TCONS_00020465 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020465
Unique NameTCONS_00020465
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1460

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020465 ID=TCONS_00020465|Name=TCONS_00020465|organism=Clytia hemisphaerica|type=transcript|length=1460bp
CGGTACGCTAAAAACTTatataaatattattttttgttttcagataAATA
CTGAAAACTTGATGCTGAAGTTCATCAACACATTGACTGGTCATTATGGT
CTCACTGAAGGTTGCAGTTTTAGCATTGTGCTATTTGGCTTTATCTTCAG
CTAAAAGCATCAATCTTGAAAAGGCAGAAGATGGTTACTTATTTGAAGGT
GACATGGTGATGTCCAAACAAGACATCGAGCAAAGTTTAGCAGGTGGTCC
ATCCAAAGAAAGCGAGAATTTGTTTGGGTTATCGAAGAGTCAATACAAAA
GATGGCCAAATGGTGTTGTCCCCTATACTCTGGATTCCTCCATCAGCAAC
ACATTATGGAGAAAAAGTTCAGTTCGTAAAGCCATGAAACAGTGGGAAGA
AAAGACATGCGTTCGATTTGTTGAAAGAACTGACCAAAAAGACTACGTTG
AATTCTTCGCTGATTTTGGAAAATGTTATTCATACGTTGGACGAACAGGT
GGTAAGCAGAGAATCTCTCTTGGTTTCGGATGCTTTGGTGTTGGAACTGC
TATCCATGAAATTGGACACATGTTAGGAATGTGGCATGAACAATCAAGAC
CAGATCGTGATGATTACGTCGAAATCATTTGGGATAATATCACTGAAGAT
AATAAACACAACTTCAAGAAATATTCTACTTACACCATCGATTCACGTGG
TTCACCATACGATTATGATTCCATTATGCATTATGAATGGAACGCCTTCT
CAAAATTCCCTGGATTAAGGACAACCATTCGATCGAAAAATGGCGCCAAA
TTTGGACAAAGAAGTCATATCAGTGTTCAAGACGCCATTCAAATAAATCG
ATATTATGAATGTGATAAGAAACAATAGATTCGTGAGCTTTTCGAACATA
ACACTCTTGGGTTAAATTTTGTATGGTTATACTCTGCTTGAGAAAGAAAA
TCCTTTTATAAGTTCAGAAGGTCTTtagttttcattttagtttcaGTGAC
AGGCTTCAATACATTCAATCCAAGCTGTTAAATTGACGTTGCTTTGACAT
TTTGTGGCGGTTAGGATGAACAATCAACTCTCaactctccctaattcgaa
cctctattattcgagtctctctgtaattcgaactaaaacattggtccTAT
CAGCTGGGGAGTGGTATAAATTACtatctctaattcgaaaaaaacTTTGG
TACCtttaagttcgaattagagagagtcaactgttcATTTTTCGTTCACC
TCCGGAAATTATCAAAACTCAAGTTAGGCTAGCGGAGTAAAACATCAAGT
GCATGCGTATGACATAGAGATGAATAAATGAGGGGATATTTTTCCATTCA
AGTTGTTTGTTCTTCCGATTTCCTGACTTAGCGAGCTTGCTGCTTTTCCT
TATGGTGCAACAAATACTATAAATAACTATCGATcgtattgataaacatc
ttaaGAGGgt
Run BLAST on NCBI

protein sequence of TCONS_00020465-protein

>TCONS_00020465-protein ID=TCONS_00020465-protein|Name=TCONS_00020465-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MVSLKVAVLALCYLALSSAKSINLEKAEDGYLFEGDMVMSKQDIEQSLAG
GPSKESENLFGLSKSQYKRWPNGVVPYTLDSSISNTLWRKSSVRKAMKQW
EEKTCVRFVERTDQKDYVEFFADFGKCYSYVGRTGGKQRISLGFGCFGVG
TAIHEIGHMLGMWHEQSRPDRDDYVEIIWDNITEDNKHNFKKYSTYTIDS
