TCONS_00020428 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020428
Unique NameTCONS_00020428
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1108

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020428 ID=TCONS_00020428|Name=TCONS_00020428|organism=Clytia hemisphaerica|type=transcript|length=1108bp
aaattgatctttGGTTGAGTCGAGGCAGACAACGGACCAGTCTAGCTTCG
ACAGTATTTGAATCACATGTCACTATTATATCATACTATTTCCATTCATT
ACCGGCGGCCCTGCTTCCTTTTTGTTGtgataaagtaaaattaaagGGGG
TTAGAAAATAAGAATTCAAGATGACAGAACCAATGACGTACGAGCAATAT
GCAAAGGACTACCCAGGAAACCATTTCCTTGTCCTTGGTCCAACAAACCC
TGTCCGTAAAATCGCTTTCAAAATATCCACTTCAAAGCTGTTCGATTCGT
TTATTTTACTTGCCATCGTTGTGAACTGTATTATGATGGCAATGAGTGCT
CCACTACCACTCAACGATACAAATGAGCTGAACAATAGTATAGAAGCTTT
GGAGGTCTATTTGCTGGCCATTTTCATAGGAGAAGCTTGCGTCAAAATGC
TAACTCAAGGTTTCATTTTACATGCTGGTTCGTACATTCGAAACGGATGG
AACTTGCTGGATTTCACTGTCGTTGTTACAGGTATTTTGGGTTTACCGTC
GGTTGGAATGGGTGAAAATGCGGGACCAATGAAAGTCATCAAAGCTGCTA
GAGTGTTACGTCCATTGAAACTTGTTTCTGGTGTACCAAGTTTACAAATT
GTTATGAGTGCCATCATCAAATCTATGGCCTCACTTTTACAAATTTCTCT
ACTCATTGGTTTTGTAATTGTTATTTTCGCCATCATTTTCTTGTCTTTTC
TACCCGGAAAATTCCATTACACATGTTTCAAGAATGCAACTGAACCGTTT
CCTCAAGAATATCAAATAGAAGCTGGTCGACTATGTTCCGAGGGGAGCTC
AGGACGTCCATGTCCCGAGGGAAGCATATGTAAAAGATACTGGGATGGTC
CTAATTTTGGTGTGACAAATTTCGATAATATTTTCAGTGCATGTCTGACT
GTCTTTACGTGTATCACATGTGAAGGGTGGACAGATACTATGTATTGGAC
GATGGATGTTATGGATTATGATGGATATTATATGTTTTCGATTTATTGGC
TTTTGAATGTCATTGGTGCTCAATTCATGTTGAATTTAGTCTGTGGTGTC
CTCAGCGG
Run BLAST on NCBI

protein sequence of TCONS_00020428-protein

>TCONS_00020428-protein ID=TCONS_00020428-protein|Name=TCONS_00020428-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
MTEPMTYEQYAKDYPGNHFLVLGPTNPVRKIAFKISTSKLFDSFILLAIV
VNCIMMAMSAPLPLNDTNELNNSIEALEVYLLAIFIGEACVKMLTQGFIL
HAGSYIRNGWNLLDFTVVVTGILGLPSVGMGENAGPMKVIKAARVLRPLK
LVSGVPSLQIVMSAIIKSMASLLQISLLIGFVIVIFAIIFLSFLPGKFHY
TCFKNATEPFPQEYQIEAGRLCSEGSSGRPCPEGSICKRYWDGPNFGVTN
FDNIFSACLTVFTCITCEGWTDTMYWTMDVMDYDGYYMFSIYWLLNVIGA
QFMLNLVCGVLS
Run BLAST on NCBI

transcript from alignment at sc0000356:114450..119374-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020428 ID=TCONS_00020428|Name=TCONS_00020428|organism=Clytia hemisphaerica|type=transcript|length=4925bp|location=Sequence derived from alignment at sc0000356:114450..119374- (Clytia hemisphaerica)
AAATTGATCTTTGGTTGAGTCGAGGCAGACAACGGACCAGTCTAGCTTCG
ACAGTATTTGAATCACATGTCACTATTATATCATACTATTTCCATTCATT
ACCGGCGGCCCTGCTTCCTTTTTGTTGTGATAAAGTAAAATTAAAGGTAA
GAATTGAAAGTTACACGTTTTCTTTTTATAAGAACATCCAAAAATTTTGA
AGCCTTCGGATGTTCTTAACTTGTTGAGTTTTAAGCCTAACAATGCTCTT
AACATGTTCTTATTTTCGCAATTTTTTGAGTATTTCTGAACATTTTCCTA
