TCONS_00020509 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020509
Unique NameTCONS_00020509
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1092

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020509 ID=TCONS_00020509|Name=TCONS_00020509|organism=Clytia hemisphaerica|type=transcript|length=1092bp
GCAAGTAAAGAAGTATGTACAACGTTGATTGAAACAGTGAAACACTTAAA
CTAAAGTTAGTGACTTATGAAATTGTTGAGCTGTACTGGAAAAGCTGAAG
ACATCATTTTGTTCAGTTTGTTGACATAGTAGATTGGTGAATGTCACAGT
GAAAGAAAAACACaagagcagaaactttcggATGAGGATAATCTGTCGCG
AAAATAAAACTTAATTATAGAGactcttgaaaaatattctcaCAAGCTCT
ATTACAGATTACAGTCAAGATTTTTAAAGCTGTTGGGACTTTAGCACGAT
TGTAAAACACAAACAAGAGAAAGTTGTTTTTCGTAACATCCTCTATTCGT
CTGAAACTCCTATCCAAAATGCCGGACACCGAACAAGATGTAACCACTGA
CAACAATAATAACAAAGAACAGTGTGGAAAAGTAGATTCTCCTCCACCCC
CGCCCGTCATCGCTCCACGGAAAGATGACATGAAATCAACTTCAATGGCG
AACTACCGGCAAGTCAAACGCATGAATAAGAAGAAATCCTCATCAAGATT
AAACAGTCGATCTTCGAATGGTTCGATCAATATCGAAAACGCAAATTCAT
CGACCCAAGCATGAAGCATCTTActatattttgaaagttttatcaGATGA
TGGTGTATTGTGTATTGTGTTTAATACATACAACGACATACAAATGCTGC
ATAAAAAGATTGGATTCGAGTTTGCTAAGGTTGAGTGACTTattgacaaa
atttattgattctCCTTTAGTAAACTAGAACCCAATCTCCTGTCTCTAGT
GTTAAGATATTTGAACCCCTAGATTTCCCATTAGGGATTCGATTCATCAC
AGTGGAAATTGATaatatttaaaacttttgttgtgCTTTTGTATATGAAC
CATGACGAATTAAGTTGTCACTTGTCTTCGATTCTCTCTACATATTTGTA
AAAACGAAAAATTGTATATATTGATATGAAAGTAGAATAGTTTTTCTCAa
taattttttgtccaaaagACATGCATTACAAAAACCAAATTCTAGTTATg
tattacacccccttctcacagaaccgATAGGATTTCTTCAGC
Run BLAST on NCBI

transcript from alignment at sc0000357:35789..37313-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020509 ID=TCONS_00020509|Name=TCONS_00020509|organism=Clytia hemisphaerica|type=transcript|length=1525bp|location=Sequence derived from alignment at sc0000357:35789..37313- (Clytia hemisphaerica)
GCAAGTAAAGAAGTATGTACAACGTTGATTGAAACAGTGAAACACTTAAA
CTAAAGTTAGTGACTTATGAAATTGTTGAGCTGTACTGGAAAAGCTGAAG
ACATCATTTTGTTCAGTTTGTTGACATAGTAGATTGGTGAATGTCACAGT
GAAAGAAAAACACAAGAGCAGAAACTTTCGGATGAGGATAATCTGTCGCG
AAAATAAAACTTAATTATAGAGACTCTTGAAAAATATTCTCACAAGCTCT
ATTACAGATTACAGTCAAGATTTTTAAAGCTGTTGGGACTTTAGGTAGAA
AATTTGATGTGATTTTCGTCCAAGACATTCTTTCACAACTTCAGTTTAGC
TAGATGATGTTTGTATCTTTTTCACAGAATCTATATTGCTAGAATGGATA
TATTGTCATAAAGAGATATTGCTGTTAAAAATATTTTTCTAACATTCTTC
TACTTGATTTAGTTCTCTTATGTGAATGAATAAGTTTGATTCTTTATTTT
GCCTCCCAATAGTTCAATAAATTGGCGTCAGTACGTCGCTCAAGTTTAAG
TTTACCTTATTCTATTAGCCATTTTGTAAATACATTCCTTCAATACCTTT
CTTTTTTGGAGTTAAAAGCTTTTTTTCGAATTGTATTCTATGCTGTATAC
GAAGCATGTATGATTCATATCAAATATATCTTAGAATCAAAGGCGACATT
TAATCTAAAGTTTCATCTCTTTTACAGCACGATTGTAAAACACAAACAAG
AGAAAGTTGTTTTTCGTAACATCCTCTATTCGTCTGAAACTCCTATCCAA
AATGCCGGACACCGAACAAGATGTAACCACTGACAACAATAATAACAAAG
AACAGTGTGGAAAAGTAGATTCTCCTCCACCCCCGCCCGTCATCGCTCCA
CGGAAAGATGACATGAAATCAACTTCAATGGCGAACTACCGGCAAGTCAA
ACGCATGAATAAGAAGAAATCCTCATCAAGATTAAACAGTCGATCTTCGA
ATGGTTCGATCAATATCGAAAACGCAAATTCATCGACCCAAGCATGAAGC
ATCTTACTATATTTTGAAAGTTTTATCAGATGATGGTGTATTGTGTATTG
TGTTTAATACATACAACGACATACAAATGCTGCATAAAAAGATTGGATTC
GAGTTTGCTAAGGTTGAGTGACTTATTGACAAAATTTATTGATTCTCCTT
TAGTAAACTAGAACCCAATCTCCTGTCTCTAGTGTTAAGATATTTGAACC
CCTAGATTTCCCATTAGGGATTCGATTCATCACAGTGGAAATTGATAATA
TTTAAAACTTTTGTTGTGCTTTTGTATATGAACCATGACGAATTAAGTTG
TCACTTGTCTTCGATTCTCTCTACATATTTGTAAAAACGAAAAATTGTAT
ATATTGATATGAAAGTAGAATAGTTTTTCTCAATAATTTTTTGTCCAAAA
GACATGCATTACAAAAACCAAATTCTAGTTATGTATTACACCCCCTTCTC
ACAGAACCGATAGGATTTCTTCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011512XLOC_011512Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020509-exon-sc0000357-1575043694:37020..37313TCONS_00020509-exon-sc0000357-1575043694:37020..37313Clytia hemisphaericaexon
TCONS_00020509-exon-sc0000357-1575043694:35789..36586TCONS_00020509-exon-sc0000357-1575043694:35789..36586Clytia hemisphaericaexon
TCONS_00020509-exon-sc0000357-1510915933:37020..37313TCONS_00020509-exon-sc0000357-1510915933:37020..37313Clytia hemisphaericaexon
TCONS_00020509-exon-sc0000357-1510915933:35789..36586TCONS_00020509-exon-sc0000357-1510915933:35789..36586Clytia hemisphaericaexon
TCONS_00020509-exon-sc0000357-1491911889:37020..37313TCONS_00020509-exon-sc0000357-1491911889:37020..37313Clytia hemisphaericaexon
TCONS_00020509-exon-sc0000357-1491911889:35789..36586TCONS_00020509-exon-sc0000357-1491911889:35789..36586Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000357supercontigsc0000357:35789..37313 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.848554	0.61581	0.892089	1.86454	0	0	0	0	0.0441569	1.99002	0.00266679	0.0861821	0	0.0322913	0	0	0.0665886	0	0	0.302333	0.192433	0	0	0	0.116945	0	0	0	2.11683e-05	0.0619209
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020509 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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