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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020417 ID=TCONS_00020417|Name=TCONS_00020417|organism=Clytia hemisphaerica|type=transcript|length=1311bp
TTTTTGTCGCatgttcttgattttttggACATATCTAATTAGTCAGGTCG
TGTTTATCTTGTCAACGCATCATTCAAAAGATTGCACTCACGAAGTAAAC
AGCAAGAATTCAAAGAACTTAATCAACAAACGATACAAACTTCAACAAAG
ATGAATCAATTACAACTCTTATGTCTGGCAATCCTCTGCACCGTCACATT
TGCACGATATGCACCAACTTACCAAAGATGTGAACCTGTACGTGTTGAAA
TGTGTAGAAACCTGGATCCAAAGAATTGGGTTCGAACCTCGTTCCCAAAT
TTTATGAACCATTCATCATCCATTGTTGCTGAACGAGAACTTAAACAATA
TTATGACATCATTGATTCCAACTGCTCACCATACCTGACAACCTTCTTAT
GCTCTTTATATATGCCGATCTGCAAAGCTGGTATTGGTCGTATCCCACCT
TGCAAATCGTTATGTCAAGCAGCACGCTCTGGATGTGAACCTTTGTTGAA
TTCAGCTCACATCAGATGGCCTTATTCCATGAATTGTGACCAATTCCCAG
ACAGTGGACAACTTTGCATTGATTTACCAGAAACAGCACCAACACCAAAG
GCTCTGAATGAAGTTGAAGCTAATCAAATCCCTTCTAAAAGAACAGTCAT
CAAGAAAGATAAATTACCATCAATCGCAAAAAAGGATCTGAAACCATTAG
AAGAAGTCGTTCTAGAATGTCCACCTGATAAACAAATCATGGTCCGTAAA
ATTCGTCATTTTCCAGAACGTAATACTGATTGCTGCCCTGTAGACTCTAA
AGAAAAGATCTCAAGAGGATGCAATGGTAAACAAAAATGTGAAATCATCT
TAGATGAAAACGTCATCGGACATGGTTGCGTAACATCGATGGAGAAAACT
TCCGTCAAATATAAATGTGTCGGACTTCAGCATAACGTCAAGACGCGTAA
ATCAATTGGGTGTcggaaaaacaataaaaatggtATATAGAAACATATTT
CAATAGACTTATAATTGACTATGAGACATAcccaaaaatgaaagaattat
tCCGACTGCAGCGAGACCAACGCGATGGTTTTCACACTTTATTTATACAC
TAAACatagattttattgaaaaaatttaatgtAAATTTAAGTTATAAAga
gttaaaaaattttaacctgtttttctttctgttattagtttttttatcat
ttatcttaattttaaaaacattgtaaatattttatatTAAAAGAttaatt
agaaaaataaatattataagtaacaacaaagaaaattCCAAAATACAAGA
TTGTTGCTTCG Run BLAST on NCBI transcript from alignment at sc0000356:269597..271440+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020417 ID=TCONS_00020417|Name=TCONS_00020417|organism=Clytia hemisphaerica|type=transcript|length=1844bp|location=Sequence derived from alignment at sc0000356:269597..271440+ (Clytia hemisphaerica)
TTTTTGTCGCatgttcttgattttttggACATATCTAATTAGTCAGGTAT
GTTTGATATGCATCTAATGTCTAGGATTTAATAGATTGTCGCGTACTCTT
TGAGAAGATTCTCTTTAGATGatcattaaaagatttttaattaCATTTTA
ATTCTTAATGAGGTGTTTAAAGAATGTCTAATTTAGCAGACTTTGGTCGC
GCATATAGCTTAAGAATGACAGTCGAAGCTATTTTTTCTACTTGACACAA
TTCGAAGAATGATAATAGCTCTACCGGACATAATAATGTTCCAATGTCAT
CATACTTCGAATTCCTGGTTTTCAAACTCATTAACCAACTTTTATTGTAT
GTTTCTATTGTCTTAATAAACATTTGTTTAATTGTATCTATTGTTTTCTT
AATATAAATAGGTCGTGTTTATCTTGTCAACGCATCATTCAAAAGATTGC
ACTCACGAAGTAAACAGCAAGAATTCAAAGAACTTAATCAACAAACGATA
CAAACTTCAACAAAGATGAATCAATTACAACTCTTATGTCTGGCAATCCT
CTGCACCGTCACATTTGCACGATATGCACCAACTTACCAAAGATGTGAAC
CTGTACGTGTTGAAATGTGTAGAAACCTGGATCCAAAGAATTGGGTTCGA
ACCTCGTTCCCAAATTTTATGAACCATTCATCATCCATTGTTGCTGAACG
AGAACTTAAACAATATTATGACATCATTGATTCCAACTGCTCACCATACC
TGACAACCTTCTTATGCTCTTTATATATGCCGATCTGCAAAGCTGGTATT
GGTCGTATCCCACCTTGCAAATCGTTATGTCAAGCAGCACGCTCTGGATG
TGAACCTTTGTTGAATTCAGCTCACATCAGATGGCCTTATTCCATGAATT
GTGACCAATTCCCAGACAGTGGACAACTTTGCATTGATTTACCAGAAACA
GCACCAACACCAAAGGCTCTGAATGAAGTTGAAGCTAATCAAATCCCTTC
TAAAAGAACAGTCATCAAGAAAGGTGAGAATATTTTCCAAACCTGTTTTT
TACATCTTTAGTGCTAAAAAATACCAGTAGATTACGATTTTCTTAAGAAA