AGAAATAGGGTGTTTTTGAGTCCACAAAGCCTTAAAATGTTCTTAACTTA
TTCTTAACATTTTGGCTACCGAAGCCTTATATTCTTATAAAAAAAACGTG
CACGCTATGATTTTTCACCAGTTTCATTAATTTTCAGTATTAAAATAAAT
ACATTATGCTGAATATGCGAATCATCTATTCACACCACAATCAATACAAT
TCTATGATGAATCATAATAAGTTAAACTTTTAATAATGAATAAATACTTG
TGAATGCGATGGATTCATTAATACATAATAAGGATATCATTTTTTGGTTG
AAGTTCAGATTCTTAATATGAAGGGAAATATCGAATGATATGATGTTTCN
AATTTTTTCGGTTGAAGTTCAGATTCTTAATATGAAGGGAAATATCGAAT
GATGTGATGTTTTGTGGTAAACTTTTTTTTGACTTCTTGCTATTTTCTTG
AGAATGTTCTTTTTTGATTAAGATTCTTTGATTAAGATTCTTTTAAGTTT
AGAACGTTCTGAAAATGAGTTTTGTGGTACTCGAATTTCTCTTGTATAGC
ATTTTACAAAAAAAATAGAAAAAATATATATATTAAGCAAAAGCTTCATT
AGCCAAATGGTTTGTTAGCAAACAACGAAGCAACAAGATAAGAGAAAAGA
AGTTTTAGAAACATCGTAATTGTAATGCCTATGCAGTGAATTCTAATTCT
TTTAGTTCATCGAGTATTATTTGGGTAAATCAAAACTTTACTTAAACCTA
TGAAAACATTAGATTTGGGAATATGTGATAGATTTTGACAAGGCTTGTGA
AAAACAGGCCCGGCGGAACAACCATAAAAGTGGGGAGGCTGAAGGCTCAC
AATGGGATAAAAATCGCTAGCGATTTGAGAAAAAAATCTCATTTGCTCAA
AAGTGGGGAGGCTGGAGTCTCCCCAGTCTTTCCACTTCCGCCGGGCCTGA
TCAATAAGAACTTTCTAATCATCTCATCTTCAGGGGGTTAGAAAATAAGA
ATTCAAGATGACAGAACCAATGACGTACGAGCAATATGCAAAGGACTACC
CAGGAAACCATTTCCTTGTCCTTGGTCCAACAAACCCTGTCCGTAAAATC
GCTTTCAAAATATCCACTTCAAAGGTATTATATTTTCTTCAGAAGCTTTG
AAACCCTGTTCGAATTATTTTGTTAGGGTTGGGTCTCCAAAATTTTGACT
TCATAAGAGGTAAATATTGATTGACTTTGAGTCATTTTAGCGCTCTTTTA
GATGAGCAATAAAGGTTTTGGGTGATTTTTAGGGGCATGCTTTTAATATT
TTTGTCTTTAAAAATTTTTACATCTTATTGCGCTTGTAATTTCTGATTTA
GTTCTATTTATTATTTTCTAGCTGTTCGATTCGTTTATTTTACTTGCCAT
CGTTGTGAACTGTATTATGATGGCAATGAGTGCTCCACTACCACTCAACG
ATACAAATGAGCTGAACAATAGTATAGTAAGTCTATGTTTTAAATATCCC
CTTTATTGTGTTGTGCCTCATCAAACCGTCTGGCTGGGTGCACTCCTTAC
GGGTTTAAAGCAATTCAAAGACACAATTAATTTCTACTTTGAACTTCCTC
GTGTTAACAGACCCTATAACTTTTCATTAGGCCTAGATTGAGTAGCTAGG
TTCATCTTTTAAGCCTCCCTTTCGTATTAACCACCTCATCACCACCGTTT
AGACCTTACCATCACCCAAAAGAGGTTATCTCTAGATCTAACATTTCTGT
ATATGTATACCGAGTTTATCGTTCTACATCAGCAATTTGAGCTTTACGAA
GCTCGTTTGACATTCTACCGATTCGTATTTGTGAAGGTTTCGATCACAGA
CTTGCACCGCCATGGACTGTGTTCGAATCCCAAGCACTTCCAGGCAGGGT
GTTAGGGAAATATGGTGATAGATTCTCTACCTTTACTCACATTTCTTTAT
GTTTTTAATCCTTTCAGGAAGCTTTGGAGGTCTATTTGCTGGCCATTTTC
ATAGGAGAAGCTTGCGTCAAAATGCTAACTCAAGGTTTCATTTTACATGC
TGGTTCGTACATTCGAAACGGATGGAACTTGCTGGATTTCACTGTCGTTG
TTACAGGGTAAATGCTTTTATAAACAGCATGTCCCGAAAAAAGCGGACAA
ATTTTTATATAAAGTAAAATCCTCATAATATAATTTATGCCGATTTTTAT
GACTTACATACTAAATATCTCAATCGCAAAAACCTGTTCAATCATTTCTG
GGATACTGAATATCTATTGATTGAACTGTAATCCTATTTCAATTATTCTA
ATTCAAGTTTAATGAGTTTTGAGGATTTTACATTTGTCCACTTTTTTTTT
GAGACACACAGTACAACGGAAATGTTCAAATACATGATCTAGGTGGTTTG
ATTATATCTAAAATGAGCCTTGTTTTTCTTTACAACTATACATGCTTTTC
TCTTTGTAAGAACGCATAAAGCTAAATTTTAGCAACGACCTAAGAGCAAA
