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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020528 ID=TCONS_00020528|Name=TCONS_00020528|organism=Clytia hemisphaerica|type=transcript|length=1952bp
ttcctaAGATTCATATataagtcacgaaaaaacgtcgagtaaagctctga
tcggctgagacatgcaaagattacctcatactcgGGGCATTTGAAAATAT
ATGCTTATGTGTGCATTATTCAGCCAATCAGAACTTTACTAAACGTTTTT
TGGGGACTTTTTTATATGAATCTGCTAATCGGAAATTTGTGTATTTATTC
TGTAATAGATTCTGGCATGCACAACCACAAACAGACTTTGGAGAGCTTCC
ACATCGCAAACTGACTTGGAAAGAACAAAAACCGCCACCAAATTATGTGC
GCCCTAATTGTTCTTTTGGACAAGGTACCAAGCCATGGACACGTTGCTCA
AGAAAGCATCAAGAATTATGGAGTTTGCTTGACCAATCAGGCATCATTTA
TTTCGCGCGATCAGGATCAGAACTTGGAGTCATCAGAAACGGCACGTATC
TTTCACACGACGGTGATATGGATGTCTATGTAGATTATCCTCCAGAGAAA
TTCATCAAACTTATTGGAAATCAACTTACACCAAGACCTTACGGAGATCG
GTCAATAGGAAGTGTTAAAGCTGAAACACATTGGGATGTACCTGGTTGTC
CTAAACTTAATATGGTTTTCAATGATTGGATGGTCAACCAAATGGCTTTC
ACCAAACCGCTGCCAACACATAAGGATCTATGCACGTGTTATTTACAGGC
CTCTAAAATGGCTTGCCATAAAGATGCCAAAGAGAGAATGTTTGTGCATT
ATGGGCCCTCATGGTTTGTTCCACTTAACGCCAAATATGGTGATATGCCA
TGGAGGGCAAGAGGAACAACGATACAAACGAAATTAGCAAAAATGGCATC
TAGGGACGGAATAATCTATGAAGAAGCAGTGAGAAAGCTTGATCCAAAGC
TTCAGTATACAAAATATGACATGGAAATGACTTTAGCTCAAAATAATGTT
CTACACGCATCGATTGTAACCAAATATTCTACGTGTGTGCACGGATCTTT
TTGTTAAgctcttttgagaaatttgagtgtatttagaaaaatcaacatcg
ctttcattttctttgatgATATAACATAGGGGAACCAATTTTAACGGAAA
ACTCTTTTCACGATTAAAGAATTTAAGTGAGAGCTGATTTTTGCGAAATG
AAAagttaaatttattttctatcaTTGCGTTCATGGCACCTTTATTCAAA
AGATGGCGCGATGAAAGTGTAGTGTATCCGAAAAAGTTCATCCATTAATA
ATtctttaattgattaaaaaaccaaccgtggtgtccttgaaaaagcagaa
aaattagTGTTAATTTTAATTGCTAATGTTTTAATTTGTTAGTTGTCAAT
TTCACGGCACTTAAATACTTGTCGTACATTCGGGCGAGAAGCCGCACTTT
TTTAGCAAGAACTAATTTTTATGCTATTTATTTGCTAATGGCAAGGTTAA
TTGCATCTTATTTTGTCTAAGCATGTGCGTGTTTTTAAGCAATAAAATAT
AAGGctgttttggaaaaattaattttattttaggtCGTTACTCATATGTA
TCTTAATTTTGGCAAGAATTTATTTTTACGAAAATTTACTataattaatt
ctcgccaaTATTAGTTAATAATTAGATTTAATAGGctttaatttgatatt
tattttttctatataatttttaaaacaatttaaaactttctgactttttt
ttaataagaatggtgttttttcttttaatcatgaatattttttctatagg
aattttttttatttgaatatgATTAGCTTGATCCACAATAACCTTTCCAT
CTCTTTGGTTTCACAAAGTAACCATGATAATTGGGCAAGTGTCATAGCAA
CCAGTGCCATAGCAACCAGTGTAGGAGCAGCAGTGGGATAATACTTTAGA
ATTCATTTTAACCCTACTAGcccccaggggggggggagaACCTACCAcga
tt Run BLAST on NCBI protein sequence of TCONS_00020528-protein >TCONS_00020528-protein ID=TCONS_00020528-protein|Name=TCONS_00020528-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MDVYVDYPPEKFIKLIGNQLTPRPYGDRSIGSVKAETHWDVPGCPKLNMV
FNDWMVNQMAFTKPLPTHKDLCTCYLQASKMACHKDAKERMFVHYGPSWF
VPLNAKYGDMPWRARGTTIQTKLAKMASRDGIIYEEAVRKLDPKLQYTKY
DMEMTLAQNNVLHASIVTKYSTCVHGSFC Run BLAST on NCBI transcript from alignment at sc0000357:87089..89040 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020528 ID=TCONS_00020528|Name=TCONS_00020528|organism=Clytia hemisphaerica|type=transcript|length=1952bp|location=Sequence derived from alignment at sc0000357:87089..89040 (Clytia hemisphaerica)
aatcgTGGTAGGTtctcccccccccctgggggCTAGTAGGGTTAAAATGA
ATTCTAAAGTATTATCCCACTGCTGCTCCTACACTGGTTGCTATGGCACT
GGTTGCTATGACACTTGCCCAATTATCATGGTTACTTTGTGAAACCAAAG
AGATGGAAAGGTTATTGTGGATCAAGCTAATcatattcaaataaaaaaaa
ttcctatagaaaaaatattcatgattaaaagaaaaaacaccattcttatt