RGSPYDYDSIMHYEWNAFSKFPGLRTTIRSKNGAKFGQRSHISVQDAIQI
NRYYECDKKQ
Run BLAST on NCBI

transcript from alignment at sc0000357:24290..30869+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020465 ID=TCONS_00020465|Name=TCONS_00020465|organism=Clytia hemisphaerica|type=transcript|length=6580bp|location=Sequence derived from alignment at sc0000357:24290..30869+ (Clytia hemisphaerica)
CGGTACGCTAAAAACTTatataaatattattttttgttttcagataAATA
CTGAAAACTTGATGCTGAAGTTCATCAACACATTGACTGGTCATTATGGT
CTCACTGAAGGTTGCAGTTTTAGCATTGTGCTATTTGGCTTTATCTTCAG
CTAAAAGCATCAATCTTGAAAGTAAGTTTTTTCTCGAAGAAATTCGAGAG
AACTTTTTCCATATTCCAAGTATATATCAATGTAGGTGGTCAATAAAAAA
GGACcatcaaatttttgtattaaatCTCTTGATTTCCTCAATCAGGGCAT
ACTTGATTTTAGTTGCCTCCTCCCGGACCTGTGCTCCGTGTAGTTGGAAG
CTTCCGAAGGTACAAGATACCGAAataccttcatttttttcatgGCGAAC
TGGCCAGAAATTTCTCTACTATCGGAAGTTTGGCATTTCAATACTAGAAT
ACCAGTCGCTAGTTGCCTCTTACGAACTCGTGCTCATTGTAGATAGCCTT
ATTTCCTATGAATTTCTGGAAGTCTGCTATTCAAAACTATCATCGACAAT
TAATTTTGTTTTCAGAGGCAGAAGATGGTTACTTATTTGAAGGTGACATG
GTGATGTCCAAACAAGACATCGAGCAAAGTTTAGCAGGTGGTCCATCCAA
AGAAAGCGAGAATTTGTTTGGGTTATCGAAGAGTCAATACAAAAGATGGC
CAAATGGTGTTGTCCCCTATACTCTGGATTCCTCCATCAGTAAGTATATT
TATACAGGGGGTCAAGCACAAGACACTATGCCGGTTTGTACCGTGGTGGT
GGGTCATGTGAATTGGATGAAATCACTTAGTAGTACTCAGGTGTAACCGC
AAAAAAGGTTGGTCCCTTGCTAACCAATTTTGGTACTAACTGcgtgaaaa
atgaaattctgagaggacattttcaaaaaacatcgtattttacaaaaaaa
aatttctaggtaggaagttgaatttttttcaaaattttcaaaatgccttt
ttttttaatcttaaaaaCGATTTGTAGGTTGTCATAGAAATTTGATTCTA
AAATgaattctaaaatatttcaaatgttgtaatttcctattgaaaaatgg
aaaattggaaCATTTAAGATATTAGATTTTGTTTTATccgattttattgc
tttttggacctacccctgtggaggtcctataaattacctctgttcgtccg
tccgttcgttcgtccgttcgttagctaccaacttttctcgagattggctc
attagttttttctgattttttgcacaaagatgtgtagttataaaccctcg
aatatGACGGAgaccgattttcgaaaaaaaaatttgggggcaaatttggg
ccaaaaaacggctaaaaaacgggttttttgggttctaggaaaattgcccc
cgagaaaattgccccccggaaaactgcccccggaaaactgccccccggaa
aattgccccctaggaaaactgCCCCCTAGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNggggggcaattttctggggggcaa
ttttcctagggggcaattttccggggggccgtTTTCCGgtgggcaatttt
ccggggggcaattttctggggggcaattttcctagggggcaattttccgg
ggggccgtTTTCCGgtgggcaattttccggggggcagttttccggggggc
agttttctcgggggcaattttcctgacaccgttttttggactttgtgaaa
tatagGATCATtgtttctttctgattttttgcatggaagtaggtaaaaga
