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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020441 ID=TCONS_00020441|Name=TCONS_00020441|organism=Clytia hemisphaerica|type=transcript|length=1334bp
TGCCCTGTAAATTTGCTATTTCTGTCAAAAGTTGGCATTTTCAAGGCCAT
AGTAACTGACTTTTGGCTGATTCGTGAAATTTTAAATCGACACAAAATAA
TTGAAGCTTGCTGTGAGGTTGAGCCAGTGCgattagcacgttcgacagtt
acATAATCAAGTATAATAATGAATAGGTAGGGCGCTAGTGTATCACCTTG
TAATACACCTGCCACAATGTTAAAGTATTCAGTCTCACCATCTGTAGATA
CTACTTTCGCTCGTGTATCCTTGTAAAGAATGTCAATGGTATTAATCAGT
TCATTAGGTATACCGTATGCTGCCAAAACCTTTAGCATCTTACCACGATG
GATGCTATCAAATGCTTTGCGGAAGTCAAGAAATAAAATAACCGCGGGAA
GATGTCTTGCCTTGACGCCTTCAATCCAAAGCCTTCTTAGGGCGAGGATT
TGTGATTGAGTTGAGCGGCCGGGGCGGAAGCCATTTTGATTCGATCGGAG
ATTTTTGTCGAGTTTGGGTTGAATGCGGTTTAGCATCATTCGGTTGACAA
GTCTTGCTGAGATAGCGTTTAGAGATATGCCTCGATAGTTTCCAGTCTTA
CTTAGGTCTCCTTTCTTAGGGACGGGTATTATGTTGCTTGTGGACCATTG
GGATGGTTTGTCGTGATTCAGTAGCAATCTTTTCGCAATATTCAGTAAAA
TATCTTCTAGATTGCATTTTTTGATAACTTCGAGTGGAATATTGTCAGGA
CCGGGCGCTTTGTTTAGTGAGATTCtatcttttgcttttttgtaTTCATC
AATAGTGAATTCACCCGTTTTGAAATCTAGGTCATCAAATACGGTCTGGA
TAATTTCGTTTTCGTCGTCAATAACAGGCTCTTGTCCAAGTAGTTGTTGG
AAGTGATTGAACCATTTCTGGATTCTTTCACGTCTGTCTTTTCCTTCAAT
GATACCACTTTGGCTTTTTTTTCTGTCTGACATATATTTATGAGTCTCCA
ACAATCAGAATGTTTTTGTGTACTTGCCGATTCTTCTATGGCTGCTATGT
CGTTACTTaattgcggaacgaccgttttgagggcgcgaagcgcaCGAATA
GGGAGcgtagcatcctttctctagatctgcgcgtggcgtaaaaaaatctg
tatatgtacgaaaatttctgaaaatgagccggtggaatggcgaaatatcg
actttgcttcgtgttgtatggggttaaaattagtttagcactatttgaag
tatttgtttcataaattacttattttaatagaatatAATCTATGTTTTGA
GTATTATAATGCAAGATCTTTTATGAAAATGGCA Run BLAST on NCBI protein sequence of TCONS_00020441-protein >TCONS_00020441-protein ID=TCONS_00020441-protein|Name=TCONS_00020441-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MSDRKKSQSGIIEGKDRRERIQKWFNHFQQLLGQEPVIDDENEIIQTVFD
DLDFKTGEFTIDEYKKAKDRISLNKAPGPDNIPLEVIKKCNLEDILLNIA
KRLLLNHDKPSQWSTSNIIPVPKKGDLSKTGNYRGISLNAISARLVNRMM
LNRIQPKLDKNLRSNQNGFRPGRSTQSQILALRRLWIEGVKARHLPAVIL
FLDFRKAFDSIHRGKMLKVLAAYGIPNELINTIDILYKDTRAKVVSTDGE
TEYFNIVAGVLQGDTLAPYLFIIILDYVTVERANRTGSTSQQASIILCRF
KISRISQKSVTMALKMPTFDRNSKFTG Run BLAST on NCBI transcript from alignment at sc0000356:68085..69418 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020441 ID=TCONS_00020441|Name=TCONS_00020441|organism=Clytia hemisphaerica|type=transcript|length=1334bp|location=Sequence derived from alignment at sc0000356:68085..69418 (Clytia hemisphaerica)
TGCCATTTTCATAAAAGATCTTGCATTATAATACTCAAAACATAGATTat
attctattaaaataagtaatttatgaaacaaatacttcaaatagtgctaa
actaattttaaccccatacaacacgaagcaaagtcgatatttcgccattc
caccggctcattttcagaaattttcgtacatatacagatttttttacgcc
acgcgcagatctagagaaaggatgctacgCTCCCTATTCGtgcgcttcgc
gccctcaaaacggtcgttccgcaattAAGTAACGACATAGCAGCCATAGA
AGAATCGGCAAGTACACAAAAACATTCTGATTGTTGGAGACTCATAAATA
TATGTCAGACAGAAAAAAAAGCCAAAGTGGTATCATTGAAGGAAAAGACA
GACGTGAAAGAATCCAGAAATGGTTCAATCACTTCCAACAACTACTTGGA
CAAGAGCCTGTTATTGACGACGAAAACGAAATTATCCAGACCGTATTTGA
TGACCTAGATTTCAAAACGGGTGAATTCACTATTGATGAAtacaaaaaag
caaaagataGAATCTCACTAAACAAAGCGCCCGGTCCTGACAATATTCCA
CTCGAAGTTATCAAAAAATGCAATCTAGAAGATATTTTACTGAATATTGC
GAAAAGATTGCTACTGAATCACGACAAACCATCCCAATGGTCCACAAGCA
ACATAATACCCGTCCCTAAGAAAGGAGACCTAAGTAAGACTGGAAACTAT
