TCONS_00020433 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020433
Unique NameTCONS_00020433
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1005

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020433 ID=TCONS_00020433|Name=TCONS_00020433|organism=Clytia hemisphaerica|type=transcript|length=1005bp
CTAGCAGGGCACGGTAATTATGTATTCGAGTTATGCAAAGTTCTAAAGGT
GTCGTGAACTGAAGGAGGATGATAATGTTTGTAAATgaaagattggaact
ttttgaGGTTACGGCGATTTAAGTTACAAGAGAGTCAACTGAAATATCAA
ATAATGGTAAAAAAGACTAAGCTCTAgcttagacggcccacttttcgccc
tgcctattctaattgtgaattaaaattggcATAAAGTGgactgtctaaag
tcaatgcattgccatctgcaatgacttctttcaatcttttccaagcaaag
gttttaactgccaactttgtgcccactttctgcctactctaataattaga
atagacagggtAGAAAGTCGGCaatctaaactagagctaaggtACTAAGC
ATAATCATACTAAAGTTACAGTCGTATAATCAGCAACGTTCGATTTAAAC
GGTATCGAATTATAATCTACCGGAGGAAGTTTCTTTTCCGGAGAATTCGG
AAAatattgttcttttcttttctcagaTTCTTTGCGTATCGAATCTCTAA
ATTGTTTGGTACTTAAGATATCTGAGTTCGTTCCATCGTTTGACAGAGAG
CTATTTGAATCGCTAGTGCCTATCGAACTTGTCGAATTTTGACTCGGTCT
TGGTTTTGTTGTGTTTGGCACAATATCTGGTCGGTAAAATACAGAATCTC
TATGATCGTTTGGTTTAGAGTTAAGCGAAACTCGTTTCGTATCTGGTGTA
CAATTTACAGACTCTCGTTTACACTTAGTGTCTTGTATCGAGTTTACAGA
ATTTCGCTTAttatctggtctgtaatttcttttttcgtGATTCGGGTTCG
GACAACCGTTTCCGTGACTTTCTCTCCTCTTAACACTGGTGGTGGTTTTA
TGTTTTAATTTCTCATGAACATCATATAATTCGACAACAACTTCGACAAA
CCTTTTCGAATTCGATTTATAAGATTTTGACTGATGATTTTTAAGAGTAT
CAGTG
Run BLAST on NCBI

transcript from alignment at sc0000356:188367..190119-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020433 ID=TCONS_00020433|Name=TCONS_00020433|organism=Clytia hemisphaerica|type=transcript|length=1753bp|location=Sequence derived from alignment at sc0000356:188367..190119- (Clytia hemisphaerica)
CTAGCAGGGCACGGTAATTATGTATTCGAGTTATGCAAAGTTCTAAAGGT
GTCGTGAACTGAAGGAGGATGATAATGTTTGTAAATGAAAGATTGGAACT
TTTTGAGGTTACGGCGATTTAAGTTACAAGAGAGTCAACTGAAATATCAA
ATAATGGTAAAAAAGACTAAGCTCTAGCTTAGACGGCCCACTTTTCGCCC
TGCCTATTCTAATTGTGAATTAAAATTGGCATAAAGTGGACTGTCTAAAG
TCAATGCATTGCCATCTGCAATGACTTCTTTCAATCTTTTCCAAGCAAAG
GTTTTAACTGCCAACTTTGTGCCCACTTTCTGCCTACTCTAATAATTAGA
ATAGACAGGGTAGAAAGTCGGCAATCTAAACTAGAGCTAAGGTACTAAGT
ATAATCATACTAATGTTACAGTCGTATAATCAGCAACGTTCGATTTAAAC
GGTATCGNGTGGCTGATATTGTATCATTTTAGTTACGCTAACAGGGCACG
GTAATTATGTATTCGAGTTATGCAAAGTTCTAAAGGTGTCGTGAACTGAA
GGAGGATGATAATGTTTGTAAATGAAAGATTGAAAGATTGGAACTTTTTG
AGGTTACGGCCATTTAAGTTACAACAGAGTCAACTGAAATATCCAATAAT
GGTAAAAAGACTAAGCTCTAGCTTAGACGGCCCACTTTTCGCCCTGCCTA
TTCTAATACACTCTTCTCGAGATGCATAAATTTATTGTTGTCCTCGTTTT
CAAACAGATTTTATTGCTATGAAATTATATATTCAAAGCAATTTAATTCC
