACCA
GATTGCAGAAAAAATAATAAGGCTTTTTAATGGGTACTTCTAAAAATTGT
CATTTGCATTTCCGGCcaatttcaaaagtttgaatTGAAATTACTGACAT
CTAGCTTTTTCAGTGTTTAATACTGTATACTGAGGGTGATTTTCATTAAA
TAGCTTGCAACCAAAAGTCAATTATTTTCACCAAGAATAATTTCATCTGA
GGTCATTATTTTTATCTACTTTGagaagaaatttgaagaatgtCTTCTTT
TGCAAAAGCTATTTACAGGTCTACTAAAATGTTTTGCAGAATAGTTTTTT
ATGTCATGCCAAAATATCGttacatagatttataaagcccgaagggctat
gTAGATGTcatgctttggctgaaaagtgtgctgtggttaggtaggaaatc
ccaCCTAGGTCATGTAACATTACAATTGAATTTCAGcgtttgaccaatca
gaagcttcacgggtttttgaaaataatagcGATGCGATATCATATtcttt
tgcctgcgatggcttaaagcacgacatctagcccttcgagctttataaat
ctatgtatCGTTATCCCTGTTTATCTAACAAATAAATTCACTAGCATAAG
GGAAAAGTATAATGTCTTGCAAAAAGTTAGAACTTtgtagctggcacaca
acgtcgtttcaacgttcatctaacgttatatagatgttgtgaacgttaga
taaacgttgaaaaaacgttgcgtgccagctgggttgtaGCCACGTttggt
gattttattttataGAAGCATTCTTCAAGTCAAGGGAATGAGCACATTAT
GTAGGAACTTTTTTCATACGTATTGATTCTAGATTTTAACTAAATTGATA
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GTTCTCTCTTGTTTATGTTGGAGCCTTGCTTTAGCTGATGAAATCAAATG
CCATAGACTAGTGTCTTAGTTCTCTTATTATCCAGACCACAAAGAGAAGG
GGGTGACTAGACGCTACCCTACTTTTCAATCATATGCTAATTTTCCAGCA
CTTTCTCAATGCATTGAATTTATATTATGAAATTGGAATAAAAATTGGAA
TGACTTACAAttggtttttccagaaaaaattcaatattttggggtggagg
atataacatttcgTGGAAATTTATCCCCCGGtaattgtgacttttgaccc
cctgCCCATTCCGTCTAACCTGCGTCTAACCCCCcgaacaagcatcagtt
gaccccttggacattcaaaattatctcaaacagagcaaaactACCCCCGA
GCAGAGCAAGTTTATCCCccagacaaggcaaatttttcaGACCTTCACTG
CCCCCTGACACTATATCCTTTACCCTCTCATGTACGAACAATTTCTTGAA
GAGACCAATCCTGTTTTTTGTGATATTTTGGGTGAATTTTGAACGCACAA
GCTTCGAGAACAAACCTAGTTTAAACCATCAGATCGAATTCCAAAAATCA
ATACAGTAATCTTGTTGTCATGGCAACCCTTTTACCAGATTGCAGAAAAA
ATAATAAGGCTTTTTAATGGGTACTTCTAAAAATTGTCATTTGCATTTCC
GGCcaatttcaaaagtttgaatTGAAATTACTGACATCTAGCTTTTTCAG
TGTTTAATACTGTATACTGAGGGTGATTTTCATTAAATAGCTTGCAACCA
AAAGCCAATTATTTTCACCAAGAATAATTTCATCTGAGGTCATTATTTTT
ATCTACTTTGagaagaaatttgaagaatgtCTTCTTTTGCAAAAGCTATT
TACAGGTCTACTAAAATGTTTTGCAGAATAGTTTTTTATGTCATGCCAAA
ATATCGttacatagatttataaagcccgaagggctatgTAGATGTcatgc
tttggctgaaaagtgtgctgtggttaggtaggaaatcccaCCTAGGTCAT
GTAACATTACAATTGAATTTCAGcgtttgaccaatcagaagcttcacggg
tttttgaaaataatagcGATGCGATATCATATtcttttgcctgcgatggc