aaaaaaaagtcagaaagttttaaattgttttaaaaattatatagaaaaaa
taaatatcaaattaaagCCTATTAAATCTAATTATTAACTAATAttggcg
agaattaattatAGTAAATTTTCGTAAAAATAAATTCTTGCCAAAATTAA
GATACATATGAGTAACGacctaaaataaaattaatttttccaaaacagCC
TTATATTTTATTGCTTAAAAACACGCACATGCTTAGACAAAATAAGATGC
AATTAACCTTGCCATTAGCAAATAAATAGCATAAAAATTAGTTCTTGCTA
AAAAAGTGCGGCTTCTCGCCCGAATGTACGACAAGTATTTAAGTGCCGTG
AAATTGACAACTAACAAATTAAAACATTAGCAATTAAAATTAACActaat
ttttctgctttttcaaggacaccacggttggttttttaatcaattaaaga
ATTATTAATGGATGAACTTTTTCGGATACACTACACTTTCATCGCGCCAT
CTTTTGAATAAAGGTGCCATGAACGCAAtgatagaaaataaatttaactT
TTCATTTCGCAAAAATCAGCTCTCACTTAAATTCTTTAATCGTGAAAAGA
GTTTTCCGTTAAAATTGGTTCCCCTATGTTATATcatcaaagaaaatgaa
agcgatgttgatttttctaaatacactcaaatttctcaaaagagcTTAAC
AAAAAGATCCGTGCACACACGTAGAATATTTGGTTACAATCGATGCGTGT
AGAACATTATTTTGAGCTAAAGTCATTTCCATGTCATATTTTGTATACTG
AAGCTTTGGATCAAGCTTTCTCACTGCTTCTTCATAGATTATTCCGTCCC
TAGATGCCATTTTTGCTAATTTCGTTTGTATCGTTGTTCCTCTTGCCCTC
CATGGCATATCACCATATTTGGCGTTAAGTGGAACAAACCATGAGGGCCC
ATAATGCACAAACATTCTCTCTTTGGCATCTTTATGGCAAGCCATTTTAG
AGGCCTGTAAATAACACGTGCATAGATCCTTATGTGTTGGCAGCGGTTTG
GTGAAAGCCATTTGGTTGACCATCCAATCATTGAAAACCATATTAAGTTT
AGGACAACCAGGTACATCCCAATGTGTTTCAGCTTTAACACTTCCTATTG
ACCGATCTCCGTAAGGTCTTGGTGTAAGTTGATTTCCAATAAGTTTGATG
AATTTCTCTGGAGGATAATCTACATAGACATCCATATCACCGTCGTGTGA
AAGATACGTGCCGTTTCTGATGACTCCAAGTTCTGATCCTGATCGCGCGA
AATAAATGATGCCTGATTGGTCAAGCAAACTCCATAATTCTTGATGCTTT
CTTGAGCAACGTGTCCATGGCTTGGTACCTTGTCCAAAAGAACAATTAGG
GCGCACATAATTTGGTGGCGGTTTTTGTTCTTTCCAAGTCAGTTTGCGAT
GTGGAAGCTCTCCAAAGTCTGTTTGTGGTTGTGCATGCCAGAATCTATTA
CAGAATAAATACACAAATTTCCGATTAGCAGATTCATATAAAAAAGTCCC
CAAAAAACGTTTAGTAAAGTTCTGATTGGCTGAATAATGCACACATAAGC
ATATATTTTCAAATGCCCcgagtatgaggtaatctttgcatgtctcagcc
gatcagagctttactcgacgttttttcgtgacttatATATGAATCTtagg
aa Coding sequence (CDS) from alignment at sc0000357:87089..89040 >TCONS_00020528 ID=TCONS_00020528|Name=TCONS_00020528|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at sc0000357:87089..89040 (Clytia hemisphaerica)
TTAACAAAAAGATCCGTGCACACACGTAGAATATTTGGTTACAATCGATG
CGTGTAGAACATTATTTTGAGCTAAAGTCATTTCCATGTCATATTTTGTA
TACTGAAGCTTTGGATCAAGCTTTCTCACTGCTTCTTCATAGATTATTCC
GTCCCTAGATGCCATTTTTGCTAATTTCGTTTGTATCGTTGTTCCTCTTG
CCCTCCATGGCATATCACCATATTTGGCGTTAAGTGGAACAAACCATGAG
GGCCCATAATGCACAAACATTCTCTCTTTGGCATCTTTATGGCAAGCCAT
TTTAGAGGCCTGTAAATAACACGTGCATAGATCCTTATGTGTTGGCAGCG
GTTTGGTGAAAGCCATTTGGTTGACCATCCAATCATTGAAAACCATATTA
AGTTTAGGACAACCAGGTACATCCCAATGTGTTTCAGCTTTAACACTTCC
TATTGACCGATCTCCGTAAGGTCTTGGTGTAAGTTGATTTCCAATAAGTT
TGATGAATTTCTCTGGAGGATAATCTACATAGACATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020528-exon-sc0000357-1491911889:87089..89040 | TCONS_00020528-exon-sc0000357-1491911889:87089..89040 | Clytia hemisphaerica | exon |
| TCONS_00020528-exon-sc0000357-1510915933:87089..89040 | TCONS_00020528-exon-sc0000357-1510915933:87089..89040 | Clytia hemisphaerica | exon |
| TCONS_00020528-exon-sc0000357-1575043694:87089..89040 | TCONS_00020528-exon-sc0000357-1575043694:87089..89040 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000357 | supercontig | sc0000357:87089..89040 . |
Blast
The following BLAST results are available for this feature:
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