TCONS_00020500 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00020500
Unique Name	TCONS_00020500
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1864

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000357:194143..201481+

transcript sequence

>TCONS_00020500 ID=TCONS_00020500|Name=TCONS_00020500|organism=Clytia hemisphaerica|type=transcript|length=1864bp
CTGAACAGAAGTATAAGGTGGCTTTGGAAGTGTTATCATATCACAGTATG
TGCACAGAGTATGAAGTAGATACTGTCAAAAACCATGACCTGGTCAACAC
TAAGGAACAAGTCGGAGCGTTCGAGTTGAATATATTGGATTTAGAAACTA
TAGAAATGTCAAGAATCGCTATTGATCTTTTCACCGAACTGTTCCAAACT
GATAGTCGTTTTGATCCCGAAGAATTAACACGTTTCACGTTAACGGTACG
GCGGAATTACCGACGAGTTCCGTATCATAATTGGTCACATGCTTTTACGG
TGGCCCATTGTATGTATTGTGTGGTGGCGAACTCTAAAGGTCTACTCACC
GGACTTGAGGCTGTAGCGTTGTACGTGTCCTGTTTATGTCATGACTTGGA
TCACCGTGGTAAGAACAATGAATGGATGAAGACAGAGAGTACGCCTCTAG
CAGCCGTGTATACAACCTCTACACTAGAGCATCACCATTTTAATCAAACC
ATCACTATCTTACAGCACGAAGGGCACAACATCTTCTCACACTTGAATTC
GTCAGAATATAAACAGATCTTGGGAATTATCAAAGAATGTATCCTAGCAA
CCGACCTTGCTCAATTCTTCGGAAACAAAGCTAAACTAAATGATATCGTT
AATAAAGGGAAATTTAGTTGGGAAAATTCTGAACATAGgaGGATGTTCCG
TGCACTGTCAATGACAGCTTGTGATTTATCAGCCTGTGCAAAACCATGGA
AAATACAATATGAAACAGTCAAAGTTATTTTCCAAGAATTCTATGCTCAG
GGAGACGAAGAGAAAGCATTAGGGCGAACACCTGTTCCAATGATGGATCG
AGATACTGCTGATAAACTCCCAAATCACCAGGTTGGATTCTTGGTGGGAA
TTTGTATCCCTGGTTATGAATTACTTTGCAAGCTTGTCCCTGGTACCAAG
CCACTTTTAGACGGAGCTAAgaaaaattttGCTGTGTGGAGTGAAATGGT
AAAGAAGCAAAAcgaagaaaaagagaaagaaaaagaaagagaaaagatGA
AACAACTTGAAGAAGCAAAGAAGGAGAATAGAGACGAATAAAAGATTAGT
TGAGGTACAAGGTTTATCTTCCTGGATATCGTAGTGTtagaaaaagcttt
tttcttctgaCTTTTGGTGAACATTTTCTACTAATGAGGATcaagtttgt
tttttcttggttGGATGGCAAGATTGGCGATATATTGGCGACAATCAAAT
TGTAACCAGTCTTGGTTGAATAATGCAACTTATGGGAGCATGGCATCGTT
TCAAATTTACTCTACGCTTAGCTTATGAGTGGCTGCCTTTTATTGCAAAG
TACCAGAACTACTATTTTCGCgactttttcttgaaaaacgGCAACCTTCA
TCAGTGTACCATAATTTTCATCACccctttttgtttttgatacatAAAGT
ATTGGGTTTGCAAGGTGAGGTGACAGGTATATATATCCGATTCTGAAATC
ATTTCAGGCAATTTTCACCAAACTTTTGGTAAAACCTAATCTAATAGAAA
ACAATTTTGATGACCTTGATAATGATGTATTCAGAGAGAATTTATCGTTT
TTGAGAGATTTCGAGGTGTGAAACCTTTGTGTTCGCACGTGGTCGATGCC
CATTTTCCCTGCGCCTCCAAGAATCTccctgaaattaacatacagggtgg
gcaaaaaaaaagtggtcaaaaaattgtttcTGCTTGCAGAGCAATTAGTG
CCATAGAAATTCTAAAACTTTGATAAATtctctttatattttttgatatg
tTCCTGGAGACAATCTATCAACTTTCTGACAATACATTCCTCAACAATAT
TTCtttgttgataa