ttaaagcacgacatctagcccttcgagctttataaatctatgtatCGTTA
TCCCTGTTTATCTAACAAATAAATTCACTAGCACAAGGGAAAAGTATAAT
GTCTTGCAAAAAGCTAGAGCTTtgtagctggcacacaacgtcgtttcaac
gttcatctaaagtTATATagatgttgtgaacgttagataaacgttgaaaa
aacgttgcgtgccagctgggttgtaGCCACGTttggtgattttattttat
aGAAGCATTCTTCAAGTCAAGGGAATGAGCACATTATGTAAGAACTTTTT
TCATACGTATTGATTCTAGATTTTAACTAAATTGATAGTTGGATGTCATT
ATGGGGAGCTTTACTTTGTCTAAAACCGTTCCTTTTTCGGTATGTTTTGA
TCGAATGTACCTCtttgtttcaaaaatcttgCGAAAGATTTTGGAGATTA
GGAGTCTGAAATGAGAGGATTAAAAGGGATATTTTAActaatattttttg
ttatttcgaaaattgattttaagtGGTCTGTGTGGTCTAAATTATGCAAT
AAAACCgacataaaacaaaaacaaaaacattgaggCATTGGAAATATTAC
TTAACACAATTAACACGAAGAACGATGTTTTTCATGTCATGTTTtgagat
tttcagaaaaaaaaacacatgtaATAAATCAGGcgattgttttgaaatca
actGTTTGATATATTGATCATTTCTACTCGCCATcaataaatattatttt
tcgtaatcgcaaaatatttcttaccaATATAAGACATAACCTGATTGtct
aatattttcaaaacatttcaaaacaCTTTGAAACAGAATTAGAGATTGGG
AAGCAGACAGTGATAAATCAACATTTGGAACATTTTGTGGAAGTAGTTCA
AAATCTTCACTCTATTTTGGTGTTCTTCAATGTGGGCAGAAGAAGTAAAA
AACAGTAATTAAAgtctattttgaaaatgatttttctatttttaaaatcG
CGGATTTAAACATGTCTTGTAACGTTTATTCCCCGTTTATTAAGCATTCA
CGAAATGGAAATGCTCCTGAACTAGAGCGAGGCTTTTCCTCATGACAAAT
TTGACGTTCAATGTTATTTTGAGCCTAAGAAAGATTCATTTTTTCCCCCT
TACCCttgtaattttttcatttcacctCCTACTTCTTGGGACTTATTCAA
ACTCTAACTTCTTCGGAGAAGAAATCATTCCCGTAAAATGAGAAAcaaag
acacccccttctcacagacccacttggTCCCCTTTCCTaatggaaaaatt
tgccaaaacaTCACTTCtgcactgaaaataatcaaataaacagatcttca
ctgcaaaatattgtgctattgtttccatccccactgaattttctaacttg
aaaataatggaattcaaatccccagccataaaataCATGGAAATATCATT
CCCAATCGGGTTAAAATCCGTTATTCTAGCCTTGCGTGCTGAAAATAcct
taccgggtctgtgagaaggggtgtaacATTAATTTGGAGCGACTTTTTCT
AACCAGCATTGCCCTCCATAGAACTTCAGATAACCAGGAGTATGCTGTAA
TCTTTCAAACTCAAAGAAAACAAGGGTATTAAAGTTTTCCGGATTGGACA
CTCTAAACATTCTATTATCGCTAGTTACTATCTTTAGGTCTAAAGACACA
CCTTTTAGGTTCTTTACGTGCTTTATACACTAATAATCAGATCCTTCAAA
TCTGTCATGGATCATCGAATATTCTCAGGAAATATTTCATCGTTTTGTTG
TTTTGACTAAATGAATGGTATTTGACGTCCTTGGGGGTCACTTCATATTT
TAACAAGAGGAAAGGAAGAGGACTATTTATCCGCGTGAAGAAAGCACTTC
AAAGGCATTGACATTTTTCTTGTTTATCTAACAGAGATGTCCTATTCATC
AATTACGTGAGGGACTgggtatgactttttttctttgcttttgtTCCCGA
CAAAACCCATAAAGGAACTAGTACCGTTTGAAAAGAAGGCAGTCATTAAT
TTTTGTAGCGAGCTAAAGGAAGCTAGATTTTTGTCGCatgttcttgattt
