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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020531 ID=TCONS_00020531|Name=TCONS_00020531|organism=Clytia hemisphaerica|type=transcript|length=1244bp
CTCCTGTCTGGTTGATATCCAATCCTAGGTACTGGAAAGTTGAAAACGTT
TCTTTGCTTAAATCAAATGATTTCTGTACATGTGATACAATTTTCTCATG
GAATAGGCGTGTTCCAGCATAGAAGAAATCGTCGACATGACAACATAAAA
CACCTTGAAGCTTTCCTTTGTTTCTCCAAAAGAATAACGCTTGGTCATAT
TTGCTTCTTGTGGCACCAGCTTTAACTAGTTCCTCAGCAGCTTTAAGATA
CCATGAGCGAGGGGCATCATTTAAACCGTAAACAGTACGTTTcaatttcc
aaagttttgaggtaTCCGCCTCTCTTGGCGGTTGAATGAATACTTCGCGA
TTAATTGGACACCCTTGCAGAAAAGCAGCTTTAATGTCCATAGAATGTAT
TTGCCACGAATTGCTCACGGCAATTGTTGATACGAGACAAAGGTTTTCCT
TACAGATAGTTGGGGAATCAGTACAAACTTCAGTATTGATTTCCTCAAAA
CCACGAGCGACTAACCTTGCTTTCATGGTGTTGGTGTCCTTGTCAGATTT
CTCGGTAATAACCCATCTTCATTGTCAACCTCTTCATAGACATTGTACTC
GGTCCATTTCTCTAGTTCTTTTTGTTTAGCTGCTAATACTTGAGGGTTGT
GTAAAGGACTTCTTCTTCAACTGGCTGccattgaatattttcaaaatcaa
cgcaCTTAATANACGATACAACAGGTCTGGCTCTGGCTTTTCGGTAACGG
GTACAAACGTCACAATCCTCTGTAACTTGATCGATAAGTCCCAATAACTC
GTCATCTTTGACTTCTGCATCTTTTGTAATAGTTTTCAGTTTTGCGGAAT
CAACAGGATGTCCAAACTGTTTATGCAGCTTAACAGCAATAGACTTTTTC
TCCTCTTTCGACTTTGTGTTTNCCCGACACTAAATTTTTAACATTAAACc
aatgtttattcttgccaTTAGCTTTTCTAGCACGATTAACAGCGATAAAC
TTTTCTTCATTATTGGAATTTGTTGAGTGTTACTTTTATTTCTACGatca
gtctttttcttatctCCCACCGGATGCGTCGTTTCAACTGTTTGGATCTC
TGGTATCTTTTTTTCGGGTTTAGTAAGCTTAGGTTCTGCGATCGGGTTTT
CAACTAAAATCATAACTGTTTCATTACTAACAATATCGATGTCTAATAGC
TCTGGAATGGGTACTTGTGGTTGTTCATCTTCATCTGGTACGAT Run BLAST on NCBI protein sequence of TCONS_00020531-protein >TCONS_00020531-protein ID=TCONS_00020531-protein|Name=TCONS_00020531-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MKARLVARGFEEINTEVCTDSPTICKENLCLVSTIAVSNSWQIHSMDIKA
AFLQGCPINREVFIQPPREADTSKLWKLKRTVYGLNDAPRSWYLKAAEEL
VKAGATRSKYDQALFFWRNKGKLQGVLCCHVDDFFYAGTRLFHEKIVSHV
QKSFDLSKETFSTFQYLGLDINQTG Run BLAST on NCBI transcript from alignment at sc0000357:149924..151167 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020531 ID=TCONS_00020531|Name=TCONS_00020531|organism=Clytia hemisphaerica|type=transcript|length=1244bp|location=Sequence derived from alignment at sc0000357:149924..151167 (Clytia hemisphaerica)
ATCGTACCAGATGAAGATGAACAACCACAAGTACCCATTCCAGAGCTATT
AGACATCGATATTGTTAGTAATGAAACAGTTATGATTTTAGTTGAAAACC
CGATCGCAGAACCTAAGCTTACTAAACCCGAAAAAAAGATACCAGAGATC
CAAACAGTTGAAACGACGCATCCGGTGGGagataagaaaaagactgatCG
TAGAAATAAAAGTAACACTCAACAAATTCCAATAATGAAGAAAAGTTTAT
CGCTGTTAATCGTGCTAGAAAAGCTAAtggcaagaataaacattgGTTTA