TTATAAGACCAATCCAAACAATACAAGCCTTATAGATTTTGTAAACGGTT
TAGTAGAGAATGCTGATTTGTAGCCCCTAGCAAGTCAATAAAGAAATCAT
AAACCGTGTACTATTCCAAAGCAAGAATATCGATGTCTTGATTTCCGAAA
GGTCCTACCCGATGAATAAAAGAACACACTCTAAAATCTAAAAAATACCC
ACATCTTTGATAAGACAAAACGCTTAATATAAAGCTCTTATCTTGCCGTT
ACTATAATTATGTTATCATAATTCTCTTATAGTATTTTGGGTTTACCGTC
GGTTGGAATGGGTGAAAATGCGGGACCAATGAAAGTCATCAAAGCTGCTA
GAGTGTTACGTCCATTGAAACTTGTTTCTGGTGTACCAAGTGAGTTTTCT
AAAGAAATCATCAGATTGTTTGAGATCCTGTTGATAGTACAACAAGCCAG
TTTTTTTTCGAGTGTGAAAACATGCTATGTTCTTAACGACGCTCTTAAAT
TTTGAGATCAATTAAATCATCAAAGAATTGTTACCTGGACTGATTAAGAT
GTTCTTATTTTTTAGTAAGATTTCAGCCTAAATGTTCTTATAAATTGGGT
TCCAATACGTGAATTCTCATTTTTACATTTCAGGTTTACAAATTGTTATG
AGTGCCATCATCAAATCTATGGCCTCACTTTTACAAATTTCTCTACTCAT
TGGTTTTGTAATTGTTATTTTCGCCATCATTTTCTTGTCTTTTCTACCCG
GAAAATTCCATTACACATGTTTCAAGAATGCAACTGAACCGTTTCCTCAA
GAATGTAAGTTGTTTGTTGTAGGTTTGTTTGTTAGCTTGTAAGAACAAGT
TAAGAACCTTCAGAACGTAGGGTGGAAAAAATCTTTTTAGAAAATGCTGA
ATTTTTAAATCCTGATTCGTTTAAGATAAACAATCGACTACTATTATTAT
CAACTCGAGCTAAAATAGAAAGCTACATTTTTATAATTCTGGCCTCTGGA
TCTTAATTTTAAACGCAGATAGCTTGAAAACATTATAAGAGGGTTTCGCT
TCTTAAAAACCACAATATTATGTACACAATTAGAACGGCGCATGCAACTA
TCCTTCCTAACCTTCTTTCGAATTTTGAGTTTTTTTACCTACAGAAGCAC
ACTCCCCTCCCCATTCGTGTGACGTAATATAATTCCAGAACGGCGTTTTT
TACCATCTATCACCAAAGATTTGAAATTCGACCTCAAGAAAAGAAAGTTT
TGACAGTACTATACGGAATAAAAATGAAACATAAAAAAGAGATATTTGTA
TAAGTTAACTTGAATAATCGTCCTGAATTTAATGTTAGTACCTACGTACA
ATAGTTTCAAGAATAAACAATTTCCTTTTTAGATCAAATAGAAGCTGGTC
GACTATGTTCCGAGGGGAGCTCAGGACGTCCATGTCCCGAGGGAAGCATA
TGTAAAAGATACTGGGATGGTCCTAATTTTGGTGTGACAAATTTCGATAA
TATTTTCAGTGCATGTCTGACTGTCTTTACGTGTATCACATGTGAAGGGT
GGACAGATACTATGTATTGGGTGAGATCGCTTTCTTTATCATTCTTATAA
GTATTGATGACTAAGAACTTGTCAAATAGAACAAAAATAAGTCCGAAAAA
AGACATCTTGGCTCCTTGATACTCAGATATAGACACAATGCAATACATAG
AAGCGCCAAAACAGGGTCTTAGAACACACTTACAAAGATAAGTTTATTTA
AGGGATGTTAATTTCATGGTTTCGTCTGCCGCCGCAACATAATGATGATG
GTTTTTTTTGGGAAGGCGCTAATTTCCCCCTTGCCGGTTGCCATTTTTTA
TAAACAGTCCAATCTCCTCTTAGAAACAATGTTTACGCTTCTGCAACCCT
GGGCTAAGAAAATTGCTAATATTAATGTGAAATTATTTCGTGCTTCAAAG
CCGAGCTGTTTCCTGATCTTGTAAAAGTGGGGGTTAGTTAATAGGTGTAT
TCTTTTTCTTCGCAGACGATGGATGTTATGGATTATGATGGATATTATAT
GTTTTCGATTTATTGGCTTTTGAATGTCATTGGTGCTCAATTCATGTTGA
ATTTAGTCTGTGGTGTCCTCAGCGG

Coding sequence (CDS) from alignment at sc0000356:114450..119374-

>TCONS_00020428 ID=TCONS_00020428|Name=TCONS_00020428|organism=Clytia hemisphaerica|type=CDS|length=6552bp|location=Sequence derived from alignment at sc0000356:114450..119374- (Clytia hemisphaerica)
ACGATGGATGTTATGGATTATGATGGATATTATATGTTTTCGATTTATTG
GCTTTTGAATGTCATTGGTGCTCAATTCATGTTGAATTTAGTCTGTGGTG
TCCTCAGCATCAAATAGAAGCTGGTCGACTATGTTCCGAGGGGAGCTCAG
