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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020429 ID=TCONS_00020429|Name=TCONS_00020429|organism=Clytia hemisphaerica|type=transcript|length=2171bpRun BLAST on NCBI protein sequence of TCONS_00020429-protein >TCONS_00020429-protein ID=TCONS_00020429-protein|Name=TCONS_00020429-protein|organism=Clytia hemisphaerica|type=polypeptide|length=557bp MTTDSDNSDIDVCTVEDDNCLHTGLTVVAAETYIETDTSDNIEQVVPLTDRun BLAST on NCBI transcript from alignment at sc0000356:119449..130064- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020429 ID=TCONS_00020429|Name=TCONS_00020429|organism=Clytia hemisphaerica|type=transcript|length=10616bp|location=Sequence derived from alignment at sc0000356:119449..130064- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000356:119449..130064- >TCONS_00020429 ID=TCONS_00020429|Name=TCONS_00020429|organism=Clytia hemisphaerica|type=CDS|length=23436bp|location=Sequence derived from alignment at sc0000356:119449..130064- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020429 vs. Swiss-Prot (Human)
Match: ZZZ3 (ZZ-type zinc finger-containing protein 3 OS=Homo sapiens GN=ZZZ3 PE=1 SV=1) HSP 1 Score: 260.766 bits (665), Expect = 1.665e-74 Identity = 170/418 (40.67%), Postives = 243/418 (58.13%), Query Frame = 2
Query: 581 MESIQLAMKNNRDYQKLLKTLTVLEAQRVQAVKDYEELNRLKEMALADPLDFVKKIQEKTAPEFPKRQQVAKTPEINW---LHYLTAYSNETILPQITTRN----------SSKETDPFD--------EFNELDIFDD-MSSNSQDKAVRS----NEKTATFNQKWSVXXXXXXXXXXVMYPPEEVEARRWEKIAKGLGTRTAQQVSSRIQKYFLKLAKAKLPIPGRAPS---SASMNITKKKINPIS---YRRSTFFPTWQPSVFMKDDGEMGTSQSSVFYDDIEVSDEEDVPRELRDSPEYKELMELKRIKKYKEVFNEQTSTGITIHRGFMCDNCSTDPIVGVRWHCTGCPQDQENSLDFCNNCYQKPFENGTHTIDHQLIPIYEATEAAVDESYTTFEQKKFKYNYLDPNFVPT 1738
ES +A+K+N+DYQ+LL+T+ VLEAQR QAV+D E L R + AL +P+ FV+K+Q+K P Q+V + PEI W H L + E + TR ++ P D ++ L + D S+S+ + +R + K TFNQ W+VEEQ+KLE+LL+ YPPEEVE+RRW+KIA LG RTA+QV+SR+QKYF+KL KA +P+PGR P+ + + T ++ +P++ ++ STF + +P V+M +D + S + + SD+E +P R+ PEYKEL++ K K +++ Q +G H GF CDNC +PI GVRWHC CP E SLDFC++C E H DHQL PIY +E +D Y + YNYLDPN+ P
Sbjct: 490 FESDHVALKHNKDYQRLLQTIAVLEAQRSQAVQDLESLGRHQREALKNPIGFVEKLQKKADIGLPYPQRVVQLPEIVWDQYTHSLGNFEREFKNRKRHTRRVKLVFDKVGLPARPKSPLDPKKDGESLSYSMLPLSDGPEGSSSRPQMIRGRLCDDTKPETFNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAGIPVPGRTPNLYIYSKKSSTSRRQHPLNKHLFKPSTFMTSHEPPVYMDEDDDRSCFHSHMNTAVEDASDDESIPIMYRNLPEYKELLQFK-KLKKQKLQQMQAESGFVQHVGFKCDNCGIEPIQGVRWHCQDCP--PEMSLDFCDSCSDCLHETDIHKEDHQLEPIYR-SETFLDRDYCV--SQGTSYNYLDPNYFPA 901 The following BLAST results are available for this feature:
BLAST of TCONS_00020429 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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