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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020459 ID=TCONS_00020459|Name=TCONS_00020459|organism=Clytia hemisphaerica|type=transcript|length=918bp
CTTTATCGCAATTTATCTAAACGACATTGTCTCTAACGACGGTAAAATAG
GGACCCTAGACGCAGCGTTGTTAGGCATTAGGTGGGGACACTTGAGTGCT
GGTTTAGAAACACCTACAGATAACCCAATCGTTAAATTAGCTCTCGAAGG
TGGGAAAAGAGTTATCACGAGGGACGGTGGGAAGACATCTATTCAAAAAG
AACCCCTCAACACCGAGCTtctttacaaaattgttaaagaGTACGGAGCG
TCCGATAATTTAATGGATCTTCGGTTCGTGTTAATTTGTGTTCTCGGCTT
CTCAGGCTTCATGAGAATAAGTGAGATTCTAGCTTTGAAGATTAAGGACA
TTACTTTTGTGGAGGAAGGTCTAAAACTTTTCATAGAAATATCAAAGACT
GATCAACTTCGGGAAGGACATATCATATACGTTTCAAAAACAGACACCGA
ATGTTGTCCAGTATATTGGCTTAGACGTTACCTTTCATTATCAAACCTGG
AATccgaaaaataatcttttttagTCTGTCgtttagcaaaaacaaaaatt
gggcATAACGCTATCGGCAAATATAGTATTTCTTATTCTACAGTGTGGGC
CCTTTTTGAAAGCCACTTATCATCTTTAGTCAATGAGAAGCACTACGCTT
TACACTCTCTAAGGTCTGGTGGAGCCTCCGAGGCAGTTAACAATAACGTT
TCAGATCGTATGATATCAAAGCACGGTAGATGGAAGTCCCAGCAAAGTAG
AAACCGCTATATTAAAGACAATCCAGCAAAAAGATTTGCTGTAACAAAAA
GTCTCGGAATTTAAGCAATGTTCAGAACTTTATCGAAGTAAAATCCCAAG
ACGTTTGTTGAGTTGAATTATTTTCCTAAGATATTACATTCGTTTTTCAC
GGCTTCTTTTCAAGCTGC Run BLAST on NCBI protein sequence of TCONS_00020459-protein >TCONS_00020459-protein ID=TCONS_00020459-protein|Name=TCONS_00020459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
FIAIYLNDIVSNDGKIGTLDAALLGIRWGHLSAGLETPTDNPIVKLALEG
GKRVITRDGGKTSIQKEPLNTELLYKIVKEYGASDNLMDLRFVLICVLGF
SGFMRISEILALKIKDITFVEEGLKLFIEISKTDQLREGHIIYVSKTDTE
CCPVYWLRRYLSLSNLESEK Run BLAST on NCBI transcript from alignment at sc0000356:312119..313036 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020459 ID=TCONS_00020459|Name=TCONS_00020459|organism=Clytia hemisphaerica|type=transcript|length=918bp|location=Sequence derived from alignment at sc0000356:312119..313036 (Clytia hemisphaerica)
GCAGCTTGAAAAGAAGCCGTGAAAAACGAATGTAATATCTTAGGAAAATA
ATTCAACTCAACAAACGTCTTGGGATTTTACTTCGATAAAGTTCTGAACA
TTGCTTAAATTCCGAGACTTTTTGTTACAGCAAATCTTTTTGCTGGATTG
TCTTTAATATAGCGGTTTCTACTTTGCTGGGACTTCCATCTACCGTGCTT
TGATATCATACGATCTGAAACGTTATTGTTAACTGCCTCGGAGGCTCCAC
CAGACCTTAGAGAGTGTAAAGCGTAGTGCTTCTCATTGACTAAAGATGAT
AAGTGGCTTTCAAAAAGGGCCCACACTGTAGAATAAGAAATACTATATTT
GCCGATAGCGTTATgcccaatttttgtttttgctaaacGACAGActaaaa
aagattatttttcggATTCCAGGTTTGATAATGAAAGGTAACGTCTAAGC
CAATATACTGGACAACATTCGGTGTCTGTTTTTGAAACGTATATGATATG
TCCTTCCCGAAGTTGATCAGTCTTTGATATTTCTATGAAAAGTTTTAGAC
CTTCCTCCACAAAAGTAATGTCCTTAATCTTCAAAGCTAGAATCTCACTT
ATTCTCATGAAGCCTGAGAAGCCGAGAACACAAATTAACACGAACCGAAG
ATCCATTAAATTATCGGACGCTCCGTACtctttaacaattttgtaaagaA
GCTCGGTGTTGAGGGGTTCTTTTTGAATAGATGTCTTCCCACCGTCCCTC
GTGATAACTCTTTTCCCACCTTCGAGAGCTAATTTAACGATTGGGTTATC
TGTAGGTGTTTCTAAACCAGCACTCAAGTGTCCCCACCTAATGCCTAACA
ACGCTGCGTCTAGGGTCCCTATTTTACCGTCGTTAGAGACAATGTCGTTT
AGATAAATTGCGATAAAG Coding sequence (CDS) from alignment at sc0000356:312119..313036 >TCONS_00020459 ID=TCONS_00020459|Name=TCONS_00020459|organism=Clytia hemisphaerica|type=CDS|length=513bp|location=Sequence derived from alignment at sc0000356:312119..313036 (Clytia hemisphaerica)
ttatttttcggATTCCAGGTTTGATAATGAAAGGTAACGTCTAAGCCAAT
ATACTGGACAACATTCGGTGTCTGTTTTTGAAACGTATATGATATGTCCT
TCCCGAAGTTGATCAGTCTTTGATATTTCTATGAAAAGTTTTAGACCTTC
CTCCACAAAAGTAATGTCCTTAATCTTCAAAGCTAGAATCTCACTTATTC
TCATGAAGCCTGAGAAGCCGAGAACACAAATTAACACGAACCGAAGATCC
ATTAAATTATCGGACGCTCCGTACtctttaacaattttgtaaagaAGCTC
GGTGTTGAGGGGTTCTTTTTGAATAGATGTCTTCCCACCGTCCCTCGTGA
TAACTCTTTTCCCACCTTCGAGAGCTAATTTAACGATTGGGTTATCTGTA
GGTGTTTCTAAACCAGCACTCAAGTGTCCCCACCTAATGCCTAACAACGC
TGCGTCTAGGGTCCCTATTTTACCGTCGTTAGAGACAATGTCGTTTAGAT
AAATTGCGATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020459-exon-sc0000356-1491911889:312119..313036 | TCONS_00020459-exon-sc0000356-1491911889:312119..313036 | Clytia hemisphaerica | exon |
| TCONS_00020459-exon-sc0000356-1510915933:312119..313036 | TCONS_00020459-exon-sc0000356-1510915933:312119..313036 | Clytia hemisphaerica | exon |
| TCONS_00020459-exon-sc0000356-1575043694:312119..313036 | TCONS_00020459-exon-sc0000356-1575043694:312119..313036 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000356 | supercontig | sc0000356:312119..313036 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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