GAAATCCAGTTTATTGTCTTAAagctgattttaaattttttaatcatatt
ttctttaaacaatatctaaatcaaatcttttattttcacaGATAAATTAC
CATCAATCGCAAAAAAGGATCTGAAACCATTAGAAGAAGTCGTTCTAGAA
TGTCCACCTGATAAACAAATCATGGTCCGTAAAATTCGTCATTTTCCAGA
ACGTAATACTGATTGCTGCCCTGTAGACTCTAAAGAAAAGATCTCAAGAG
GATGCAATGGTAAACAAAAATGTGAAATCATCTTAGATGAAAACGTCATC
GGACATGGTTGCGTAACATCGATGGAGAAAACTTCCGTCAAATATAAATG
TGTCGGACTTCAGCATAACGTCAAGACGCGTAAATCAATTGGGTGTcgga
aaaacaataaaaatggtATATAGAAACATATTTCAATAGACTTATAATTG
ACTATGAGACATAcccaaaaatgaaagaattattCCGACTGCAGCGAGAC
CAACGCGATGGTTTTCACACTTTATTTATACACTAAACatagattttatt
gaaaaaatttaatgtAAATTTAAGTTATAAAgagttaaaaaattttaacc
tgtttttctttctgttattagtttttttatcatttatcttaattttaaaa
acattgtaaatattttatatTAAAAGAttaattagaaaaataaatattat
aagtaacaacaaagaaaattCCAAAATACAAGATTGTTGCTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020417-exon-sc0000356-1491911889:269597..269642 | TCONS_00020417-exon-sc0000356-1491911889:269597..269642 | Clytia hemisphaerica | exon |
| TCONS_00020417-exon-sc0000356-1510915933:269597..269642 | TCONS_00020417-exon-sc0000356-1510915933:269597..269642 | Clytia hemisphaerica | exon |
| TCONS_00020417-exon-sc0000356-1575043694:269597..269642 | TCONS_00020417-exon-sc0000356-1575043694:269597..269642 | Clytia hemisphaerica | exon |
| TCONS_00020417-exon-sc0000356-1491911889:270008..270619 | TCONS_00020417-exon-sc0000356-1491911889:270008..270619 | Clytia hemisphaerica | exon |
| TCONS_00020417-exon-sc0000356-1510915933:270008..270619 | TCONS_00020417-exon-sc0000356-1510915933:270008..270619 | Clytia hemisphaerica | exon |
| TCONS_00020417-exon-sc0000356-1575043694:270008..270619 | TCONS_00020417-exon-sc0000356-1575043694:270008..270619 | Clytia hemisphaerica | exon |
| TCONS_00020417-exon-sc0000356-1491911889:270788..271440 | TCONS_00020417-exon-sc0000356-1491911889:270788..271440 | Clytia hemisphaerica | exon |
| TCONS_00020417-exon-sc0000356-1510915933:270788..271440 | TCONS_00020417-exon-sc0000356-1510915933:270788..271440 | Clytia hemisphaerica | exon |
| TCONS_00020417-exon-sc0000356-1575043694:270788..271440 | TCONS_00020417-exon-sc0000356-1575043694:270788..271440 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000356 | supercontig | sc0000356:269597..271440 + |
Blast
BLAST of TCONS_00020417 vs. Swiss-Prot (Human)
Match: SFRP4 (Secreted frizzled-related protein 4 OS=Homo sapiens GN=SFRP4 PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 1.541e-22 Identity = 62/155 (40.00%), Postives = 85/155 (54.84%), Query Frame = 1
Query: 151 MNQLQLLCLAILCTVTFARYAPTYQRCEPVRVEMCRNLDPKNWVRTSFPNFMNHSSSIVAERELKQYYDIIDSNCSPYLTTFLCSLYMPICKAGIGRIP--PCKSLCQAARSGCEPLLNSAHIRWPYSMNCDQFP--DSGQLCI-------DLPE 582
++ L LCL + + R AP CE VR+ MCR++ W T PN ++HS+ A ++QY +++D NCS L FLC++Y PIC P PCKS+CQ AR CEPL+ + WP S+ CD+ P D G +CI DLPE
Sbjct: 3 LSILVALCLWLHLALG-VRGAP----CEAVRIPMCRHMP---WNITRMPNHLHHSTQENAILAIEQYEELVDVNCSAVLRFFLCAMYAPICTLEFLHDPIKPCKSVCQRARDDCEPLMKMYNHSWPESLACDELPVYDRG-VCISPEAIVTDLPE 148
The following BLAST results are available for this feature:
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