tggctcaagcagatttttgttaaaaaagaatttttcagctcaaaaaacgc
atttttatctataagaatcactattaataagcatacatcaatgttcttag
ccaaattactcaatttttttatgagatagatgttttttttgctcacgaag
tcttgaatatgaaagaatatttcaagagcatgaaattttaatagatcgta
actatttgtgttctaaatgattgtttaatggtcacgttcatgtagatatc
aattatatatgtgttaaatgcataaccaggtaggtccataaaagtatcac
ttgtatGATGGTCAAAAAGCCGTTTTGAAGAATGATGTAAATTTGACCCA
AAattcagttagtactaactgtacTGAGTGTACAAAtgcatggtttcagc
ccacttttcaggtgcccccattgagcatggtgcccccagcaatttagccc
cttgagaaattgctttgagttaggtacccccattcagccaaaaaaatttt
tttgaattgacactttttgttcttttgtcattcctaaaatctTAATGATA
GCGTGGAAAGCGCTCACGCATGAACGCCTGCTAATAagctttgttgttat
gctataaagatggcggctgtaaatcagaacaaccacattagaaaaatata
gcaaaagatggcgtgatgggaaacgaaagagaaattggatgggaaactag
gtgctggggtaaaaaaattcaataattttaaatattttgaaatattcgat
ttggaaaatataaccagcccccagagcctccatcaagacagctagatacc
cttaatgaataggtaaccccaaagaattgcaaggcattagccccctctac
taacctggcctaggtgcccttcagatttctggggggggcTGACACCATGA
AATGGTGGTGGTGTTACTAACTTCTTGCGAAAAAGCAGTTAGTAGGCATA
GTCTAATttatacccagctggcacacaacgtttatctaacgttatatgga
cgtttaGACCGCGTTGTGTGCTACCATGGTTTTATATCTTTTGATTAATA
ATTATTAAAGGAAAATTTGTCTATTTGGAGCTTTAAGCGAATGACCCTAG
GTATCCACAAATCTCTTCTATGTATTGACTAGTCTCTGCCTGCCAAGCCT
TTTTTATACTTCCCTTACCGCACTTcttattaattttttctctcttcaCT
CAGGCAACACATTATGGAGAAAAAGTTCAGTTCGTAAAGCCATGAAACAG
TGGGAAGAAAAGACATGCGTTCGATTTGTTGAAAGAACTGACCAAAAAGA
CTACGTTGAATTCTTCGCTGATTTTGGAAAGTAAGCACGAATTTTTGTCT
TAACAGTACATACTTTCTTGCAAATAAAAACTACGCTGACTTTTTTAgca
aagttattttataaatctaaaacaGCACTCCCGAACATTGACATTTGTTG
GTAGATTGgtccattccattttatatccatgcaGGGGGGGGGTGGACAAA
CACTTCTATGGAGTAAtcggagaaaaatttccaggaggtgttttttcatt
tttccaagggggtaaaaaatttCTAGGGGgtgaaagactgattttagttc
atcaACACTCACCTTAATGTATGAGCAGAATTTTCCAAgagtatttttgc
aaattttgctttTCTCCAGGGGGTAttgacacattttcaataattttttt
tgacttgaaaaggttcgtccaccccctgtatggttttttaatggaacagc
ccattatcttagtcttctttattttttgcggtttgtttgattgacgtttt
tcatttttaataaaaCCCTAGTCTAgagattaaaggttttatttttacct
gtgtttccgtttcatatcggATACATGTTTCATATCAATTATCagggaca
gtgtctgcctattgttatattatgctgatataaacaaaaaatgtttttct
ttccctctttctgatcaatcttgccCCACATccttgtcaatccaatgtga
aaaagcttgtaaattaaaattgatgagtaagggaaacgatatcactctta
tttcgaaacaaaacctttaaatcaaaCCAGAAGTATATGTGAATCTCCTT
CGGTTCAAGCAACTGAATCAAAATTCCATTTGATTCTTTTCTTCTACTCC
AGATGTTATTCATACGTTGGACGAACAGGTGGTAAGCAGAGAATCTCTCT