CAAAAGGCAAACATTAATCCAAAACAAAAGTACTTGAAATTCAAAATGTC
TCATGAGGTGTAAACAACACAATTATCATTGTGAATATGTAATTTTATAG
CAATGAAGTCTGTTTGAAAACGAGGACAACAATAAATTTATGCATCTCGA
GAAGAGTGTATTGTGAATCAAAATTGGCATAAAGTGGACTGTCTAAAATC
AATGCATTGCCATCTGCAATGACTTCTTTCAATCTTTTCCAAGCAAAGGT
CTTAACTGCCAACTTTTAGCCCACTTTCTGCCTACTCTAACAATTAGAAA
AGGCAGGGTAGAAAGTCGACCGTCTAAACTAGAGCTAAGGTACTAAGCAT
AATCATACTAAAGTTACAGTCGTATAATCAGCAACGTTCGATTTAAACGG
TATCGAATTATAATCTACCGGAGGAAGTTTCTTTTCCGGAGAATTCGGAA
AATATTGTTCTTTTCTTTTCTCAGATTCTTTGCGTATCGAATCTCTAAAT
TGTTTGGTACTTAAGATATCTGAGTTCGTTCCATCGTTTGACAGAGAGCT
ATTTGAATCGCTAGTGCCTATCGAACTTGTCGAATTTTGACTCGGTCTTG
GTTTTGTTGTGTTTGGCACAATATCTGGTCGGTAAAATACAGAATCTCTA
TGATCGTTTGGTTTAGAGTTAAGCGAAACTCGTTTCGTATCTGGTGTACA
ATTTACAGACTCTCGTTTACACTTAGTGTCTTGTATCGAGTTTACAGAAT
TTCGCTTATTATCTGGTCTGTAATTTCTTTTTTCGTGATTCGGGTTCGGA
CAACCGTTTCCGTGACTTTCTCTCCTCTTAACACTGGTGGTGGTTTTATG
TTTTAATTTCTCATGAACATCATATAATTCGACAACAACTTCGACAAACC
TTTTCGAATTCGATTTATAAGATTTTGACTGATGATTTTTAAGAGTATCA
GTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011478XLOC_011478Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020433-exon-sc0000356-1575043694:189729..190119TCONS_00020433-exon-sc0000356-1575043694:189729..190119Clytia hemisphaericaexon
TCONS_00020433-exon-sc0000356-1575043694:188367..188980TCONS_00020433-exon-sc0000356-1575043694:188367..188980Clytia hemisphaericaexon
TCONS_00020433-exon-sc0000356-1510915933:189729..190119TCONS_00020433-exon-sc0000356-1510915933:189729..190119Clytia hemisphaericaexon
TCONS_00020433-exon-sc0000356-1510915933:188367..188980TCONS_00020433-exon-sc0000356-1510915933:188367..188980Clytia hemisphaericaexon
TCONS_00020433-exon-sc0000356-1491911889:189729..190119TCONS_00020433-exon-sc0000356-1491911889:189729..190119Clytia hemisphaericaexon
TCONS_00020433-exon-sc0000356-1491911889:188367..188980TCONS_00020433-exon-sc0000356-1491911889:188367..188980Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000356supercontigsc0000356:188367..190119 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.110823	0.10727	0.405908	0.456654	1.25708	0.842447	13.509	15.2077	8.45165	8.9561	8.14846	6.67861	0.712116	1.05344	0.141153	0.228572	0.362383	0.507535	1.77883	0.555221	0.237407	0.721003	0.247339	0.281253	0.801005	0.73523	0.0738507	0.486035	0.0568171	0.0589756
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020433 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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