TCONS_00020451 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020451
Unique NameTCONS_00020451
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1816

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020451 ID=TCONS_00020451|Name=TCONS_00020451|organism=Clytia hemisphaerica|type=transcript|length=1816bp
TTAAATTTGATCCGTTGGCTGGAACTTATTCATAGAAGTTGCCTACTCAA
GCTTCAAAGACATCGTGCAGTCGTACAGAAGATTTAATACTTTGAATTTG
ATCCGTTGGCTGAAACATATTCATAGAAGACCTGGTTTAAAGTTATTGTT
TGTTACCTAGACTGAAATATCGATCGAGGATCTCGCACATCGATCACAAC
ATTATAGAAAAAATTCACTTGCTTGACATTTGTTCGCAAACTCATCTTTT
CAGTAATACCTTCTAAAGACTTACTATCAACAACACCATGTTTCTGAAGT
CTTCAATTTCCAGTTCCCAAGTGGCACATCGTCATTATTCTTTACGTGGC
ACCTCATCAAAAGGTGAAAGTTATTCACAACATCGTGTCATCAAACGAAC
CAAAACTGGTTCCATTCATACTACTTCCATCCTGGAGGAAGGTTGTCCAC
ATGGTACGTTAGTATCTAAAAGTTTTGACGAGACTGATGAAAATTACAGC
CTTTTGAATTATCTTGGTGATTCGATTGTCTCAGCTGGTGATAATGCCAG
TCCGCGATTTCCCCGACGGCTCAGAGTCCCGACCTTATCCTCCCTACCAT
CAGTCCGGTCATCAATATTGTCTCTTGGGACCACAATCGGGGAccagaaa
cgaatcaatataatAGTACAAGGCAAACTATACCAAACTTTTGAAGAGAC
TTTAGATCGTCACTCGACAACATTGCTGGGGACTAAAAATGATCGTGATG
TTTTTTATGATCCGGTCAGAAAAGCATATGTTTTTGAAGACCATTGTCAT
CGCTCCTTCGACGCCATTTTATTCTATTATCAATCAAACGGCATATTATC
AAGACCCAGTGACGTCACTCGTATGCATTTCATCGAGGAATTAGAGTTCT
TCAGAATAACCAAATTCATGGATAACAGACAAGAGCAGGACGCTTACCAT
TTAAAAGAACTTATGAAAGAGAAAATTGTTGAGGAACCTAAGCTATTCCG
TGAAAAAGCATGGATGTTGTTCAGACACCAAAACGAAAGTTGTTTAGGAC
GCCTTTGGACTCTATTTCACCTTATAATCACAATCATTTCAGTATTAATC
ATTTGTACAAAAACTCTCCCGATTGGGATAAACCCAACCCATGTTTTTCT
TGCAGATTTCACAATCAACATGATATACACTCTTGAACTTGGAGGCTTGC
TGCTATTCACACCAAACATTAAACAATATTTTCTCAGTATTGTCGGCTTT
ATGGATATCGTGACTTCAgtttcttattactttttcttcttctttttcat
ctttggTGTATGGCAATATACGCTCAACAGAATCTGCAATTTCTTTTTAA
CATTTCGAATTTTCAAGATGTTTAAGTTCTGTGAAAGCGCACGTTATATT
TTATACACATTAACGGAGACACGATACTATTTACAATTGTTCGCTACTTC
GGCTACCATTATATTTTTCTGGTTTGCCATATTGATTTACCTGGTTGAAA
ACGGGTTCCGTAACGGCCCCGTAAATGAACATCCGGCTTCTATAAACAGT
ATCGGTGACGGTGTATGGTATATCATTATAACCTGTACGGGAGTCGGGTA
CGGGGACATGTACCCGATGACCCTACCCGGAAAAATCCTGGGTTGTGCGT
TTTGTTTGTTGGGCTTACTACTGTTTTGCCTACCGACGTCTGTTTTGATG
AACAAATTTATCGATTTTTATTTCCTGGCGGAAGCTTACGATAAGGAAGA
AGAAGGACGTGCCAAGATTTTGGAAGCCAGAGAGAATTTGATGGACGGTA
AATAGCTGTTGAAACT
Run BLAST on NCBI