CGAGGCATATCTCTAAACGCTATCTCAGCAAGACTTGTCAACCGAATGAT
GCTAAACCGCATTCAACCCAAACTCGACAAAAATCTCCGATCGAATCAAA
ATGGCTTCCGCCCCGGCCGCTCAACTCAATCACAAATCCTCGCCCTAAGA
AGGCTTTGGATTGAAGGCGTCAAGGCAAGACATCTTCCCGCGGTTATTTT
ATTTCTTGACTTCCGCAAAGCATTTGATAGCATCCATCGTGGTAAGATGC
TAAAGGTTTTGGCAGCATACGGTATACCTAATGAACTGATTAATACCATT
GACATTCTTTACAAGGATACACGAGCGAAAGTAGTATCTACAGATGGTGA
GACTGAATACTTTAACATTGTGGCAGGTGTATTACAAGGTGATACACTAG
CGCCCTACCTATTCATTATTATACTTGATTATgtaactgtcgaacgtgct
aatcGCACTGGCTCAACCTCACAGCAAGCTTCAATTATTTTGTGTCGATT
TAAAATTTCACGAATCAGCCAAAAGTCAGTTACTATGGCCTTGAAAATGC
CAACTTTTGACAGAAATAGCAAATTTACAGGGCA Coding sequence (CDS) from alignment at sc0000356:68085..69418 >TCONS_00020441 ID=TCONS_00020441|Name=TCONS_00020441|organism=Clytia hemisphaerica|type=CDS|length=981bp|location=Sequence derived from alignment at sc0000356:68085..69418 (Clytia hemisphaerica)
ATGTCAGACAGAAAAAAAAGCCAAAGTGGTATCATTGAAGGAAAAGACAG
ACGTGAAAGAATCCAGAAATGGTTCAATCACTTCCAACAACTACTTGGAC
AAGAGCCTGTTATTGACGACGAAAACGAAATTATCCAGACCGTATTTGAT
GACCTAGATTTCAAAACGGGTGAATTCACTATTGATGAAtacaaaaaagc
aaaagataGAATCTCACTAAACAAAGCGCCCGGTCCTGACAATATTCCAC
TCGAAGTTATCAAAAAATGCAATCTAGAAGATATTTTACTGAATATTGCG
AAAAGATTGCTACTGAATCACGACAAACCATCCCAATGGTCCACAAGCAA
CATAATACCCGTCCCTAAGAAAGGAGACCTAAGTAAGACTGGAAACTATC
GAGGCATATCTCTAAACGCTATCTCAGCAAGACTTGTCAACCGAATGATG
CTAAACCGCATTCAACCCAAACTCGACAAAAATCTCCGATCGAATCAAAA
TGGCTTCCGCCCCGGCCGCTCAACTCAATCACAAATCCTCGCCCTAAGAA
GGCTTTGGATTGAAGGCGTCAAGGCAAGACATCTTCCCGCGGTTATTTTA
TTTCTTGACTTCCGCAAAGCATTTGATAGCATCCATCGTGGTAAGATGCT
AAAGGTTTTGGCAGCATACGGTATACCTAATGAACTGATTAATACCATTG
ACATTCTTTACAAGGATACACGAGCGAAAGTAGTATCTACAGATGGTGAG
ACTGAATACTTTAACATTGTGGCAGGTGTATTACAAGGTGATACACTAGC
GCCCTACCTATTCATTATTATACTTGATTATgtaactgtcgaacgtgcta
atcGCACTGGCTCAACCTCACAGCAAGCTTCAATTATTTTGTGTCGATTT
AAAATTTCACGAATCAGCCAAAAGTCAGTTACTATGGCCTTGAAAATGCC
AACTTTTGACAGAAATAGCAAATTTACAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020441-exon-sc0000356-1491911889:68085..69418 | TCONS_00020441-exon-sc0000356-1491911889:68085..69418 | Clytia hemisphaerica | exon |
| TCONS_00020441-exon-sc0000356-1510915933:68085..69418 | TCONS_00020441-exon-sc0000356-1510915933:68085..69418 | Clytia hemisphaerica | exon |
| TCONS_00020441-exon-sc0000356-1575043694:68085..69418 | TCONS_00020441-exon-sc0000356-1575043694:68085..69418 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000356 | supercontig | sc0000356:68085..69418 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
BLAST of TCONS_00020441 vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 2.426e-19 Identity = 65/205 (31.71%), Postives = 103/205 (50.24%), Query Frame = -1
Query: 156 KAPGPDNIPLEVIKKCNLEDI--LLNIAKRLLLNHDKPSQWSTSNIIPVPKKG-DLSKTGNYRGISLNAISARLVNRMMLNRIQPKLDKNLRSNQNGFRPGRSTQSQILALRRLWIEGVKARHLPAVILFLDFRKAFDSIHRGKMLKVLAAYGIPNELINTIDILYKDTRAKVVSTDGETEYFNIVAGVLQGDTLAPYLFIIILD 761
K+PGPD E ++ E + LL + + + P+ + ++II +PK G D +K N+R ISL I A+++N+++ NRIQ + K + +Q GF PG I + +A+ VI+ +D KAFD I + MLK L GI + I +Y A ++ + E F + G QG L+P LF I+L+
Sbjct: 469 KSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLE 673
The following BLAST results are available for this feature:
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