GACGTCCATGTCCCGAGGGAAGCATATGTAAAAGATACTGGGATGGTCCT
AATTTTGGTGTGACAAATTTCGATAATATTTTCAGTGCATGTCTGACTGT
CTTTACGTGTATCACATGTGAAGGGTGGACAGATACTATGTATTGGGTTT
ACAAATTGTTATGAGTGCCATCATCAAATCTATGGCCTCACTTTTACAAA
TTTCTCTACTCATTGGTTTTGTAATTGTTATTTTCGCCATCATTTTCTTG
TCTTTTCTACCCGGAAAATTCCATTACACATGTTTCAAGAATGCAACTGA
ACCGTTTCCTCAAGAATTATTTTGGGTTTACCGTCGGTTGGAATGGGTGA
AAATGCGGGACCAATGAAAGTCATCAAAGCTGCTAGAGTGTTACGTCCAT
TGAAACTTGTTTCTGGTGTACCAAGAAGCTTTGGAGGTCTATTTGCTGGC
CATTTTCATAGGAGAAGCTTGCGTCAAAATGCTAACTCAAGGTTTCATTT
TACATGCTGGTTCGTACATTCGAAACGGATGGAACTTGCTGGATTTCACT
GTCGTTGTTACAGGCTGTTCGATTCGTTTATTTTACTTGCCATCGTTGTG
AACTGTATTATGATGGCAATGAGTGCTCCACTACCACTCAACGATACAAA
TGAGCTGAACAATAGTATAATGACAGAACCAATGACGTACGAGCAATATG
CAAAGGACTACCCAGGAAACCATTTCCTTGTCCTTGGTCCAACAAACCCT
GTCCGTAAAATCGCTTTCAAAATATCCACTTCAAAGACGATGGATGTTAT
GGATTATGATGGATATTATATGTTTTCGATTTATTGGCTTTTGAATGTCA
TTGGTGCTCAATTCATGTTGAATTTAGTCTGTGGTGTCCTCAGCATCAAA
TAGAAGCTGGTCGACTATGTTCCGAGGGGAGCTCAGGACGTCCATGTCCC
GAGGGAAGCATATGTAAAAGATACTGGGATGGTCCTAATTTTGGTGTGAC
AAATTTCGATAATATTTTCAGTGCATGTCTGACTGTCTTTACGTGTATCA
CATGTGAAGGGTGGACAGATACTATGTATTGGGTTTACAAATTGTTATGA
GTGCCATCATCAAATCTATGGCCTCACTTTTACAAATTTCTCTACTCATT
GGTTTTGTAATTGTTATTTTCGCCATCATTTTCTTGTCTTTTCTACCCGG
AAAATTCCATTACACATGTTTCAAGAATGCAACTGAACCGTTTCCTCAAG
AATTATTTTGGGTTTACCGTCGGTTGGAATGGGTGAAAATGCGGGACCAA
TGAAAGTCATCAAAGCTGCTAGAGTGTTACGTCCATTGAAACTTGTTTCT
GGTGTACCAAGAAGCTTTGGAGGTCTATTTGCTGGCCATTTTCATAGGAG
AAGCTTGCGTCAAAATGCTAACTCAAGGTTTCATTTTACATGCTGGTTCG
TACATTCGAAACGGATGGAACTTGCTGGATTTCACTGTCGTTGTTACAGG
CTGTTCGATTCGTTTATTTTACTTGCCATCGTTGTGAACTGTATTATGAT
GGCAATGAGTGCTCCACTACCACTCAACGATACAAATGAGCTGAACAATA
GTATAATGACAGAACCAATGACGTACGAGCAATATGCAAAGGACTACCCA
GGAAACCATTTCCTTGTCCTTGGTCCAACAAACCCTGTCCGTAAAATCGC
TTTCAAAATATCCACTTCAAAGACGATGGATGTTATGGATTATGATGGAT
ATTATATGTTTTCGATTTATTGGCTTTTGAATGTCATTGGTGCTCAATTC
ATGTTGAATTTAGTCTGTGGTGTCCTCAGCATCAAATAGAAGCTGGTCGA
CTATGTTCCGAGGGGAGCTCAGGACGTCCATGTCCCGAGGGAAGCATATG
TAAAAGATACTGGGATGGTCCTAATTTTGGTGTGACAAATTTCGATAATA
TTTTCAGTGCATGTCTGACTGTCTTTACGTGTATCACATGTGAAGGGTGG
ACAGATACTATGTATTGGGTTTACAAATTGTTATGAGTGCCATCATCAAA
TCTATGGCCTCACTTTTACAAATTTCTCTACTCATTGGTTTTGTAATTGT
TATTTTCGCCATCATTTTCTTGTCTTTTCTACCCGGAAAATTCCATTACA
CATGTTTCAAGAATGCAACTGAACCGTTTCCTCAAGAATTATTTTGGGTT
TACCGTCGGTTGGAATGGGTGAAAATGCGGGACCAATGAAAGTCATCAAA
GCTGCTAGAGTGTTACGTCCATTGAAACTTGTTTCTGGTGTACCAAGAAG
CTTTGGAGGTCTATTTGCTGGCCATTTTCATAGGAGAAGCTTGCGTCAAA
ATGCTAACTCAAGGTTTCATTTTACATGCTGGTTCGTACATTCGAAACGG
ATGGAACTTGCTGGATTTCACTGTCGTTGTTACAGGCTGTTCGATTCGTT
TATTTTACTTGCCATCGTTGTGAACTGTATTATGATGGCAATGAGTGCTC
CACTACCACTCAACGATACAAATGAGCTGAACAATAGTATAATGACAGAA