protein sequence of TCONS_00020451-protein

>TCONS_00020451-protein ID=TCONS_00020451-protein|Name=TCONS_00020451-protein|organism=Clytia hemisphaerica|type=polypeptide|length=505bp
MFLKSSISSSQVAHRHYSLRGTSSKGESYSQHRVIKRTKTGSIHTTSILE
EGCPHGTLVSKSFDETDENYSLLNYLGDSIVSAGDNASPRFPRRLRVPTL
SSLPSVRSSILSLGTTIGDQKRINIIVQGKLYQTFEETLDRHSTTLLGTK
NDRDVFYDPVRKAYVFEDHCHRSFDAILFYYQSNGILSRPSDVTRMHFIE
ELEFFRITKFMDNRQEQDAYHLKELMKEKIVEEPKLFREKAWMLFRHQNE
SCLGRLWTLFHLIITIISVLIICTKTLPIGINPTHVFLADFTINMIYTLE
LGGLLLFTPNIKQYFLSIVGFMDIVTSVSYYFFFFFFIFGVWQYTLNRIC
NFFLTFRIFKMFKFCESARYILYTLTETRYYLQLFATSATIIFFWFAILI
YLVENGFRNGPVNEHPASINSIGDGVWYIIITCTGVGYGDMYPMTLPGKI
LGCAFCLLGLLLFCLPTSVLMNKFIDFYFLAEAYDKEEEGRAKILEAREN
LMDGK
Run BLAST on NCBI

transcript from alignment at sc0000356:221215..223030

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020451 ID=TCONS_00020451|Name=TCONS_00020451|organism=Clytia hemisphaerica|type=transcript|length=1816bp|location=Sequence derived from alignment at sc0000356:221215..223030 (Clytia hemisphaerica)
AGTTTCAACAGCTATTTACCGTCCATCAAATTCTCTCTGGCTTCCAAAAT
CTTGGCACGTCCTTCTTCTTCCTTATCGTAAGCTTCCGCCAGGAAATAAA
AATCGATAAATTTGTTCATCAAAACAGACGTCGGTAGGCAAAACAGTAGT
AAGCCCAACAAACAAAACGCACAACCCAGGATTTTTCCGGGTAGGGTCAT
CGGGTACATGTCCCCGTACCCGACTCCCGTACAGGTTATAATGATATACC
ATACACCGTCACCGATACTGTTTATAGAAGCCGGATGTTCATTTACGGGG
CCGTTACGGAACCCGTTTTCAACCAGGTAAATCAATATGGCAAACCAGAA
AAATATAATGGTAGCCGAAGTAGCGAACAATTGTAAATAGTATCGTGTCT
CCGTTAATGTGTATAAAATATAACGTGCGCTTTCACAGAACTTAAACATC
TTGAAAATTCGAAATGTTAAAAAGAAATTGCAGATTCTGTTGAGCGTATA
TTGCCATACAccaaagatgaaaaagaagaagaaaaagtaataagaaacTG
AAGTCACGATATCCATAAAGCCGACAATACTGAGAAAATATTGTTTAATG
TTTGGTGTGAATAGCAGCAAGCCTCCAAGTTCAAGAGTGTATATCATGTT
GATTGTGAAATCTGCAAGAAAAACATGGGTTGGGTTTATCCCAATCGGGA
GAGTTTTTGTACAAATGATTAATACTGAAATGATTGTGATTATAAGGTGA
AATAGAGTCCAAAGGCGTCCTAAACAACTTTCGTTTTGGTGTCTGAACAA
CATCCATGCTTTTTCACGGAATAGCTTAGGTTCCTCAACAATTTTCTCTT
TCATAAGTTCTTTTAAATGGTAAGCGTCCTGCTCTTGTCTGTTATCCATG
AATTTGGTTATTCTGAAGAACTCTAATTCCTCGATGAAATGCATACGAGT
GACGTCACTGGGTCTTGATAATATGCCGTTTGATTGATAATAGAATAAAA
TGGCGTCGAAGGAGCGATGACAATGGTCTTCAAAAACATATGCTTTTCTG
ACCGGATCATAAAAAACATCACGATCATTTTTAGTCCCCAGCAATGTTGT
CGAGTGACGATCTAAAGTCTCTTCAAAAGTTTGGTATAGTTTGCCTTGTA
CTattatattgattcgtttctggTCCCCGATTGTGGTCCCAAGAGACAAT
ATTGATGACCGGACTGATGGTAGGGAGGATAAGGTCGGGACTCTGAGCCG
TCGGGGAAATCGCGGACTGGCATTATCACCAGCTGAGACAATCGAATCAC
CAAGATAATTCAAAAGGCTGTAATTTTCATCAGTCTCGTCAAAACTTTTA
GATACTAACGTACCATGTGGACAACCTTCCTCCAGGATGGAAGTAGTATG
AATGGAACCAGTTTTGGTTCGTTTGATGACACGATGTTGTGAATAACTTT
CACCTTTTGATGAGGTGCCACGTAAAGAATAATGACGATGTGCCACTTGG
GAACTGGAAATTGAAGACTTCAGAAACATGGTGTTGTTGATAGTAAGTCT
TTAGAAGGTATTACTGAAAAGATGAGTTTGCGAACAAATGTCAAGCAAGT
GAATTTTTTCTATAATGTTGTGATCGATGTGCGAGATCCTCGATCGATAT
TTCAGTCTAGGTAACAAACAATAACTTTAAACCAGGTCTTCTATGAATAT
GTTTCAGCCAACGGATCAAATTCAAAGTATTAAATCTTCTGTACGACTGC
ACGATGTCTTTGAAGCTTGAGTAGGCAACTTCTATGAATAAGTTCCAGCC
AACGGATCAAATTTAA