TGGTTTCGGATGCTTTGGTGTTGGAACTGCTATCCATGAAATTGGTAAGA
AAAATTCACCACAGAtatcttttaaggtgtttttaaAGCATCAGGTTCAG
CTTCTACATGTTTTGAATTTGCTTTCATAAGCCCTGTATTGTCATTCTAC
TCTCGCTTGAGTCTGGAATGTACCGAGAAACTTATCTTTTAAGGAGAATA
ATTATCTCGCGGAAATTACTTTCGCAAATTTCCCTAAAATATAATTATTT
CATCTACTAAATCTAACTACCATTAGCTCCGTAATTTTAAGGATATGTGT
CACTTTTATTATCTCCTTTATTTTCAGGACACATGTTAGGAATGTGGCAT
GAACAATCAAGACCAGATCGTGATGATTACGTCGAAATCATTTGGGATAA
TATCACTGAAGGTATCAACGACTTTTTCTTCCCTTCCTTCCTTATTTCCA
TTCTTAACTACCCGTTTGCCTCGAATTCGAAGTAATACGACATTATTATG
GCGTTCTATAGCCTGGTATACGTTTGCTATCTCACTTTGAAATAGTACTT
GATTCCTCTCTGAGACAGCCTAGAAAAAAGGATCTTTTGGGTTCCccttt
gtctgtacacagactcagtatctacggctaatttcaaaattcattaacGT
AGAGGGTCCGTTGTAATTGTCTTTTCTCTATTGAGGTTTTTCAAACTGAC
TGCTGTGATAGAGTGTTGACGAAGAGGGTAAACGATGaggtgttgctatt
tataaatcatacttcatcgcagaggtttcCGCATGGGAAATTTTTTATTA
AACAGATAGtgtgcacagagtgtactacgaagcgataaacgctAGATata
ctctggtacagagtaggtCCCCCTAGACCGGTTGCAAATTTGcttatttt
actttatttttgttaCAGATAATAAACACAACTTCAAGAAATATTCTACT
TACACCATCGATTCACGTGGTTCACCATACGATTATGATTCCATTATGCA
TTATGAATGGAACGCCTTCTCAAAATTCCCTGGATTAAGGACAACCATTC
GATCGAAAAATGGCGCCAAATTTGGACAAAGAAGTCATATCAGTGTTCAA
GACGCCATTCAAATAAATCGATATTATGAATGTGATAAGAAACAATAGAT
TCGTGAGCTTTTCGAACATAACACTCTTGGGTTAAATTTTGTATGGTTAT
ACTCTGCTTGAGAAAGAAAATCCTTTTATAAGTTCAGAAGGTCTTtagtt
ttcattttagtttcaGTGACAGGCTTCAATACATTCAATCCAAGCTGTTA
AATTGACGTTGCTTTGACATTTTGTGGCGGTTAGGATGAACAATCAACTC
TCaactctccctaattcgaacctctattattcgagtctctctgtaattcg
aactaaaacattggtccTATCAGCTGGGGAGTGGTATAAATTACtatctc
taattcgaaaaaaacTTTGGTACCtttaagttcgaattagagagagtcaa
ctgttcATTTTTCGTTCACCTCCGGAAATTATCAAAACTCAAGTTAGGCT
AGCGGAGTAAAACATCAAGTGCATGCGTATGACATAGAGATGAATAAATG
AGGGGATATTTTTCCATTCAAGTTGTTTGTTCTTCCGATTTCCTGACTTA
GCGAGCTTGCTGCTTTTCCTTATGGTGCAACAAATACTATAAATAACTAT
CGATcgtattgataaacatcttaaGAGGgt

Coding sequence (CDS) from alignment at sc0000357:24290..30869+

>TCONS_00020465 ID=TCONS_00020465|Name=TCONS_00020465|organism=Clytia hemisphaerica|type=CDS|length=4698bp|location=Sequence derived from alignment at sc0000357:24290..30869+ (Clytia hemisphaerica)
ATGGTCTCACTGAAGGTTGCAGTTTTAGCATTGTGCTATTTGGCTTTATC
TTCAGCTAAAAGCATCAATCTTGAAAAGGCAGAAGATGGTTACTTATTTG
AAGGTGACATGGTGATGTCCAAACAAGACATCGAGCAAAGTTTAGCAGGT