CCAATGACGTACGAGCAATATGCAAAGGACTACCCAGGAAACCATTTCCT
TGTCCTTGGTCCAACAAACCCTGTCCGTAAAATCGCTTTCAAAATATCCA
CTTCAAAGACGATGGATGTTATGGATTATGATGGATATTATATGTTTTCG
ATTTATTGGCTTTTGAATGTCATTGGTGCTCAATTCATGTTGAATTTAGT
CTGTGGTGTCCTCAGCATCAAATAGAAGCTGGTCGACTATGTTCCGAGGG
GAGCTCAGGACGTCCATGTCCCGAGGGAAGCATATGTAAAAGATACTGGG
ATGGTCCTAATTTTGGTGTGACAAATTTCGATAATATTTTCAGTGCATGT
CTGACTGTCTTTACGTGTATCACATGTGAAGGGTGGACAGATACTATGTA
TTGGGTTTACAAATTGTTATGAGTGCCATCATCAAATCTATGGCCTCACT
TTTACAAATTTCTCTACTCATTGGTTTTGTAATTGTTATTTTCGCCATCA
TTTTCTTGTCTTTTCTACCCGGAAAATTCCATTACACATGTTTCAAGAAT
GCAACTGAACCGTTTCCTCAAGAATTATTTTGGGTTTACCGTCGGTTGGA
ATGGGTGAAAATGCGGGACCAATGAAAGTCATCAAAGCTGCTAGAGTGTT
ACGTCCATTGAAACTTGTTTCTGGTGTACCAAGAAGCTTTGGAGGTCTAT
TTGCTGGCCATTTTCATAGGAGAAGCTTGCGTCAAAATGCTAACTCAAGG
TTTCATTTTACATGCTGGTTCGTACATTCGAAACGGATGGAACTTGCTGG
ATTTCACTGTCGTTGTTACAGGCTGTTCGATTCGTTTATTTTACTTGCCA
TCGTTGTGAACTGTATTATGATGGCAATGAGTGCTCCACTACCACTCAAC
GATACAAATGAGCTGAACAATAGTATAATGACAGAACCAATGACGTACGA
GCAATATGCAAAGGACTACCCAGGAAACCATTTCCTTGTCCTTGGTCCAA
CAAACCCTGTCCGTAAAATCGCTTTCAAAATATCCACTTCAAAGACGATG
GATGTTATGGATTATGATGGATATTATATGTTTTCGATTTATTGGCTTTT
GAATGTCATTGGTGCTCAATTCATGTTGAATTTAGTCTGTGGTGTCCTCA
GCATCAAATAGAAGCTGGTCGACTATGTTCCGAGGGGAGCTCAGGACGTC
CATGTCCCGAGGGAAGCATATGTAAAAGATACTGGGATGGTCCTAATTTT
GGTGTGACAAATTTCGATAATATTTTCAGTGCATGTCTGACTGTCTTTAC
GTGTATCACATGTGAAGGGTGGACAGATACTATGTATTGGGTTTACAAAT
TGTTATGAGTGCCATCATCAAATCTATGGCCTCACTTTTACAAATTTCTC
TACTCATTGGTTTTGTAATTGTTATTTTCGCCATCATTTTCTTGTCTTTT
CTACCCGGAAAATTCCATTACACATGTTTCAAGAATGCAACTGAACCGTT
TCCTCAAGAATTATTTTGGGTTTACCGTCGGTTGGAATGGGTGAAAATGC
GGGACCAATGAAAGTCATCAAAGCTGCTAGAGTGTTACGTCCATTGAAAC
TTGTTTCTGGTGTACCAAGAAGCTTTGGAGGTCTATTTGCTGGCCATTTT
CATAGGAGAAGCTTGCGTCAAAATGCTAACTCAAGGTTTCATTTTACATG
CTGGTTCGTACATTCGAAACGGATGGAACTTGCTGGATTTCACTGTCGTT
GTTACAGGCTGTTCGATTCGTTTATTTTACTTGCCATCGTTGTGAACTGT
ATTATGATGGCAATGAGTGCTCCACTACCACTCAACGATACAAATGAGCT
GAACAATAGTATAATGACAGAACCAATGACGTACGAGCAATATGCAAAGG
ACTACCCAGGAAACCATTTCCTTGTCCTTGGTCCAACAAACCCTGTCCGT
AAAATCGCTTTCAAAATATCCACTTCAAAGACGATGGATGTTATGGATTA
TGATGGATATTATATGTTTTCGATTTATTGGCTTTTGAATGTCATTGGTG
CTCAATTCATGTTGAATTTAGTCTGTGGTGTCCTCAGCATCAAATAGAAG
CTGGTCGACTATGTTCCGAGGGGAGCTCAGGACGTCCATGTCCCGAGGGA
AGCATATGTAAAAGATACTGGGATGGTCCTAATTTTGGTGTGACAAATTT
CGATAATATTTTCAGTGCATGTCTGACTGTCTTTACGTGTATCACATGTG
AAGGGTGGACAGATACTATGTATTGGGTTTACAAATTGTTATGAGTGCCA
TCATCAAATCTATGGCCTCACTTTTACAAATTTCTCTACTCATTGGTTTT
GTAATTGTTATTTTCGCCATCATTTTCTTGTCTTTTCTACCCGGAAAATT
CCATTACACATGTTTCAAGAATGCAACTGAACCGTTTCCTCAAGAATTAT
TTTGGGTTTACCGTCGGTTGGAATGGGTGAAAATGCGGGACCAATGAAAG
TCATCAAAGCTGCTAGAGTGTTACGTCCATTGAAACTTGTTTCTGGTGTA