Coding sequence (CDS) from alignment at sc0000356:221215..223030

>TCONS_00020451 ID=TCONS_00020451|Name=TCONS_00020451|organism=Clytia hemisphaerica|type=CDS|length=1518bp|location=Sequence derived from alignment at sc0000356:221215..223030 (Clytia hemisphaerica)
CTATTTACCGTCCATCAAATTCTCTCTGGCTTCCAAAATCTTGGCACGTC
CTTCTTCTTCCTTATCGTAAGCTTCCGCCAGGAAATAAAAATCGATAAAT
TTGTTCATCAAAACAGACGTCGGTAGGCAAAACAGTAGTAAGCCCAACAA
ACAAAACGCACAACCCAGGATTTTTCCGGGTAGGGTCATCGGGTACATGT
CCCCGTACCCGACTCCCGTACAGGTTATAATGATATACCATACACCGTCA
CCGATACTGTTTATAGAAGCCGGATGTTCATTTACGGGGCCGTTACGGAA
CCCGTTTTCAACCAGGTAAATCAATATGGCAAACCAGAAAAATATAATGG
TAGCCGAAGTAGCGAACAATTGTAAATAGTATCGTGTCTCCGTTAATGTG
TATAAAATATAACGTGCGCTTTCACAGAACTTAAACATCTTGAAAATTCG
AAATGTTAAAAAGAAATTGCAGATTCTGTTGAGCGTATATTGCCATACAc
caaagatgaaaaagaagaagaaaaagtaataagaaacTGAAGTCACGATA
TCCATAAAGCCGACAATACTGAGAAAATATTGTTTAATGTTTGGTGTGAA
TAGCAGCAAGCCTCCAAGTTCAAGAGTGTATATCATGTTGATTGTGAAAT
CTGCAAGAAAAACATGGGTTGGGTTTATCCCAATCGGGAGAGTTTTTGTA
CAAATGATTAATACTGAAATGATTGTGATTATAAGGTGAAATAGAGTCCA
AAGGCGTCCTAAACAACTTTCGTTTTGGTGTCTGAACAACATCCATGCTT
TTTCACGGAATAGCTTAGGTTCCTCAACAATTTTCTCTTTCATAAGTTCT
TTTAAATGGTAAGCGTCCTGCTCTTGTCTGTTATCCATGAATTTGGTTAT
TCTGAAGAACTCTAATTCCTCGATGAAATGCATACGAGTGACGTCACTGG
GTCTTGATAATATGCCGTTTGATTGATAATAGAATAAAATGGCGTCGAAG
GAGCGATGACAATGGTCTTCAAAAACATATGCTTTTCTGACCGGATCATA
AAAAACATCACGATCATTTTTAGTCCCCAGCAATGTTGTCGAGTGACGAT
CTAAAGTCTCTTCAAAAGTTTGGTATAGTTTGCCTTGTACTattatattg
attcgtttctggTCCCCGATTGTGGTCCCAAGAGACAATATTGATGACCG
GACTGATGGTAGGGAGGATAAGGTCGGGACTCTGAGCCGTCGGGGAAATC
GCGGACTGGCATTATCACCAGCTGAGACAATCGAATCACCAAGATAATTC
AAAAGGCTGTAATTTTCATCAGTCTCGTCAAAACTTTTAGATACTAACGT
ACCATGTGGACAACCTTCCTCCAGGATGGAAGTAGTATGAATGGAACCAG
TTTTGGTTCGTTTGATGACACGATGTTGTGAATAACTTTCACCTTTTGAT
GAGGTGCCACGTAAAGAATAATGACGATGTGCCACTTGGGAACTGGAAAT
TGAAGACTTCAGAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011494XLOC_011494Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020451-proteinTCONS_00020451-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020451-exon-sc0000356-1491911889:221215..223030TCONS_00020451-exon-sc0000356-1491911889:221215..223030Clytia hemisphaericaexon
TCONS_00020451-exon-sc0000356-1510915933:221215..223030TCONS_00020451-exon-sc0000356-1510915933:221215..223030Clytia hemisphaericaexon