GGTCCATCCAAAGAAAGCGAGAATTTGTTTGGGTTATCGAAGAGTCAATA
CAAAAGATGGCCAAATGGTGTTGTCCCCTATACTCTGGATTCCTCCATCA
GCAACACATTATGGAGAAAAAGTTCAGTTCGTAAAGCCATGAAACAGTGG
GAAGAAAAGACATGCGTTCGATTTGTTGAAAGAACTGACCAAAAAGACTA
CGTTGAATTCTTCGCTGATTTTGGAAAATGTTATTCATACGTTGGACGAA
CAGGTGGTAAGCAGAGAATCTCTCTTGGTTTCGGATGCTTTGGTGTTGGA
ACTGCTATCCATGAAATTGGACACATGTTAGGAATGTGGCATGAACAATC
AAGACCAGATCGTGATGATTACGTCGAAATCATTTGGGATAATATCACTG
AAGATAATAAACACAACTTCAAGAAATATTCTACTTACACCATCGATTCA
CGTGGTTCACCATACGATTATGATTCCATTATGCATTATGAATGGAACGC
CTTCTCAAAATTCCCTGGATTAAGGACAACCATTCGATCGAAAAATGGCG
CCAAATTTGGACAAAGAAGTCATATCAGTGTTCAAGACGCCATTCAAATA
AATCGATATTATGAATGTGATAAGAAACAATAGATGGTCTCACTGAAGGT
TGCAGTTTTAGCATTGTGCTATTTGGCTTTATCTTCAGCTAAAAGCATCA
ATCTTGAAAAGGCAGAAGATGGTTACTTATTTGAAGGTGACATGGTGATG
TCCAAACAAGACATCGAGCAAAGTTTAGCAGGTGGTCCATCCAAAGAAAG
CGAGAATTTGTTTGGGTTATCGAAGAGTCAATACAAAAGATGGCCAAATG
GTGTTGTCCCCTATACTCTGGATTCCTCCATCAGCAACACATTATGGAGA
AAAAGTTCAGTTCGTAAAGCCATGAAACAGTGGGAAGAAAAGACATGCGT
TCGATTTGTTGAAAGAACTGACCAAAAAGACTACGTTGAATTCTTCGCTG
ATTTTGGAAAATGTTATTCATACGTTGGACGAACAGGTGGTAAGCAGAGA
ATCTCTCTTGGTTTCGGATGCTTTGGTGTTGGAACTGCTATCCATGAAAT
TGGACACATGTTAGGAATGTGGCATGAACAATCAAGACCAGATCGTGATG
ATTACGTCGAAATCATTTGGGATAATATCACTGAAGATAATAAACACAAC
TTCAAGAAATATTCTACTTACACCATCGATTCACGTGGTTCACCATACGA
TTATGATTCCATTATGCATTATGAATGGAACGCCTTCTCAAAATTCCCTG
GATTAAGGACAACCATTCGATCGAAAAATGGCGCCAAATTTGGACAAAGA
AGTCATATCAGTGTTCAAGACGCCATTCAAATAAATCGATATTATGAATG
TGATAAGAAACAATAGATGGTCTCACTGAAGGTTGCAGTTTTAGCATTGT
GCTATTTGGCTTTATCTTCAGCTAAAAGCATCAATCTTGAAAAGGCAGAA
GATGGTTACTTATTTGAAGGTGACATGGTGATGTCCAAACAAGACATCGA
GCAAAGTTTAGCAGGTGGTCCATCCAAAGAAAGCGAGAATTTGTTTGGGT
TATCGAAGAGTCAATACAAAAGATGGCCAAATGGTGTTGTCCCCTATACT
CTGGATTCCTCCATCAGCAACACATTATGGAGAAAAAGTTCAGTTCGTAA
AGCCATGAAACAGTGGGAAGAAAAGACATGCGTTCGATTTGTTGAAAGAA
CTGACCAAAAAGACTACGTTGAATTCTTCGCTGATTTTGGAAAATGTTAT
TCATACGTTGGACGAACAGGTGGTAAGCAGAGAATCTCTCTTGGTTTCGG
ATGCTTTGGTGTTGGAACTGCTATCCATGAAATTGGACACATGTTAGGAA
TGTGGCATGAACAATCAAGACCAGATCGTGATGATTACGTCGAAATCATT
TGGGATAATATCACTGAAGATAATAAACACAACTTCAAGAAATATTCTAC
TTACACCATCGATTCACGTGGTTCACCATACGATTATGATTCCATTATGC
ATTATGAATGGAACGCCTTCTCAAAATTCCCTGGATTAAGGACAACCATT
CGATCGAAAAATGGCGCCAAATTTGGACAAAGAAGTCATATCAGTGTTCA
AGACGCCATTCAAATAAATCGATATTATGAATGTGATAAGAAACAATAGA