CCAAGAAGCTTTGGAGGTCTATTTGCTGGCCATTTTCATAGGAGAAGCTT
GCGTCAAAATGCTAACTCAAGGTTTCATTTTACATGCTGGTTCGTACATT
CGAAACGGATGGAACTTGCTGGATTTCACTGTCGTTGTTACAGGCTGTTC
GATTCGTTTATTTTACTTGCCATCGTTGTGAACTGTATTATGATGGCAAT
GAGTGCTCCACTACCACTCAACGATACAAATGAGCTGAACAATAGTATAA
TGACAGAACCAATGACGTACGAGCAATATGCAAAGGACTACCCAGGAAAC
CATTTCCTTGTCCTTGGTCCAACAAACCCTGTCCGTAAAATCGCTTTCAA
AATATCCACTTCAAAGACGATGGATGTTATGGATTATGATGGATATTATA
TGTTTTCGATTTATTGGCTTTTGAATGTCATTGGTGCTCAATTCATGTTG
AATTTAGTCTGTGGTGTCCTCAGCATCAAATAGAAGCTGGTCGACTATGT
TCCGAGGGGAGCTCAGGACGTCCATGTCCCGAGGGAAGCATATGTAAAAG
ATACTGGGATGGTCCTAATTTTGGTGTGACAAATTTCGATAATATTTTCA
GTGCATGTCTGACTGTCTTTACGTGTATCACATGTGAAGGGTGGACAGAT
ACTATGTATTGGGTTTACAAATTGTTATGAGTGCCATCATCAAATCTATG
GCCTCACTTTTACAAATTTCTCTACTCATTGGTTTTGTAATTGTTATTTT
CGCCATCATTTTCTTGTCTTTTCTACCCGGAAAATTCCATTACACATGTT
TCAAGAATGCAACTGAACCGTTTCCTCAAGAATTATTTTGGGTTTACCGT
CGGTTGGAATGGGTGAAAATGCGGGACCAATGAAAGTCATCAAAGCTGCT
AGAGTGTTACGTCCATTGAAACTTGTTTCTGGTGTACCAAGAAGCTTTGG
AGGTCTATTTGCTGGCCATTTTCATAGGAGAAGCTTGCGTCAAAATGCTA
ACTCAAGGTTTCATTTTACATGCTGGTTCGTACATTCGAAACGGATGGAA
CTTGCTGGATTTCACTGTCGTTGTTACAGGCTGTTCGATTCGTTTATTTT
ACTTGCCATCGTTGTGAACTGTATTATGATGGCAATGAGTGCTCCACTAC
CACTCAACGATACAAATGAGCTGAACAATAGTATAATGACAGAACCAATG
ACGTACGAGCAATATGCAAAGGACTACCCAGGAAACCATTTCCTTGTCCT
TGGTCCAACAAACCCTGTCCGTAAAATCGCTTTCAAAATATCCACTTCAA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011474XLOC_011474Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020428-proteinTCONS_00020428-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020428-exon-sc0000356-1575043694:119229..119374TCONS_00020428-exon-sc0000356-1575043694:119229..119374Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1575043694:117951..118091TCONS_00020428-exon-sc0000356-1575043694:117951..118091Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1575043694:117599..117703TCONS_00020428-exon-sc0000356-1575043694:117599..117703Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1575043694:116968..117107TCONS_00020428-exon-sc0000356-1575043694:116968..117107Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1575043694:116186..116292TCONS_00020428-exon-sc0000356-1575043694:116186..116292Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1575043694:115771..115941TCONS_00020428-exon-sc0000356-1575043694:115771..115941Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1575043694:115005..115192TCONS_00020428-exon-sc0000356-1575043694:115005..115192Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1575043694:114450..114559TCONS_00020428-exon-sc0000356-1575043694:114450