tttggACATATCTAATTAGTCAGGTATGTTTGATATGCATCTAATGTCTA
GGATTTAATAGATTGTCGCGTACTCTTTGAGAAGATTCTCTTTAGATGat
cattaaaagatttttaattaCATTTTAATTCTTAATGAGGTGTTTAAAGA
ATGTCTAATTTAGCAGACTTTGGTCGCGCATATAGCTTAAGAATGACAGT
CGAAGCTATTTTTTCTACTTGACACAATTCGAAGAATGATAATAGCTCTA
CCGGACATAATAATGTTCCAATGTCATCATACTTCGAATTCCTGGTTTTC
AAACTCATTAACCAACTTTTATTGTATGTTTCTATTGTCTTAATAAACAT
TTGTTTAATTGTATCTATTGTTTTCTTAATATAAATAGGTCGTGTTTATC
TTGTCAACGCATCATTCAAAAGATTGCACTCACGAAGTAAACAGCAAGAA
TTCAAAGAACTTAATCAACAAACGATACAAACTTCAACAAAGATGAATCA
ATTACAACTCTTATGTCTGGCAATCCTCTGCACCGTCACATTTGCACGAT
ATGCACCAACTTACCAAAGATGTGAACCTGTACGTGTTGAAATGTGTAGA
AACCTGGATCCAAAGAATTGGGTTCGAACCTCGTTCCCAAATTTTATGAA
CCATTCATCATCCATTGTTGCTGAACGAGAACTTAAACAATATTATGACA
TCATTGATTCCAACTGCTCACCATACCTGACAACCTTCTTATGCTCTTTA
TATATGCCGATCTGCAAAGCTGGTATTGGTCGTATCCCACCTTGCAAATC
GTTATGTCAAGCAGCACGCTCTGGATGTGAACCTTTGTTGAATTCAGCTC
ACATCAGATGGCCTTATTCCATGAATTGTGACCAATTCCCAGACAGTGGA
CAACTTTGCATTGATTTACCAGAAACAGCACCAACACCAAAGGCTCTGAA
TGAAGTTGAAGCTAATCAAATCCCTTCTAAAAGAACAGTCATCAAGAAAG
GTGAGAATATTTTCCAAACCTGTTTTTTACATCTTTAGTGCTAAAAAATA
CCAGTAGATTACGATTTTCTTAAGAAAGAAATCCAGTTTATTGTCTTAAa
gctgattttaaattttttaatcatattttctttaaacaatatctaaatca
aatcttttattttcacaGATAAATTACCATCAATCGCAAAAAAGGATCTG
AAACCATTAGAAGAAGTCGTTCTAGAATGTCCACCTGATAAACAAATCAT
GGTCCGTAAAATTCGTCATTTTCCAGAACGTAATACTGATTGCTGCCCTG
TAGACTCTAAAGAAAAGATCTCAAGAGGATGCAATGGTAAACAAAAATGT
GAAATCATCTTAGATGAAAACGTCATCGGACATGGTTGCGTAACATCGAT
GGAGAAAACTTCCGTCAAATATAAATGTGTCGGACTTCAGCATAACGTCA
AGACGCGTAAATCAATTGGGTGTcggaaaaacaataaaaatggtATATAG
AAACATATTTCAATAGACTTATAATTGACTATGAGACATAcccaaaaatg
aaagaattattCCGACTGCAGCGAGACCAACGCGATGGTTTTCACACTTT
ATTTATACACTAAACatagattttattgaaaaaatttaatgtAAATTTAA
GTTATAAAgagttaaaaaattttaacctgtttttctttctgttattagtt
tttttatcatttatcttaattttaaaaacattgtaaatattttatatTAA
AAGAttaattagaaaaataaatattataagtaacaacaaagaaaattCCA
AAATACAAGATTGTTGCTTCG Coding sequence (CDS) from alignment at sc0000356:261370..271440+ >TCONS_00020415 ID=TCONS_00020415|Name=TCONS_00020415|organism=Clytia hemisphaerica|type=CDS|length=1680bp|location=Sequence derived from alignment at sc0000356:261370..271440+ (Clytia hemisphaerica)