ATGTTAAAAATTTAGTGTCGGGNAAACACAAAGTCGAAAGAGGAGAAAAA
GTCTATTGCTGTTAAGCTGCATAAACAGTTTGGACATCCTGTTGATTCCG
CAAAACTGAAAACTATTACAAAAGATGCAGAAGTCAAAGATGACGAGTTA
TTGGGACTTATCGATCAAGTTACAGAGGATTGTGACGTTTGTACCCGTTA
CCGAAAAGCCAGAGCCAGACCTGTTGTATCGTNTATTAAGtgcgttgatt
ttgaaaatattcaatggCAGCCAGTTGAAGAAGAAGTCCTTTACACAACC
CTCAAGTATTAGCAGCTAAACAAAAAGAACTAGAGAAATGGACCGAGTAC
AATGTCTATGAAGAGGTTGACAATGAAGATGGGTTATTACCGAGAAATCT
GACAAGGACACCAACACCATGAAAGCAAGGTTAGTCGCTCGTGGTTTTGA
GGAAATCAATACTGAAGTTTGTACTGATTCCCCAACTATCTGTAAGGAAA
ACCTTTGTCTCGTATCAACAATTGCCGTGAGCAATTCGTGGCAAATACAT
TCTATGGACATTAAAGCTGCTTTTCTGCAAGGGTGTCCAATTAATCGCGA
AGTATTCATTCAACCGCCAAGAGAGGCGGAtacctcaaaactttggaaat
tgAAACGTACTGTTTACGGTTTAAATGATGCCCCTCGCTCATGGTATCTT
AAAGCTGCTGAGGAACTAGTTAAAGCTGGTGCCACAAGAAGCAAATATGA
CCAAGCGTTATTCTTTTGGAGAAACAAAGGAAAGCTTCAAGGTGTTTTAT
GTTGTCATGTCGACGATTTCTTCTATGCTGGAACACGCCTATTCCATGAG
AAAATTGTATCACATGTACAGAAATCATTTGATTTAAGCAAAGAAACGTT
TTCAACTTTCCAGTACCTAGGATTGGATATCAACCAGACAGGAG Coding sequence (CDS) from alignment at sc0000357:149924..151167 >TCONS_00020531 ID=TCONS_00020531|Name=TCONS_00020531|organism=Clytia hemisphaerica|type=CDS|length=525bp|location=Sequence derived from alignment at sc0000357:149924..151167 (Clytia hemisphaerica)
ATGAAAGCAAGGTTAGTCGCTCGTGGTTTTGAGGAAATCAATACTGAAGT
TTGTACTGATTCCCCAACTATCTGTAAGGAAAACCTTTGTCTCGTATCAA
CAATTGCCGTGAGCAATTCGTGGCAAATACATTCTATGGACATTAAAGCT
GCTTTTCTGCAAGGGTGTCCAATTAATCGCGAAGTATTCATTCAACCGCC
AAGAGAGGCGGAtacctcaaaactttggaaattgAAACGTACTGTTTACG
GTTTAAATGATGCCCCTCGCTCATGGTATCTTAAAGCTGCTGAGGAACTA
GTTAAAGCTGGTGCCACAAGAAGCAAATATGACCAAGCGTTATTCTTTTG
GAGAAACAAAGGAAAGCTTCAAGGTGTTTTATGTTGTCATGTCGACGATT
TCTTCTATGCTGGAACACGCCTATTCCATGAGAAAATTGTATCACATGTA
CAGAAATCATTTGATTTAAGCAAAGAAACGTTTTCAACTTTCCAGTACCT
AGGATTGGATATCAACCAGACAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020531-exon-sc0000357-1491911889:149924..151167 | TCONS_00020531-exon-sc0000357-1491911889:149924..151167 | Clytia hemisphaerica | exon |
| TCONS_00020531-exon-sc0000357-1510915933:149924..151167 | TCONS_00020531-exon-sc0000357-1510915933:149924..151167 | Clytia hemisphaerica | exon |
| TCONS_00020531-exon-sc0000357-1575043694:149924..151167 | TCONS_00020531-exon-sc0000357-1575043694:149924..151167 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000357 | supercontig | sc0000357:149924..151167 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013103 | RVT_2 |
Blast
The following BLAST results are available for this feature:
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