TGGTCTCACTGAAGGTTGCAGTTTTAGCATTGTGCTATTTGGCTTTATCT
TCAGCTAAAAGCATCAATCTTGAAAAGGCAGAAGATGGTTACTTATTTGA
AGGTGACATGGTGATGTCCAAACAAGACATCGAGCAAAGTTTAGCAGGTG
GTCCATCCAAAGAAAGCGAGAATTTGTTTGGGTTATCGAAGAGTCAATAC
AAAAGATGGCCAAATGGTGTTGTCCCCTATACTCTGGATTCCTCCATCAG
CAACACATTATGGAGAAAAAGTTCAGTTCGTAAAGCCATGAAACAGTGGG
AAGAAAAGACATGCGTTCGATTTGTTGAAAGAACTGACCAAAAAGACTAC
GTTGAATTCTTCGCTGATTTTGGAAAATGTTATTCATACGTTGGACGAAC
AGGTGGTAAGCAGAGAATCTCTCTTGGTTTCGGATGCTTTGGTGTTGGAA
CTGCTATCCATGAAATTGGACACATGTTAGGAATGTGGCATGAACAATCA
AGACCAGATCGTGATGATTACGTCGAAATCATTTGGGATAATATCACTGA
AGATAATAAACACAACTTCAAGAAATATTCTACTTACACCATCGATTCAC
GTGGTTCACCATACGATTATGATTCCATTATGCATTATGAATGGAACGCC
TTCTCAAAATTCCCTGGATTAAGGACAACCATTCGATCGAAAAATGGCGC
CAAATTTGGACAAAGAAGTCATATCAGTGTTCAAGACGCCATTCAAATAA
ATCGATATTATGAATGTGATAAGAAACAATAGATGGTCTCACTGAAGGTT
GCAGTTTTAGCATTGTGCTATTTGGCTTTATCTTCAGCTAAAAGCATCAA
TCTTGAAAAGGCAGAAGATGGTTACTTATTTGAAGGTGACATGGTGATGT
CCAAACAAGACATCGAGCAAAGTTTAGCAGGTGGTCCATCCAAAGAAAGC
GAGAATTTGTTTGGGTTATCGAAGAGTCAATACAAAAGATGGCCAAATGG
TGTTGTCCCCTATACTCTGGATTCCTCCATCAGCAACACATTATGGAGAA
AAAGTTCAGTTCGTAAAGCCATGAAACAGTGGGAAGAAAAGACATGCGTT
CGATTTGTTGAAAGAACTGACCAAAAAGACTACGTTGAATTCTTCGCTGA
TTTTGGAAAATGTTATTCATACGTTGGACGAACAGGTGGTAAGCAGAGAA
TCTCTCTTGGTTTCGGATGCTTTGGTGTTGGAACTGCTATCCATGAAATT
GGACACATGTTAGGAATGTGGCATGAACAATCAAGACCAGATCGTGATGA
TTACGTCGAAATCATTTGGGATAATATCACTGAAGATAATAAACACAACT
TCAAGAAATATTCTACTTACACCATCGATTCACGTGGTTCACCATACGAT
TATGATTCCATTATGCATTATGAATGGAACGCCTTCTCAAAATTCCCTGG
ATTAAGGACAACCATTCGATCGAAAAATGGCGCCAAATTTGGACAAAGAA
GTCATATCAGTGTTCAAGACGCCATTCAAATAAATCGATATTATGAATGT
GATAAGAAACAATAGATGGTCTCACTGAAGGTTGCAGTTTTAGCATTGTG
CTATTTGGCTTTATCTTCAGCTAAAAGCATCAATCTTGAAAAGGCAGAAG
ATGGTTACTTATTTGAAGGTGACATGGTGATGTCCAAACAAGACATCGAG
CAAAGTTTAGCAGGTGGTCCATCCAAAGAAAGCGAGAATTTGTTTGGGTT
ATCGAAGAGTCAATACAAAAGATGGCCAAATGGTGTTGTCCCCTATACTC
TGGATTCCTCCATCAGCAACACATTATGGAGAAAAAGTTCAGTTCGTAAA
GCCATGAAACAGTGGGAAGAAAAGACATGCGTTCGATTTGTTGAAAGAAC
TGACCAAAAAGACTACGTTGAATTCTTCGCTGATTTTGGAAAATGTTATT
CATACGTTGGACGAACAGGTGGTAAGCAGAGAATCTCTCTTGGTTTCGGA
TGCTTTGGTGTTGGAACTGCTATCCATGAAATTGGACACATGTTAGGAAT
GTGGCATGAACAATCAAGACCAGATCGTGATGATTACGTCGAAATCATTT
GGGATAATATCACTGAAGATAATAAACACAACTTCAAGAAATATTCTACT
