TCONS_00020438 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020438
Unique NameTCONS_00020438
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length261

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020438 ID=TCONS_00020438|Name=TCONS_00020438|organism=Clytia hemisphaerica|type=transcript|length=261bp
GTATGGCTTAAAAAATTCTTCTTAGTCAGATTTGGCGATATTTTTGGTAT
TGCTACTGTGCCTGACTATGCATCTCCGTGCAAGCAATTAGGAAAAAATC
AAACACTGTGTCATTCATGGCACccttacaacaacaacaacaacaacaac
aacaacaacactgGTACCTCAACAAGATTGGTGGTCTCGATACtgagaaa
aatcaatttcaagtAACCTTCAAGAAAGTAATTACTCCAGACTTCAGTGG
ATGCAAACGGG
Run BLAST on NCBI

transcript from alignment at sc0000356:8724..8984

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020438 ID=TCONS_00020438|Name=TCONS_00020438|organism=Clytia hemisphaerica|type=transcript|length=261bp|location=Sequence derived from alignment at sc0000356:8724..8984 (Clytia hemisphaerica)
CCCGTTTGCATCCACTGAAGTCTGGAGTAATTACTTTCTTGAAGGTTact
tgaaattgatttttctcaGTATCGAGACCACCAATCTTGTTGAGGTACca
gtgttgttgttgttgttgttgttgttgttgttgtaaggGTGCCATGAATG
ACACAGTGTTTGATTTTTTCCTAATTGCTTGCACGGAGATGCATAGTCAG
GCACAGTAGCAATACCAAAAATATCGCCAAATCTGACTAAGAAGAATTTT
TTAAGCCATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011481XLOC_011481Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020438-exon-sc0000356-1491911889:8724..8984TCONS_00020438-exon-sc0000356-1491911889:8724..8984Clytia hemisphaericaexon
TCONS_00020438-exon-sc0000356-1510915933:8724..8984TCONS_00020438-exon-sc0000356-1510915933:8724..8984Clytia hemisphaericaexon
TCONS_00020438-exon-sc0000356-1575043694:8724..8984TCONS_00020438-exon-sc0000356-1575043694:8724..8984Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000356supercontigsc0000356:8724..8984 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.63057	4.39291	0.716296	0	0	1.6627	1.5566	0.544906	0	0	0.430655	1.29017	0.893235	0	0	0	0	0	0	0	0	0	0	0	0.619612	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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