TCONS_00020524 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020524
Unique NameTCONS_00020524
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length869

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020524 ID=TCONS_00020524|Name=TCONS_00020524|organism=Clytia hemisphaerica|type=transcript|length=869bp
ATGTCCGTAGATGATTTATACAGTGTTTTTATGCAGGATAGGGGACGACG
GACAAGGCTAAGAACCAGGGCAAGGGTTGTGATCTATTATTCATTTCAAA
TCATGTCTTTTCAGTCAATATATACAAAcataaatataaacaaacacaTA
AAAAATGGCTGAAGACGGTAGCGAATCACCAAAATTTAGATCAGTGTCGC
ACACGTGGAAAGACGTCACAAGCCCTATCTACGATGGATTAGAGGTCATT
GGTACACATTCCAAATCCAAAAGTCGTCTCCACGATCGAACGAGGAACTC
GCTTTCAACATCCAGTGTTGATTCGACTGATGGCTCTGGAAAAGGGAGAT
ACAGTACGTATATGGAGAAAGAGATCATGGACCAACCAGTGGCCATCAAA
CAAGCCATGAGTGGACGTGTCGATTTCAAGAATCACCGAGTCAATTTAGG
TGGAATCGAACGATACAGAGATGAAATCAACAGATGCCGGCGAATCATTT
GCGTCGGTGCTGCTTCCAGTTACCATGTAGCTGTTGGCACACGTCAAACT
ATGGAAGAGTTGTTGGAGATTCCAGTCTTTGTGGAGTTGGCTAGTGACTT
TCTGGATCGAGAGGTCCCCGTTTTTAGGGATGATGTTTGTATTTTTATCA
GTCAGTCTGGTGAAACTTCCTCTGTTTTGTCTGCATTGATGTATTGCAAA
CAACGGGATGCCTTGGTTGTGGGGATTACCAATGAAGAGAATTCTCGATT
GTCCGAGGAAACACATTGTGGGATCAATATCAATGCTGGTGTTGAAGTTG
GAGTGACCAGCACCAAGACATACACATGTCAATTCATCTCGCTCGTCATG
TTCGCTATTTTCATGGCAN
Run BLAST on NCBI

transcript from alignment at sc0000357:140274..141581-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020524 ID=TCONS_00020524|Name=TCONS_00020524|organism=Clytia hemisphaerica|type=transcript|length=1308bp|location=Sequence derived from alignment at sc0000357:140274..141581- (Clytia hemisphaerica)
ATGTCCGTAGATGATTTATACAGTGTTTTTATGCAGGATAGGGGACGACG
GACAAGGCTAAGAACCAGGGCAAGGGTTGTGATCTATTATTCATTTCAAA
TCATGTCTTTTCAGTCAATATATACAAACATAAATATAAACAAACACATA
AAAAATGGCTGAAGACGGTAGCGAATCACCAAAATTTAGATCAGTGTCGC
ACACGTGGAAAGACGTCACAAGCCCTATCTACGATGGATTAGAGGTCATT
GGTACACATTCCAAATCCAAAAGTCGTCTCCACGATCGAACGAGGAACTC
GCTTTCAACATCCAGTGTTGATTCGACTGATGGCTCTGGAAAAGGTGATT
TATTTATTATAATGACATTTCTATTTCATCGTTAAGAATGGATATATATC
GTTTACATCCCTGTTTTATCTGGTGCAATTATTATTTGATATGGCAAGAA
GGGTGACAGGAAAATTGCCCTGGGAAATGCCCCCGAACCCAGGAAATTCC
GGTCTGCTTTTTTTTTGCTTTGAAGATGGAGTGAACCATTCGCTAAAGTG
GAAAGATGCCCTTCACCTGTGTAAGGCTCGCAGTGTATCATATAATCTTG
CAACTGTCCCGTCTTTTTAACATGGATTTCCGCTTAGCCTTGGTCGGGTT
TTAGACATTCCATCCAGTTTTACCAAGACGGTTGCAACACTGATGATATT
GGCTAGTATCAAGTAACGACAAATAGATATTCACTATAACTTTATTGAAA
TGGTATTTCATTGATTTCTCTTTATACCCATAGGGAGATACAGTACGTAT
ATGGAGAAAGAGATCATGGACCAACCAGTGGCCATCAAACAAGCCATGAG
TGGACGTGTCGATTTCAAGAATCACCGAGTCAATTTAGGTGGAATCGAAC
GATACAGAGATGAAATCAACAGATGCCGGCGAATCATTTGCGTCGGTGCT
GCTTCCAGTTACCATGTAGCTGTTGGCACACGTCAAACTATGGAAGAGTT
GTTGGAGATTCCAGTCTTTGTGGAGTTGGCTAGTGACTTTCTGGATCGAG
AGGTCCCCGTTTTTAGGGATGATGTTTGTATTTTTATCAGTCAGTCTGGT