Run BLAST on NCBI

transcript from alignment at sc0000357:194143..201481+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00020500 ID=TCONS_00020500|Name=TCONS_00020500|organism=Clytia hemisphaerica|type=transcript|length=7339bp|location=Sequence derived from alignment at sc0000357:194143..201481+ (Clytia hemisphaerica)
CTGAACAGAAGTATAAGGTAATTCTTTATCCATTTTTCACACCAATTCGA
TCttgcaataattttttttgcttgttcgGACTCCTCATCATTTACTCTGC
ACTTCTATGTCTTAAATGGACTTCATTTAACGTCACCATAATCTCCTCAC
CATTTGCTTGAACAgagtttttaaacaaaaagaacaactatcttcgtagt
ctagcaagctaggcGACTAATtaagacatagtagaaatataaagcaaaaa
gtattaGAGGAAACAagttttatacaaactaaaacccgtaacaataatcg
tactatcatataacacctataCTACtctattacacgcattataaacgact
ccagtctactttCTTCGATTCTCGCGCTACACAAAATTAATAAATTCTTG
AGAAATTGTAttctttttttcccaaaataccttggaaaaattgctcaaaa
ctgTCATAGACAAGCAAATATGCttatatattataaaatgaTACTAGTCT
ACGATCCAAAATATAGTATTATAGATAATAACGCATTCTTTATACCATAT
GCATAATTCCAGGTGGCTTTGGAAGTGTTATCATATCACAGTATGTGCAC
AGAGTATGAAGTAGATACTGTCAAAAACCATGACCTGGTCAACACTAAGG
AACAAGTCGGAGCGTAAGCATCTTATTTTTATTCCAGTCTGCAATGTTCT
TCAGCCTCATACGAATTTCCGTCTTAGCGTAATATAGAAGGAGGCTTTTC
AGTCTGGAAATTCAGGAAAGTTTAGGTTAATTTTAATGTGTTAATAAAGT
TCTTTTCCCATCTGAGATGAAAGGCTGTGACACTCTCAAATGTCTATTAT
CGATGTAAAAAAAACTGTTGATCATATGAAGCCTTCAATTGCTACAGTTA
ACAAGACTGCTTTCGTCTTAAATTAATTCACCTCTAGCAGATATTCAAGC
ACTGGATTCTATGCTCTTTTCATCATCAGGTTCGAGTTGAATATATTGGA
TTTAGAAACTATAGAAATGTCAAGAATCGCTATTGATCTTTTCACCGAAC
TGTTCCAAACTGATAGGTTAGTATcgctaaatttaaaaattttgtgaaGA
CTTGAATGTAGGTTCTGcgtgtttttttttcgataaGGATTTCAATAAAG
GTTTCAGTGTTTCCCTTAGAGTTTTGCAGAGCCATTATTATTAGATTTTC
CATTATTTTGCCACAAAATTTTGCTTACTTGCGACCCTTTCATTGCACTT
TTGAAAACCTGATAGTTTCCCCTGAGAGCAGTTCCTTTTAGTACTAATTT
ACCTTAAAATACCCTTTTGTGTATAGTATGTGTGATATAGATATTCTGAC
AGTTTGAAAAGAAGTCTACTAGGGGTTTGCTACTGTGAAAAATCTCGCCT
TTCTGGTTTTTGATCATCAAAAATTCATAAGATTATTGCTTTACATTTCC
AGTCGTTTTGATCCCGAAGAATTAACACGTTTCACGTTAACGGTACGGCG
GAATTACCGACGAGTTCCGTATCATAATTGGTCACATGCTTTTACGGTGG
CCCATTGTATGTATTGTGTGGTGGCGAACTCTAAAGGTCTACTCACCGGA
CTTGAGGTAAGTCATGTTTTGTTTATTACTTATATTCATGATGTGCACCA
TTACTAAGTCTTCTAccgacccaacagctgatttgtTGCAAGTGACTGAT
TTAACTTCACTTACAaacaatcagctattgggtccgtgatgtgaTGTAAG
AAGACTTTGCAAtggcgcatatcatgaatagacttCCTTCCACTGTCTGA
TGAATGCTTTATCAACATCCCAGAAGATGATTACCCCCAATGTTGCAGAG
GTTGAATTTTCTGTCAGATAAAGTCCTTGGGTAGCTCATTTTGTACGCTT
CTTCAAATCGATATTAATGTTTATCTATCACCTAGTTTCCCCTTTCTGTA
ACATATCATCCTAGAAAAGTGTTACTTCGCcaaactctcgctaattcgaa
cttctattattcgaatctttctataattcaaactaGTTCCCTTTATGGGG
AAAGCCTTGTTAAATattctctattattcgaatctttttacccTTTAaga
tcgaattacagagagtcaactgtatatacTCCATCTTTCATCTCCAGGCT
GTAGCGTTGTACGTGTCCTGTTTATGTCATGACTTGGATCACCGTGGTAA
GAACAATGAATGGATGAAGACAGAGAGTACGCCTCTAGCAGCCGTGTATA
CAACCTCTACACTAGAGCATCACCATTTTAATCAAACCATCACTATCTTA
CAGGTTGATTCCCTTATTTTCGTTCTCATAAAGGGACTACCTCTTCCTAC
