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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020434 ID=TCONS_00020434|Name=TCONS_00020434|organism=Clytia hemisphaerica|type=transcript|length=1109bp
CNATCATCTTCATTTGTTGTCTTATGAAACGATTAGACTTTCAAGAGAAA
GAAGTAAAACCACGCCAACCTAAGGACGAAGTTCAACTGACAGAAAACTT
TTACAAACCACAACCTGACTTTCAAAACAACTATATCAACGATACCTTTA
CTAGTCAGAGAGGCCCTACCCTTGGTGATATACATATTACAGTTGAAGAA
CCTAAAGAGAATAAAACTACAAGCCATTTAAGTTTATCATCGGAGGAGTA
CAGGTCGAGTAATAACGATTTAAGACAACCTAATGGATTATCGAACGGCC
ACGCCAATAGTAAGGAAAACTTATCAACCGCCCCTCCGCCCCACGTGGTG
ACTGACGAATACGCTACTGTTAATAAACAACGGAAAGAGAAAGCACCCCG
TGAACACAACACGAAGGAACGCAAAGACCGTAAAAACCGACGAGACAAAA
AAGATGGAGAACAAAAGAAGTCTAGGTCTAAAAATCGTGCCTATGAAGAA
GTTGGGGAGAATAGTAAAGGGGCATGGGACCAAGCTAATGACTCACGTGC
TTCTGCCACAAATAGAAACTATGATAACGAAGAATATTGTTAATGCTTAT
TTACAACTTTAAAGAATTGGAGTTTTTGTTGTGCGAACTTTCATACGAGT
ATGAGAAAGCTTGGTCAATCTTTATTTGCATTATTGCAAAGCGTAAATGT
TGAAAGAAAGAAAACGCCATCATGGAAATCGCTTTATCCCCGCATCATTA
TAATTTTGAATACATTTTTCAGTATCCCAGCTTGTACACGTTGTCTTCCA
AAAGCAATAAAACATAGTGATTGACCTGAAATTCAATGTCCGGTTGGCCC
TTGAGCTCATAAGATTCACTTTTGTTAGCAAAGGCAAAGTTATTCGATGG
ATCAGGCAAAAATATTATCAGCCAAGTTGAAGTTACATGTgcaaaaactg
aaaatctttAACATAAACAATGATAAATATTATAATACATCAAATGTAAT
AAGTTAAATAAAATTGTTATTTAGTCTCGATAGAATTTTGTATATCATAT
ATATGTCTTGATATTGTatcatgaaataaaataaaatagtgTTGTCAAGT
ATTGTAAAc Run BLAST on NCBI transcript from alignment at sc0000356:236181..237893- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020434 ID=TCONS_00020434|Name=TCONS_00020434|organism=Clytia hemisphaerica|type=transcript|length=1713bp|location=Sequence derived from alignment at sc0000356:236181..237893- (Clytia hemisphaerica)
CNATCATCTTCATTTGTTGTCTTATGTAAGTGTAATTTCCATTCCAACAT
GGCGTTTCTAAATCTAGATTGCCATGCATTCGAAACCATCTACTATCCTA
AGAATCGGGTTTGGTAGACGTCGCTAAAGGTTTTCGTCACAATAAAGTCC
AATTCAATTTGAATAGGCAGGGCAGAAAGTCGACTGTCGAAACTAGAGCT
AAGAGTTTCAAACACCTTCAAGCCGACTTGTTAAATGTTGTCGGAAAATT
GTTTAGCTTTTTCGTCAAAAACAGTTTAACATTTTTTCATTGCAGAAGTA
CCGACTAACATTTTATTCCAAATTTCCATTCATTTGTTTACCACGCAGGT
TATAATAACAAACTAGCCAATAATTTTCACACGCACCATTTTTCTCAGGA
AAAGGTTAAATTCTTAGAGAGTTTAGCGATTGATGACGCGTCTCTGCTCT
TTCTAAAGCCACAAGTATAACCTGCACACGAGGATATTAAGTTACTTAAG
ATTTTGACTGAAAAACGAACGACGTATGATAGACTAACAAACTGACTTTC
ATCATTAACCAGCCTAACAAAGTGACTGACTAACAATAATTTGACTAACC