..114559Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1510915933:119229..119374TCONS_00020428-exon-sc0000356-1510915933:119229..119374Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1510915933:117951..118091TCONS_00020428-exon-sc0000356-1510915933:117951..118091Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1510915933:117599..117703TCONS_00020428-exon-sc0000356-1510915933:117599..117703Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1510915933:116968..117107TCONS_00020428-exon-sc0000356-1510915933:116968..117107Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1510915933:116186..116292TCONS_00020428-exon-sc0000356-1510915933:116186..116292Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1510915933:115771..115941TCONS_00020428-exon-sc0000356-1510915933:115771..115941Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1510915933:115005..115192TCONS_00020428-exon-sc0000356-1510915933:115005..115192Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1510915933:114450..114559TCONS_00020428-exon-sc0000356-1510915933:114450..114559Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1491911889:119229..119374TCONS_00020428-exon-sc0000356-1491911889:119229..119374Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1491911889:117951..118091TCONS_00020428-exon-sc0000356-1491911889:117951..118091Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1491911889:117599..117703TCONS_00020428-exon-sc0000356-1491911889:117599..117703Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1491911889:116968..117107TCONS_00020428-exon-sc0000356-1491911889:116968..117107Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1491911889:116186..116292TCONS_00020428-exon-sc0000356-1491911889:116186..116292Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1491911889:115771..115941TCONS_00020428-exon-sc0000356-1491911889:115771..115941Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1491911889:115005..115192TCONS_00020428-exon-sc0000356-1491911889:115005..115192Clytia hemisphaericaexon
TCONS_00020428-exon-sc0000356-1491911889:114450..114559TCONS_00020428-exon-sc0000356-1491911889:114450..114559Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000356supercontigsc0000356:114450..119374 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.131145	0.407143	0.378488	0.733461	1.14789	0.925854	0.576687	0.193246	0.709628	6.08907	8.43757	2.23824	3.13826	1.05255	1.17411	6.53554	7.83407	3.13512	2.15887	0.437399	1.39181	2.45748	4.35498	0.523086	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005821Ion_trans_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