ATGAATCAATTACAACTCTTATGTCTGGCAATCCTCTGCACCGTCACATT
TGCACGATATGCACCAACTTACCAAAGATGTGAACCTGTACGTGTTGAAA
TGTGTAGAAACCTGGATCCAAAGAATTGGGTTCGAACCTCGTTCCCAAAT
TTTATGAACCATTCATCATCCATTGTTGCTGAACGAGAACTTAAACAATA
TTATGACATCATTGATTCCAACTGCTCACCATACCTGACAACCTTCTTAT
GCTCTTTATATATGCCGATCTGCAAAGCTGGTATTGGTCGTATCCCACCT
TGCAAATCGTTATGTCAAGCAGCACGCTCTGGATGTGAACCTTTGTTGAA
TTCAGCTCACATCAGATGGCCTTATTCCATGAATTGTGACCAATTCCCAG
ACAGTGGACAACTTTGCATTGATTTACCAGAAACAGCACCAACACCAAAG
GCTCTGAATGAAGTTGAAGCTAATCAAATCCCTTCTAAAAGAACAGTCAT
CAAGAAAGATAAATTACCATCAATCGCAAAAAAGGATCTGAAACCATTAG
AAGAAGTCGTTCTAGAATGTCCACCTGATAAACAAATCATGGTCCGTAAA
ATTCGTCATTTTCCAGAACGTAATACTGATTGCTGCCCTGTAGACTCTAA
AGAAAAGATCTCAAGAGGATGCAATGGTAAACAAAAATGTGAAATCATCT
TAGATGAAAACGTCATCGGACATGGTTGCGTAACATCGATGGAGAAAACT
TCCGTCAAATATAAATGTGTCGGACTTCAGCATAACGTCAAGACGCGTAA
ATCAATTGGGTGTcggaaaaacaataaaaatggtATATAGATGAATCAAT
TACAACTCTTATGTCTGGCAATCCTCTGCACCGTCACATTTGCACGATAT
GCACCAACTTACCAAAGATGTGAACCTGTACGTGTTGAAATGTGTAGAAA
CCTGGATCCAAAGAATTGGGTTCGAACCTCGTTCCCAAATTTTATGAACC
ATTCATCATCCATTGTTGCTGAACGAGAACTTAAACAATATTATGACATC
ATTGATTCCAACTGCTCACCATACCTGACAACCTTCTTATGCTCTTTATA
TATGCCGATCTGCAAAGCTGGTATTGGTCGTATCCCACCTTGCAAATCGT
TATGTCAAGCAGCACGCTCTGGATGTGAACCTTTGTTGAATTCAGCTCAC
ATCAGATGGCCTTATTCCATGAATTGTGACCAATTCCCAGACAGTGGACA
ACTTTGCATTGATTTACCAGAAACAGCACCAACACCAAAGGCTCTGAATG
AAGTTGAAGCTAATCAAATCCCTTCTAAAAGAACAGTCATCAAGAAAGAT
AAATTACCATCAATCGCAAAAAAGGATCTGAAACCATTAGAAGAAGTCGT
TCTAGAATGTCCACCTGATAAACAAATCATGGTCCGTAAAATTCGTCATT
TTCCAGAACGTAATACTGATTGCTGCCCTGTAGACTCTAAAGAAAAGATC
TCAAGAGGATGCAATGGTAAACAAAAATGTGAAATCATCTTAGATGAAAA
CGTCATCGGACATGGTTGCGTAACATCGATGGAGAAAACTTCCGTCAAAT
ATAAATGTGTCGGACTTCAGCATAACGTCAAGACGCGTAAATCAATTGGG
TGTcggaaaaacaataaaaatggtATATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020415-exon-sc0000356-1491911889:261370..261476 | TCONS_00020415-exon-sc0000356-1491911889:261370..261476 | Clytia hemisphaerica | exon |
| TCONS_00020415-exon-sc0000356-1510915933:261370..261476 | TCONS_00020415-exon-sc0000356-1510915933:261370..261476 | Clytia hemisphaerica | exon |