TCONS_00020451-exon-sc0000356-1575043694:221215..223030TCONS_00020451-exon-sc0000356-1575043694:221215..223030Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000356supercontigsc0000356:221215..223030 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.044154	0.0645857	0	0	0.0595441	0.0235263	0.681203	0.318867	0.148831	0.253483	0.0671009	0.0294063	0.939694	0.930137	0.0376082	0	0.778937	0.849346	2.27643	2.6277	1.70762	2.31135	0.32907	0.460265	1.09034	1.2058	0.0605439	0.0969211	0	0.0748963
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR000210BTB/POZ_dom
IPR005821Ion_trans_dom
IPR003131T1-type_BTB
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
GO:0051260protein homooligomerization
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005515protein binding
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005515 protein binding
molecular_function GO:0005249 voltage-gated potassium channel activity
Blast
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BLAST of TCONS_00020451 vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 7.444e-32
Identity = 118/407 (28.99%), Postives = 198/407 (48.65%), Query Frame = 3 
Query:  648 KRINIIVQGKLYQTFEETLDRHSTTLLGTKNDRDVFYDPVRKAYVFEDHCHRSFDAILFYYQSNGILSRPSDVTRMHFIEELEFFRITKFMDNRQEQDAYHLKELMKEKIVEEPKLFREKAWMLFRHQNESCLGRLWTLFHLXXXXXXXXXXCTKTLP------------------IGINPTHVFLADF----TINMI-YTLELGGLLLFTPNIKQYFLSIVGFMDIVTSVSYY-------XXXXXXXXGVWQYTLN--RICNFFLTFRIFKMFKFCESARYILYTLTETRYYLQLFATSATIIFFWFAILIYLVENGFRNGPVNEHPASINSIGDGVWYIIITCTGVGYGDMYPMTLPGKIXXXXXXXXXXXXXXXPTSVLMNKFIDFYFLAEAYDKEEEGRAKIL 1772
            +R+ I + G  ++T  +TL +   TLLG    R  ++DP+R  Y F D    SFDAIL+YYQS G L RP +V    F EE++F+ + +    +  +D   +KE  +E+ + E K ++ + W+LF +   S   R+  +  +++ +IS++I C +TLP                    I  +++F   F    T+ +I ++ EL       P+   +F +I+ F+DIV  + Y+               G    +L   R+      FRIFK+ +  +  + +  TL  +   L L      +IFF F I + L  +        E  +  +SI D  W+ +++ T VGYGDMYP+T+ GKI+G    + G+L   LP  V+++ F  FY      + E E +A++L
Sbjct:   37 ERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKE--EERPLPE-KEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGL------LIFFLF-IGVILFSSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH----RETEGEEQAQLL 428
The following BLAST results are available for this feature:
BLAST of TCONS_00020451 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA17.444e-3228.99Potassium voltage-gated channel subfamily A member... [more]
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