Blast
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BLAST of TCONS_00020428 vs. Swiss-Prot (Human)
Match: CAC1A (Voltage-dependent P/Q-type calcium channel subunit alpha-1A OS=Homo sapiens GN=CACNA1A PE=1 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 1.774e-65
Identity = 137/287 (47.74%), Postives = 185/287 (64.46%), Query Frame = 3 
Query:  246 NPVRKIAFKISTSKLFDSFILLAIVVNCIMMAMSAPLPLNDTNELNNSIEALEVYLLAIFIGEACVKMLTQGFILHAGSYIRNGWNLLDFTVVVTGILGLPSVGMGENAGPMKVIKAARVLRPLKLVSGVPSLQIVMSAIIKSMASLLQISXXXXXXXXXXXXXXXXXXPGKFHYTCFKNATEPFPQEYQIEAGRLCSEGSSGRPCPEGSICKRYWDGPNFGVTNFDNIFSACLTVFTCITCEGWTDTMYWTMDVMDYDGYYMFSIYWLLNVIGAQFMLNLVCGVLS 1106
            N VRK A KI+    F+  IL  I+ NCI++A+   LP +D   ++  ++  E Y + IF  EA +K++  GF  H GSY+RNGWN++DF VV+TGIL   +VG   +   ++ ++A RVLRPLKLVSG+PSLQ+V+ +I+K+M  LLQI LL+ F I+IFAII L F  GKFH TCF+  T+    + Q E+   C      R CP G+ C+ YW+GPN G+T FDNI  A LTVF CIT EGWTD +Y + D       +++ I   L +IG+ FMLNLV GVLS
Sbjct:   85 NVVRKYAKKITEWPPFEYMILATIIANCIVLALEQHLPDDDKTPMSERLDDTEPYFIGIFCFEAGIKIIALGFAFHKGSYLRNGWNVMDFVVVLTGILA--TVGTEFD---LRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMIPLLQIGLLLFFAILIFAIIGLEFYMGKFHTTCFEEGTD----DIQGESPAPCGTEEPARTCPNGTKCQPYWEGPNNGITQFDNILFAVLTVFQCITMEGWTDLLYNSNDASGNTWNWLYFI--PLIIIGSFFMLNLVLGVLS 360

HSP 2 Score: 103.219 bits (256), Expect = 1.731e-23
Identity = 76/268 (28.36%), Postives = 128/268 (47.76%), Query Frame = 3 
Query:  213 PGNHFLVLGPTNPVRKIAFKISTSKLFDSFILLAIVVNCIMMAMSAPLPLNDTNELNNSIEALEVYLLAIFIGEACVKMLTQGFILHAGSYIRNGWNLLDFTVVVTGILGLPSVG--MGENAGPMKVIKAARVLRPLKLVSGVPSLQIVMSAIIKSMASLLQISXXXXXXXXXXXXXXXXXXPGKFHYTCFKNATEPFPQEYQIEAGRLCSEGSSGRPCPEGSICKRYWDGPNFGVTNFDNIFSACLTVFTCITCEGWTDTMYWTMDV 1010
            P +   +L  TNP+R++   I   + F+  IL+ I ++ I +A   P+  N     NN +   +     +F  E  +KM+  G +LH G+Y R+ WN+LDF VV   ++     G   G++   +K ++  RVLRPLK +  +P L+ V   ++ S+ ++  I ++    + IFA++ +    GKF + C   + E    E       L  E +      E     R W    F   ++DN+  A LT+FT  T EGW   +  ++D 
Sbjct: 1220 PYSSMFILSTTNPLRRLCHYILNLRYFEMCILMVIAMSSIALAAEDPVQPNAPR--NNVLRYFDYVFTGVFTFEMVIKMIDLGLVLHQGAYFRDLWNILDFIVVSGALVAFAFTGNSKGKDINTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVFNILIVYMLFMFIFAVVAVQLFKGKF-FHCTDESKE---FEKDCRGKYLLYEKN------EVKARDREWKKYEF---HYDNVLWALLTLFTVSTGEGWPQVLKHSVDA 1472
The following BLAST results are available for this feature:
BLAST of TCONS_00020428 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAC1A1.774e-6547.74Voltage-dependent P/Q-type calcium channel subunit... [more]
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