| TCONS_00020415-exon-sc0000356-1575043694:261370..261476 | TCONS_00020415-exon-sc0000356-1575043694:261370..261476 | Clytia hemisphaerica | exon |
| TCONS_00020415-exon-sc0000356-1491911889:270008..270619 | TCONS_00020415-exon-sc0000356-1491911889:270008..270619 | Clytia hemisphaerica | exon |
| TCONS_00020415-exon-sc0000356-1510915933:270008..270619 | TCONS_00020415-exon-sc0000356-1510915933:270008..270619 | Clytia hemisphaerica | exon |
| TCONS_00020415-exon-sc0000356-1575043694:270008..270619 | TCONS_00020415-exon-sc0000356-1575043694:270008..270619 | Clytia hemisphaerica | exon |
| TCONS_00020415-exon-sc0000356-1491911889:270788..271440 | TCONS_00020415-exon-sc0000356-1491911889:270788..271440 | Clytia hemisphaerica | exon |
| TCONS_00020415-exon-sc0000356-1510915933:270788..271440 | TCONS_00020415-exon-sc0000356-1510915933:270788..271440 | Clytia hemisphaerica | exon |
| TCONS_00020415-exon-sc0000356-1575043694:270788..271440 | TCONS_00020415-exon-sc0000356-1575043694:270788..271440 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000356 | supercontig | sc0000356:261370..271440 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
| GO:0030246 | carbohydrate binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0030246 |
carbohydrate binding |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00020415 vs. Swiss-Prot (Human)
Match: SFRP4 (Secreted frizzled-related protein 4 OS=Homo sapiens GN=SFRP4 PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 2.205e-22 Identity = 62/155 (40.00%), Postives = 85/155 (54.84%), Query Frame = 2
Query: 212 MNQLQLLCLAILCTVTFARYAPTYQRCEPVRVEMCRNLDPKNWVRTSFPNFMNHSSSIVAERELKQYYDIIDSNCSPYLTTFLCSLYMPICKAGIGRIP--PCKSLCQAARSGCEPLLNSAHIRWPYSMNCDQFP--DSGQLCI-------DLPE 643
++ L LCL + + R AP CE VR+ MCR++ W T PN ++HS+ A ++QY +++D NCS L FLC++Y PIC P PCKS+CQ AR CEPL+ + WP S+ CD+ P D G +CI DLPE
Sbjct: 3 LSILVALCLWLHLALG-VRGAP----CEAVRIPMCRHMP---WNITRMPNHLHHSTQENAILAIEQYEELVDVNCSAVLRFFLCAMYAPICTLEFLHDPIKPCKSVCQRARDDCEPLMKMYNHSWPESLACDELPVYDRG-VCISPEAIVTDLPE 148
The following BLAST results are available for this feature:
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