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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020517 ID=TCONS_00020517|Name=TCONS_00020517|organism=Clytia hemisphaerica|type=transcript|length=4980bpRun BLAST on NCBI transcript from alignment at sc0000357:56475..78395- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020517 ID=TCONS_00020517|Name=TCONS_00020517|organism=Clytia hemisphaerica|type=transcript|length=21921bp|location=Sequence derived from alignment at sc0000357:56475..78395- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00020517 vs. Swiss-Prot (Human)
Match: S4A10 (Sodium-driven chloride bicarbonate exchanger OS=Homo sapiens GN=SLC4A10 PE=2 SV=1) HSP 1 Score: 584.334 bits (1505), Expect = 0.000e+0 Identity = 374/1108 (33.75%), Postives = 574/1108 (51.81%), Query Frame = 2
Query: 593 SERVKFILGGDGEEEKQVLETPQLFTELEELFVHLDGNAEWKETARWYKYEEDVEEGGDRWSKPHVATLSLYSLFELRSSLTAGTVILDMEATSLNEISDSVLDNLITCNKLDKGFRQKVKETLLCKHRHHRSAGFRRNLSNIMSSRKSFNHSASKLSRNGTNGHLQDHNTGHTTPNGTAEHTDDHHTNPTNIKLFRNYSQPAFPNLKSQPSIIERSESLPQXXXXXXXXXHLIYQSPPSHDGEDETMENKTPGFLKRLPSNAEASNVLVGEVDFLEKPIAAFVRLSKSCIIDDLTEVPIPTRFVFVMLGPAVSQGRYHEIGRAISTLMADDVFHDVVYKAKCREDLIAGIDEFLEQVTVLPPGEWDPSIRLDPRLYNHHRPRRIAIEPRLEPPMEHSDKLSDGNDGGSISENSHSSTKTNRLFSGLSRDFN-----IWRSRKRDYKDGFSMRCIGTAIFIYLLLLGVISTIGENETGSTGGLIGTREHILALCISGLVFTVFSGQXXXXXXXXXXXXXXDGLLYNVCSDYNIDFLSFRMLIGLWAVVFLAIFVAVNLSSYLKFFTRFSLEIFVIVPALVLLCYGFVHMCYMIQLYAALPGTFSNQ-------TCLCVQSYREPLNMSIPINNYTLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRQQYRVKQKILHNIHFRDCIKKDMSLVGEACMH------GVYPFTSILTVSSIVLFLFLTSFQHLGYLPKQVHQFFQNFAALIVVIALSASANQFNINIRYLSIPKSFAPNGIERTQWIVDPLVSNEAWIIVLAVIPAFILALMIFVEQQLSARQINNHYALLKKGHGYHLDLAVVCVGLFISSVFGLPFCVASIILSINNVYSLTTKSQADFIGCDTK---IKEQRLSNLLTYVLITLTPTMRPILRYIPFPVLYGLLIVALFKTFAGTQFSERFTLLFMPKEKQPDIRYLRQVPLISVNIFTLSQVVLTVLLCVARGTLAVMVFPIVTILLIVMRALMERILPMRDILALDEPLPSFRCILRMCRKPRTELLKPESIEKGALLADESHEDV-LP---DINKDLDRVNISEELSKTAAWKQLTFAENNS 3841
S+RV+FILG + ++E+ + LFTEL+E+ +AEW+ETARW K+EEDVE+GG+RWSKP+VATLSL+SLFELRS + GTV+LDM A +L EI+D VLD ++ +L++ R +V E L+ +H H ++ L+N + +SF K S + D N G +A ++ + + ++S+ K S + ++ P H E E + F+K++P AEASN+LVGE++FL++ + AFVRLS + ++ L EVPIPTRF+F++LGP +YHEIGR+I+TLM D+VFHDV YKAK R DL++GIDEFL+QVTVLPPGEWDPSIR++P P+ + + + + P + + G + +T R+F GL D W D++D FS++C+ + +F+Y + + T G +T G I E + ++G+ +++F GQPL +L P+ +F+ +L+ C +Y + +LS R IGLW I VA + SS + + TRF+ E F +L+ + + + + + +L A P N +C CV EP N S N TL I N+ +C VG AC H V ++ IL S++ L L F+ Y P +V +FA + ++ + I L +P F P +R W V PL N W ++ A+IPA + ++IF++QQ++A IN LKKG GYHLDL +V V L + S+ GLP+ VA+ +LSI +V SL +S+ G K I+EQR++ L+ ++L+ + M IL++IP PVLYG+ + + G QF +R L +MP + QPD YLR VPL V++FT+ Q+ LL + + + A +VFP++ + L+ +R LM+ + R++ LD+ +P + + +L E E+ ++LA E V LP D +NIS+E+SKTA W+ L +NS
Sbjct: 96 SQRVQFILGTEDDDEEHIPH--DLFTELDEICWREGEDAEWRETARWLKFEEDVEDGGERWSKPYVATLSLHSLFELRSCILNGTVLLDMHANTLEEIADMVLDQQVSSGQLNEDVRHRVHEALMKQHHHQN----QKKLTNRIPIVRSFADIGKKQSEPNS----MDKNAGQVVSPQSAPACVENKNDVSRENSTVDFSKGLGGQQKGHTSPCGMKQR---------------HEKGPPHQQEREVDLH----FMKKIPPGAEASNILVGELEFLDRTVVAFVRLSPAVLLQGLAEVPIPTRFLFILLGPLGKGQQYHEIGRSIATLMTDEVFHDVAYKAKDRNDLVSGIDEFLDQVTVLPPGEWDPSIRIEP-------PKNVPSQEKRKIPAVPNGTAAHGEAEPHGGHSGPELQRTGRIFGGLILDIKRKAPYFW----SDFRDAFSLQCLASFLFLYCACMSPVITFGGLLGEATEGRISAIESLFGASMTGIAYSLFGGQPLTILGSTGPVLVFEKILFKFCKEYGLSYLSLRASIGLWTATLCIILVATDASSLVCYITRFTEEAFA---SLICIIFIYEALEKLFELSEAYPINMHNDLELLTQYSCNCV----EPHNPS----NGTLKEWR--------------------------------------ESNISASDIIWENLTVSECKSLHGEYVGRACGHDHPYVPDVLFWSVILFFSTVTLSATLKQFKTSRYFPTKVRSIVSDFAVFLTILCMVLIDYAIGIPSPKLQVPSVFKPTRDDRG-WFVTPLGPNPWWTVIAAIIPALLCTILIFMDQQITAVIINRKEHKLKKGCGYHLDLLMVAVMLGVCSIMGLPWFVAATVLSITHVNSLKLESECSAPGEQPKFLGIREQRVTGLMIFILMGSSVFMTSILKFIPMPVLYGVFLYMGASSLKGIQFFDRIKLFWMPAKHQPDFIYLRHVPLRKVHLFTIIQMSCLGLLWIIKVSRAAIVFPMMVLALVFVRKLMDLLFTKRELSWLDDLMPESK---------KKKLEDAEKEEEQSMLAMEDEGTVQLPLEGHYRDDPSVINISDEMSKTALWRNLLITADNS 1104 The following BLAST results are available for this feature:
BLAST of TCONS_00020517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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