GAAACTTCCTCTGTTTTGTCTGCATTGATGTATTGCAAACAACGGGATGC
CTTGGTTGTGGGGATTACCAATGAAGAGAATTCTCGATTGTCCGAGGAAA
CACATTGTGGGATCAATATCAATGCTGGTGTTGAAGTTGGAGTGACCAGC
ACCAAGACATACACATGTCAATTCATCTCGCTCGTCATGTTCGCTATTTT
CATGGCAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011515XLOC_011515Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020524-exon-sc0000357-1575043694:141238..141581TCONS_00020524-exon-sc0000357-1575043694:141238..141581Clytia hemisphaericaexon
TCONS_00020524-exon-sc0000357-1575043694:140274..140798TCONS_00020524-exon-sc0000357-1575043694:140274..140798Clytia hemisphaericaexon
TCONS_00020524-exon-sc0000357-1510915933:141238..141581TCONS_00020524-exon-sc0000357-1510915933:141238..141581Clytia hemisphaericaexon
TCONS_00020524-exon-sc0000357-1510915933:140274..140798TCONS_00020524-exon-sc0000357-1510915933:140274..140798Clytia hemisphaericaexon
TCONS_00020524-exon-sc0000357-1491911889:141238..141581TCONS_00020524-exon-sc0000357-1491911889:141238..141581Clytia hemisphaericaexon
TCONS_00020524-exon-sc0000357-1491911889:140274..140798TCONS_00020524-exon-sc0000357-1491911889:140274..140798Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000357supercontigsc0000357:140274..141581 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
84.5333	82.0773	29.4753	25.6201	39.5202	31.7294	107.422	132.699	116.625	152.632	25.1665	47.3206	12.7155	12.6443	28.1112	28.3673	44.484	38.881	11.7251	11.7557	11.3474	7.38962	38.4212	36.2899	14.4978	14.8831	9.69175	6.34746	16.9537	20.6
Blast
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BLAST of TCONS_00020524 vs. Swiss-Prot (Human)
Match: GFPT1 (Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 OS=Homo sapiens GN=GFPT1 PE=1 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 1.050e-68
Identity = 104/175 (59.43%), Postives = 131/175 (74.86%), Query Frame = 2 
Query:  341 KGRYSTYMEKEIMDQPVAIKQAMSGRVDFKNHRVNLGGIERYRDEINRCRRIICVGAASSYHVAVGTRQTMEELLEIPVFVELASDFLDREVPVFRDDVCIFISQSGETSSVLSALMYCKQRDALVVGITNEENSRLSEETHCGININAGVEVGVTSTKTYTCQFISLVMFAIFM 865
            KG +S++M+KEI +QP ++   M GRV+F ++ VNLGG++ +  EI RCRR+I +   +SYH  V TRQ +EEL E+PV VELASDFLDR  PVFRDDVC F+SQSGET+  L  L YCK+R AL VGITN   S +S ET CG++INAG E+GV STK YT QF+SLVMFA+ M
Sbjct:  336 KGNFSSFMQKEIFEQPESVVNTMRGRVNFDDYTVNLGGLKDHIKEIQRCRRLILIACGTSYHAGVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFFLSQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFVSLVMFALMM 510
The following BLAST results are available for this feature:
BLAST of TCONS_00020524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GFPT11.050e-6859.43Glutamine--fructose-6-phosphate aminotransferase [... [more]
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