CTAAGTGCGAGGGTCTTGACTCTCTAAAATCAAGTTgattattttcatta
aattgaACTTGTCCTATACTGCCAATATTTCTCCTAACAGAATGTGTtac
tttaaaatatttgttgatgGTGTCTGGTATGGCTTGTAGTTTACATTATG
CCAGGGAGTCATTAGCGTGGTGGATTGACTAAAATTcgggcaaactgggg
aggcaaatttagaagattttgattttggcgccccctatgaaaagtaaata
tttttggccgaaaactaCCGTATGtaaggtgtaaaagagcaaaaGGGTGC
CGAAATTAGTAATTAGAGGCGTCTTTTTGCACCCTTTGTATTTCGGTGCC
CCTTCGAAAAACTCTGCCGTTGGGGCATTTGCTCCTTGTCACCACGCTAC
TTTTAATCCAATATCTCAATaactaaaaataaatataaaaataactaAAT
TAACAAATACTAAAGTCCTCTGTACCAtttattttacgttttttgcctct
CGTTAACTCGAAGTCACCCCCTTGTGGTGAAGGAGTGAATAGATGTTTTc
ttaacaagcaaacttccaTTTTAGCACGAAGGGCACAACATCTTCTCACA
CTTGAATTCGTCAGAATATAAACAGATCTTGGGAATTATCAAAGAATGTA
TCCTAGCAACCGACCTTGCTCAATTCTTCGGAAACAAAGCTAAACTAAAT
GATATCGTTAATAAAGGGAAATTTAGTTGGGAAAATTCTGAACATAGGTG
AGTGAAGAGATCACccataacattttcaaatacgCTAAACCCCTTGTCAT
TAGATGCAGATttgtgaatttcaatttttttttcctgaaataaaactTTC
GTCGTCTTTTTTCTGATCAAGATAATGATGGTGAAACTTTTCGGattatc
ttttatatttttttacttcaaattgaCAGCTGCTCATGGTTCCCTTGTCA
TGCTCATATGAAATCATATGTTTTcttttacgaaaagtcaaaaacttgaa
aatgctAAGTTTAGTAACTACAatcgactctctctaattcgaatatcttc
tattcgaatctttctataattcgaactaaaatatagGTCCCCTCAGCCag
aaattagtataaaataATACCTGTAATTTATTCCTAAAAGATTCCTAAAT
Ctttttctaattcgaagaaaattattggtcccttgaagatcaaattggat
gtttatgtttcttttctttaaaggggccccccagcggtttgcgtgaatgc
gtgaatgggcattttcggttgcgtgaatgcgtgaattgaaaaaaaaactt
gcgtgaacgtgaaaattcactttttggttgcgtgaatgcgtgaatcatgg
ctattttgtgcgtgaatacgtgaattttccctttcttGCAGAAATaatgt
gcagttttcccgattttctaatgtttccccgatttttcccgaaaattttc
cgatttcctgaaaaatcgggttattttCGAACAATAAGGGAACGTATTTG
AATAGTAAAGcgttgtttatgagagtttcttgttgacagtgaCTCTTTAA
TATCACCGAGAATAATAGAGATTATCGAATataagaacgtcgaattagGG
AGTGTCAACTGTAGTTCAAAATGAACTCTGCAGTTCAAAATAAACTTAGC
TCGAATCTAATCAACATCAACTAAATAGTTAGGTAAAAAGATTTGGAGGT
TTCTCCCTGGACCGTTGAAGGAATTTACAGGCCAAAGTACAAACCATCTA
ACTAGAACCATTAAAGACtaaatttaaatatttcaagatttgtttttctt
ttaaaggaGGATGTTCCGTGCACTGTCAATGACAGCTTGTGATTTATCAG
CCTGTGCAAAACCATGGAAAATACAATATGAAACAGTCAAAGTTATTTTC
CAAGAATTCTATGCTCAGGTAATGCTTCAATGTCGACTCTGTTCTAAATA
TTTAAGTaacttttacatttttacatttCCGTCGATAAAAGAAATATATT
TCAAGTAAAACATTCGCACCAAATATGGGTTTATTAGAGAATGTCCATAA
CTTTAGAATCTGCCAAATTTTCGagaaaagtttggaaatgaaatgtgcAG
TACtcacaaaaaattcaagaattcAACTCGATCGGAAATTGTACGTCAGA
GATCGTATAATAGGGACATTTTTTCAAGCACACCCGGTATACTCAGTTTC
TTGGTATGGAAAAAGCTTATGGAGTGCTATATCTAGAGAATCTTCTAATT
ACTTTATCTTTTTCATCTTGTTCTCCATGACCAGGGAGACGAAGAGAAAG
CATTAGGGCGAACACCTGTTCCAATGATGGATCGAGATACTGCTGATAAA
CTCCCAAATCACCAGGTTTGTGTAGCAAACATACTTTTCTCATCAGTACC
CTGTGGGAATATTATGTATTTAAAAGTCAATGggggatattcaaattttt
tgtttgatgctcaaaaatccaatttgaaatctctatttttatttttatta
ccgGTGTTGATGAGGGTTCACTTTATTTTGGCTAATGGGACCCTAAGCTA
AACCCTTAATGTTTGGTACCGTTGGAAATCTCTTTCAAAGCTCTATCTTT
TCAGCGTGTTAGATTTTTGAATAAGGTCCTCGATCAAAACTACCGGCAGT