TACACCATCGATTCACGTGGTTCACCATACGATTATGATTCCATTATGCA
TTATGAATGGAACGCCTTCTCAAAATTCCCTGGATTAAGGACAACCATTC
GATCGAAAAATGGCGCCAAATTTGGACAAAGAAGTCATATCAGTGTTCAA
GACGCCATTCAAATAAATCGATATTATGAATGTGATAAGAAACAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011505XLOC_011505Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020465-proteinTCONS_00020465-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020465-exon-sc0000357-1491911889:24290..24460TCONS_00020465-exon-sc0000357-1491911889:24290..24460Clytia hemisphaericaexon
TCONS_00020465-exon-sc0000357-1510915933:24290..24460TCONS_00020465-exon-sc0000357-1510915933:24290..24460Clytia hemisphaericaexon
TCONS_00020465-exon-sc0000357-1575043694:24290..24460TCONS_00020465-exon-sc0000357-1575043694:24290..24460Clytia hemisphaericaexon
TCONS_00020465-exon-sc0000357-1491911889:24855..25028TCONS_00020465-exon-sc0000357-1491911889:24855..25028Clytia hemisphaericaexon
TCONS_00020465-exon-sc0000357-1510915933:24855..25028TCONS_00020465-exon-sc0000357-1510915933:24855..25028Clytia hemisphaericaexon
TCONS_00020465-exon-sc0000357-1575043694:24855..25028TCONS_00020465-exon-sc0000357-1575043694:24855..25028Clytia hemisphaericaexon
TCONS_00020465-exon-sc0000357-1491911889:28143..28269TCONS_00020465-exon-sc0000357-1491911889:28143..28269Clytia hemisphaericaexon
TCONS_00020465-exon-sc0000357-1510915933:28143..28269TCONS_00020465-exon-sc0000357-1510915933:28143..28269Clytia hemisphaericaexon
TCONS_00020465-exon-sc0000357-1575043694:28143..28269TCONS_00020465-exon-sc0000357-1575043694:28143..28269Clytia hemisphaericaexon
TCONS_00020465-exon-sc0000357-1491911889:29092..29183TCONS_00020465-exon-sc0000357-1491911889:29092..29183Clytia hemisphaericaexon
TCONS_00020465-exon-sc0000357-1510915933:29092..29183TCONS_00020465-exon-sc0000357-1510915933:29092..29183Clytia hemisphaericaexon
TCONS_00020465-exon-sc0000357-1575043694:29092..29183TCONS_00020465-exon-sc0000357-1575043694:29092..29183Clytia hemisphaericaexon
TCONS_00020465-exon-sc0000357-1491911889:29467..29550TCONS_00020465-exon-sc0000357-1491911889:29467..29550Clytia hemisphaericaexon
TCONS_00020465-exon-sc0000357-1510915933:29467..29550TCONS_00020465-exon-sc0000357-1510915933:29467..29550Clytia hemisphaericaexon
