TCONS_00020440 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020440
Unique NameTCONS_00020440
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length665

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020440 ID=TCONS_00020440|Name=TCONS_00020440|organism=Clytia hemisphaerica|type=transcript|length=665bp
AATTTTGAACGTTAGTTTTCTAAGAAAGGTTGGCAAAGCGTGAACAATTT
GGAGAATTGTTGAGAACCGTGATTCTTTGAGGAGAGGTGTAACAAACAGA
GTATTTTGGAGGGAGTGAATGTGGCAAACAGATTTGGCAAACAAAAAACT
GCGGAGAGCGTGGTATGACTGGTGGTATCTTTGAATTGAGTTTTCCTGGA
GGGGTGTTGCAAACCGTGAACCTGCTGAGAGAGATCTAGTGGTATTTTGG
GAGTGAATTTTCTAGGTTCGGCAAGCCATACAACTGTTGGGAGAAATGGG
AAGATTTCATTTAGAAAAACAGTGGTATTTTGGCAAGGAAATCTCTTACA
AGAGGTGTAACAAACAGAGAACCTTGGATAGCGTGGTAATAATTAATTAG
AAAGTGGTGAAATTTTATGGTATTTTGGGAGCGAATTTTCTAGGAGATTT
GGCATGACAAGCCATGGAACTGTGGAGAGAAGTGGTCATGATTTATTGAC
AATAGTATTTAGACAATGAGCTGATGTTAGACATGTGTGAACCTGTGGCA
CACAACTGTCAAGAAACTTGTTTTAATTCTTTGAAATTTGGATAAGACAA
GTGGTTTTTATTGGTGGTTGAATTTTTTAGGAGAGGTGGGGTAAATCATG
CAGCTATTGAGGAAA
Run BLAST on NCBI

transcript from alignment at sc0000356:22466..23130

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020440 ID=TCONS_00020440|Name=TCONS_00020440|organism=Clytia hemisphaerica|type=transcript|length=665bp|location=Sequence derived from alignment at sc0000356:22466..23130 (Clytia hemisphaerica)
TTTCCTCAATAGCTGCATGATTTACCCCACCTCTCCTAAAAAATTCAACC
ACCAATAAAAACCACTTGTCTTATCCAAATTTCAAAGAATTAAAACAAGT
TTCTTGACAGTTGTGTGCCACAGGTTCACACATGTCTAACATCAGCTCAT
TGTCTAAATACTATTGTCAATAAATCATGACCACTTCTCTCCACAGTTCC
ATGGCTTGTCATGCCAAATCTCCTAGAAAATTCGCTCCCAAAATACCATA
AAATTTCACCACTTTCTAATTAATTATTACCACGCTATCCAAGGTTCTCT
GTTTGTTACACCTCTTGTAAGAGATTTCCTTGCCAAAATACCACTGTTTT
TCTAAATGAAATCTTCCCATTTCTCCCAACAGTTGTATGGCTTGCCGAAC
CTAGAAAATTCACTCCCAAAATACCACTAGATCTCTCTCAGCAGGTTCAC
GGTTTGCAACACCCCTCCAGGAAAACTCAATTCAAAGATACCACCAGTCA
TACCACGCTCTCCGCAGTTTTTTGTTTGCCAAATCTGTTTGCCACATTCA
CTCCCTCCAAAATACTCTGTTTGTTACACCTCTCCTCAAAGAATCACGGT
TCTCAACAATTCTCCAAATTGTTCACGCTTTGCCAACCTTTCTTAGAAAA
CTAACGTTCAAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011483XLOC_011483Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020440-exon-sc0000356-1491911889:22466..23130TCONS_00020440-exon-sc0000356-1491911889:22466..23130Clytia hemisphaericaexon
TCONS_00020440-exon-sc0000356-1510915933:22466..23130TCONS_00020440-exon-sc0000356-1510915933:22466..23130Clytia hemisphaericaexon
TCONS_00020440-exon-sc0000356-1575043694:22466..23130TCONS_00020440-exon-sc0000356-1575043694:22466..23130Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000356supercontigsc0000356:22466..23130 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.847193	1.22708	0.0880915	0.105613	0.524602	0.540747	1.1003	1.68559	1.18012	1.68836	2.44354	1.08615	0.569181	0.454422	0.176714	0.172411	0	0.838096	0.248116	0.0865452	0.445559	0.267542	0.267619	1.04214	0.334131	0.223653	1.02744	1.18529	0.172708	0.0879813
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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