CGATAGTATTGTTCCTGAGAGAACAAAATTTCGCTGGTAGGACGTCAAGG
AGTTAAACATAATAGAATTAATCACCGGGTGGTTTTTTCGGCTGGTTTAT
CGAATAGGTAGCAGGGTCTACTGTATTTGTCACAAGATTTCACGGTGAAG
GCAAATACAAAAGCCGATTTCTTACGCATTTGTAATTGGCTCTTGTCACA
ATTCCCTTCTCTTCTCTCTCGATTCTTTGTTTGAGCAACTACAATAACCT
GACCTTTCCATTTCTTTAGGTTGGATTCTTGGTGGGAATTTGTATCCCTG
GTTATGAATTACTTTGCAAGCTTGTCCCTGGTACCAAGCCACTTTTAGAC
GGAGCTAAGTAAGATTGCTTAAACTCATTCGTGAATTGAAAAACTTCGTT
GATTTCCTTTCTTACTATAAGGGACTAACTCTTAGGATCCGCGGCATCTT
TCATGAGACGTAATCGCATGTGGTTTGTTCGATAGTAGTTGGATTTGAAG
ACTTTTTTGCCTTAAGGCTTACGAATtcgagttatcaaaacaaatattta
cAGCCCGAAGAGCTAAATCAAGTTTTCGTGGTTTCGTCTAACTATAAAAG
TCTTATCAAACGAATTGACTTAGCCTTAACCGAAGACCTTGAATAAATCT
CTTGCTATTGACTAAGCTCACGATTCCTCAATATCTAACCGGcgtttaat
ttattttttcaggaaaaattttGCTGTGTGGAGTGAAATGGTAAAGAAGC
AAAAcgaagaaaaagagaaagaaaaagaaagagaaaagatGAAACAACTT
GAAGAAGCAAAGAAGGAGAATAGAGACGAATAAAAGATTAGTTGAGGTAC
AAGGTTTATCTTCCTGGATACCGTAGTGTtagaaaaagcttttttcttct
gaCTTTTGGTGAACATTTTCTACTAATGAGGATcaagtttgttttttctt
ggttGGATGGCAAAATTGGCGATATATTGGCGACAATCAAATTGTAACCA
GTCTTGGTTGAATAATGCAACTTATGGGAGCATGGCATCGTTTCAAATTT
ACTCTACGCTTAGCTTATGAGTGGCTGCCTTTTATTGCAAAGTACCAGAA
CTACTATTTTCGCgactttttcttgaaaaacgGCAACCTTCATCAGTGTA
CCATAATTTTCATCACccctttttgtttttgatacatAAAGTATTGGGTT
TGCAAGGTGAGGTGACAGGTATATATATCCGATTCTGAAATCATTTCAGG
CAATTTTCACCAAACTTTTGGTAAAACCTAATCTAATAGAAAACAATTTT
GATGACCTTGATAATGATGTATTCAGAGAGAATTTATCGTTTTTGAGAGA
TTTCGAGGTGTGAAACCTTTGTGTTCGCACGTGGTCGATGCCCATTTTCC
CTGCGCCTCCAAGAATCTccctgaaattaacatacagggtgggcaaaaaa
aaagtggtcaaaaaattgtttcTGCTTGCAGAGCAATTAGTGCCATAGAA
ATTCTAAAACTTTGATAAATtctctttatattttttgatatgtTCCTGGA
GACAATCTATCAACTTTCTGACAATANGGGTACAAGGTTTATCTTCCTGG
ATATCGTAGTGTtagaaaaagcttttttcttctgaCTTTTGGTGAACATT
TTCTACTAATGAGGATcaagtttgttttttcttggttGGATGGCAAGATT
GGCGATATATTGGCGACAATCAAATTGTAACCAGTCTTGGTTGAATAATG
CAACTTATGGGAGCATGGCATCGTTTCAAATTTACTCTACGCTTAGCTTA
TGAGTGGCTGCCTTTTATTGCAAAGTACCAGAACTACTATTTTCGCgact
ttttcttgaaaaacgGCAACCTTCATCAGTGTACCATAATTTTCATCACc
cctttttgtttttgatacatAAAGTATTGGGTTTGCAAGGTGAGGTGACA
GGTATATATATCCGATTCTGAAATCATTTCAGGCAATTTTCACCAAACTT
TTGGTAAAACCTAATCTAATAGAAAACAATTTTGATGACCTTGATAATGA
TGTATTCAGAGAGAATTTATCGTTTTTGAGAGATTTCGAGGTGTGAAACC
TTTGTGTTCGCACGTGGTCGATGCCCATTTTCCCTGCGCCTCCAAGAATC
Tccctgaaattaacatacagggtgggcaaaaaaaaagtggtcaaaaaatt
gtttcTGCTTGCAGAGCAATTAGTGCCATAGAAATTCTAAAACTTTGATA
AATtctctttatattttttgatatgtTCCTGGAGACAATCTATCAACTTT
CTGACAATACATTCCTCAACAATATTTCtttgttgataa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_011509	XLOC_011509	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000357	supercontig	sc0000357:194143..201481 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.116051	0.0010649	0	0	1.1971	0.992402	0	0	0	0	0	0	0	0	0	0	0	0	0.036411	0	0	0	1.89	1.67098e-07	0	0	3.35619	3.99622	0.396709	0