TCONS_00020465-exon-sc0000357-1575043694:29467..29550TCONS_00020465-exon-sc0000357-1575043694:29467..29550Clytia hemisphaericaexon
TCONS_00020465-exon-sc0000357-1491911889:30058..30869TCONS_00020465-exon-sc0000357-1491911889:30058..30869Clytia hemisphaericaexon
TCONS_00020465-exon-sc0000357-1510915933:30058..30869TCONS_00020465-exon-sc0000357-1510915933:30058..30869Clytia hemisphaericaexon
TCONS_00020465-exon-sc0000357-1575043694:30058..30869TCONS_00020465-exon-sc0000357-1575043694:30058..30869Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000357supercontigsc0000357:24290..30869 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.113438	0.05531	0.0321101	0.0942441	0.420688	0.48354	0.291685	0.307206	0.215082	0.266414	0.172392	0.0944364	49.3216	48.1261	12.9311	25.8358	1.04318	0.567344	188.206	218.144	13.1614	9.79	65.0654	89.8986	52.6452	53.2619	0.0388865	0.166003	0.125907	0.0962098
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR006026Peptidase_Metallo
IPR024079MetalloPept_cat_dom
IPR034035Astacin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00020465 vs. Swiss-Prot (Human)
Match: TLL1 (Tolloid-like protein 1 OS=Homo sapiens GN=TLL1 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.481e-41
Identity = 80/192 (41.67%), Postives = 118/192 (61.46%), Query Frame = 3 
Query:  303 WPNGVVPYTLDSSISNTLWRKSSVRKAMKQWEEKTCVRFVERTDQKDYVEFFADFGKCYSYVGRTG-GKQRISLGFGCFGVGTAIHEIGHMLGMWHEQSRPDRDDYVEIIWDNITEDNKHNFKKYSTYTIDSRGSPYDYDSIMHYEWNAFSKFPGLRTTIRSK--NGAK--FGQRSHISVQDAIQINRYYEC 863
            WP GV+PY +  + + +  +++  ++AM+ WE+ TCV F+ER+D++ Y+ F      C SYVGR G G Q IS+G  C   G  +HE+GH++G WHE +RPDRD++V II +NI    ++NF K     ++S G  YD+DSIMHY  N FS+   L T + S+  NG +   GQR+ +S  D  Q  + Y C
Sbjct:  157 WPGGVIPYVIGGNFTGS--QRAMFKQAMRHWEKHTCVTFIERSDEESYIVFTYRPCGCCSYVGRRGNGPQAISIGKNCDKFGIVVHELGHVIGFWHEHTRPDRDNHVTIIRENIQPGQEYNFLKMEPGEVNSLGERYDFDSIMHYARNTFSRGMFLDTILPSRDDNGIRPAIGQRTRLSKGDIAQARKLYRC 346
The following BLAST results are available for this feature:
BLAST of TCONS_00020465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TLL11.481e-4141.67Tolloid-like protein 1 OS=Homo sapiens GN=TLL1 PE=... [more]
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