CACAACTAACTGACTTCTTTTTACAAAAGGAAACGATTAGACTTTCAAGA
GAAAGAAGTAAAACCACGCCAACCTAAGGACGAAGTTCAACTGACAGAAA
ACTTTTACAAACCACAACCTGACTTTCAAAACAACTATATCAACGATACC
TTTACTAGTCAGAGAGGCCCTACCCTTGGTGATATACATATTACAGTTGA
AGAACCTAAAGAGAATAAAACTACAAGCCATTTAAGTTTATCATCGGAGG
AGTACAGGTCGAGTAATAACGATTTAAGACAACCTAATGGATTATCGAAC
GGCCACGCCAATAGTAAGGAAAACTTATCAACCGCCCCTCCGCCCCACGT
GGTGACTGACGAATACGCTACTGTTAATAAACAACGGAAAGAGAAAGCAC
CCCGTGAACACAACACGAAGGAACGCAAAGACCGTAAAAACCGACGAGAC
AAAAAAGATGGAGAACAAAAGAAGTCTAGGTCTAAAAATCGTGCCTATGA
AGAAGTTGGGGAGAATAGTAAAGGGGCATGGGACCAAGCTAATGACTCAC
GTGCTTCTGCCACAAATAGAAACTATGATAACGAAGAATATTGTTAATGC
TTATTTACAACTTTAAAGAATTGGAGTTTTTGTTGTGCGAACTTTCATAC
GAGTATGAGAAAGCTTGGTCAATCTTTATTTGCATTATTGCAAAGCGTAA
ATGTTGAAAGAAAGAAAACGCCATCATGGAAATCGCTTTATCCCCGCATC
ATTATAATTTTGAATACATTTTTCAGTATCCCAGCTTGTACACGTTGTCT
TCCAAAAGCAATAAAACATAGTGATTGACCTGAAATTCAATGTCCGGTTG
GCCCTTGAGCTCATAAGATTCACTTTTGTTAGCAAAGGCAAAGTTATTCG
ATGGATCAGGCAAAAATATTATCAGCCAAGTTGAAGTTACATGTGCAAAA
ACTGAAAATCTTTAACATAAACAATGATAAATATTATAATACATCAAATG
TAATAAGTTAAATAAAATTGTTATTTAGTCTCGATAGAATTTTGTATATC
ATATATATGTCTTGATATTGTATCATGAAATAAAATAAAATAGTGTTGTC
AAGTATTGTAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020434-exon-sc0000356-1575043694:237869..237893 | TCONS_00020434-exon-sc0000356-1575043694:237869..237893 | Clytia hemisphaerica | exon |
| TCONS_00020434-exon-sc0000356-1575043694:236181..237264 | TCONS_00020434-exon-sc0000356-1575043694:236181..237264 | Clytia hemisphaerica | exon |
| TCONS_00020434-exon-sc0000356-1510915933:237869..237893 | TCONS_00020434-exon-sc0000356-1510915933:237869..237893 | Clytia hemisphaerica | exon |
| TCONS_00020434-exon-sc0000356-1510915933:236181..237264 | TCONS_00020434-exon-sc0000356-1510915933:236181..237264 | Clytia hemisphaerica | exon |
| TCONS_00020434-exon-sc0000356-1491911889:237869..237893 | TCONS_00020434-exon-sc0000356-1491911889:237869..237893 | Clytia hemisphaerica | exon |
| TCONS_00020434-exon-sc0000356-1491911889:236181..237264 | TCONS_00020434-exon-sc0000356-1491911889:236181..237264 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000356 | supercontig | sc0000356:236181..237893 - |
Blast
The following BLAST results are available for this feature:
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