Blast

[Close]

BLAST of TCONS_00020500 vs. Swiss-Prot (Human)
Match: PDE10 (cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A OS=Homo sapiens GN=PDE10A PE=1 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 3.604e-93
Identity = 151/327 (46.18%), Postives = 211/327 (64.53%), Query Frame = 3

Query:   12 YKVALEVLSYHSMCTEYEVDTVKNHDL-VNTKEQVGAFELNILDLETIEMSRIAIDLFTELFQTDSRFDPEELTRFTLTVRRNYRRVPYHNWSHAFTVAHCMYCVVANSKGLLTGLEAVALYVSCLCHDLDHRGKNNEWMKTESTPLAAVYTTSTLEHHHFNQTITILQHEGHNIFSHLNSSEYKQILGIIKECILATDLAQFFGNKAKLNDIVNKGKFSWENSEHRRMFRALSMTACDLSACAKPWKIQYETVKVIFQEFYAQGDEEKALGRTPVPMMDRDTADKLPNHQVGFLVGICIPGYELLCKLVPGTKPLLDGAKKNFAVW 989
            Y+V +E LSYHS+CT  E   +    L V   +++  F  +I   E +    I + +      T S F+ E+L RF ++V++NYRRVPYHNW HA TVAHCMY ++ N+  L T LE   L ++CLCHDLDHRG +N +++    PLAA+Y+TST+E HHF+QT++ILQ EGHNIFS L+SSEY+Q+L II++ I+ATDLA +FGN+ +L ++   G  +  N  HR     L MTACDL +  K W +   T   I+ EF+A+GDE K LG  P+PMMDRD  D++P  Q+GF   + IP Y  L +++P T+PLL   + N + W
Sbjct:  428 YRVTMEKLSYHSICTSEEWQGLMQFTLPVRLCKEIELFHFDIGPFENM-WPGIFVYMVHRSCGT-SCFELEKLCRFIMSVKKNYRRVPYHNWKHAVTVAHCMYAILQNNHTLFTDLERKGLLIACLCHDLDHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIRKAIIATDLALYFGNRKQLEEMYQTGSLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKKLGIQPIPMMDRDKKDEVPQGQLGFYNAVAIPCYTTLTQILPPTEPLLKACRDNLSQW 752

The following BLAST results are available for this feature:

BLAST of TCONS_00020500 vs. Swiss-Prot (Human)

BLAST of TCONS_00020500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PDE10	3.604e-93	46.18	cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphod...	[more]

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TCONS_00020500 (transcript) - C. hemisphaerica