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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020558 ID=TCONS_00020558|Name=TCONS_00020558|organism=Clytia hemisphaerica|type=transcript|length=640bp
GAAGATTTCAAATAAATGTGTATCCATGGCAATATTTGATCCTAACCAAT
CAAATGACAAAAATATGTTGATAAGTCAAAATGGCGGACTATCAACTAAT
GATGTTCGTTATGACGATAATAAAatcaacaatgatagaatgGATAATTT
TGAATCCGATGCCgtacaaaaagatcaaaatcaaaCTTATCGGAATACCT
TTAAATTCTGGTTGAAAAGGCGCTCCTCTGGTTTTCATGTTTGCTTTGtt
gaaaaaacgaaagtggaaaATTCTTCACAAACTTCATCTCCGGACAAATT
GCCGAGACCGAAAGAACAAATTATTGAAGATGAAATATTCATTGATTTGA
ATAATAATGAtgttgaaagctctttttataATTTGGATGATGCTTTTCCC
GATTCTCTTTTATCGGATGAAGAATATTCCGATTCATTGGTATCGGTTGA
AGAATCGGGACATCAAGGTTACCCCGAACACATCGGTTATCCAGACTTCA
GGAGGCGTTTTGATATCCTGTTAGCCAAAGAAGATCGTCTAGCTGAGCCT
GTACTTGACGAGAAAAAGgtTGTTTCTGACATGGTGAAAAAGCTGGAAAT
TGACGAACGAAAATACAAACTTGGCCTCAGTCAGGTATTT Run BLAST on NCBI transcript from alignment at sc0000358:143865..150166+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020558 ID=TCONS_00020558|Name=TCONS_00020558|organism=Clytia hemisphaerica|type=transcript|length=6302bp|location=Sequence derived from alignment at sc0000358:143865..150166+ (Clytia hemisphaerica)
GAAGATTTCAAATAAATGTGTATCCATGGCAATATTTGATCCTAACCAAT
CAAATGACAAAAATATGTTGATAAGTCAAAATGGCGGACTATCAACTAAT
GATGTTCGTTATGACGATAATAAAatcaacaatgatagaatgGATAATTT
TGAATCCGATGCCgtacaaaaagatcaaaatcaaaCTTATCGGAATACCT
TTAAATTCTGGTTGAAAAGGCGCTCCTCTGGTTTTCATGTTTGCTTTGtt
gaaaaaacgaaagtggaaaATTCTTCACAAACTTCATCTCCGGACAAATT
GCCGAGACCGAAAGAACAAATTATTGAAGATGAAATATTCATTGATTTGA
ATAATAATGAtgttgaaagctctttttataATTTGGATGATGCTTTTCCC
GATTCTCTTTTATCGGATGAAGAATATTCCGATTCATTGGTATCGGTTGA
AGAATCGGGACATCAAGGTGAGAAAATCTCTAAGTAAATCATTATTCTTC
AGAGCGTACCGCGGTATTTGCACTAATCTATTTGTTTGTACGACCTGCAA
TCCCATCCTCCTTTGCGTTAATTGTTCTTGCACGCTAAAAACTTACGATA
TCAGAAAGGTAAGGTACTTTCACGGTTTTCCAATCATTTCGAAACTAACT
ATGGGATTGAGGCTCGTACAAATTTGAGTTAAAATAATTATAACGTATGC
GACACGGAACAATATCGTATAACGTTCTTCGTTTGCATCCTTGTCTCCGT
CTTCTAAGCACGGCAACGGAAATTTCGGTAGAGCGATGTAAGGATTAATG
TAGCTTCGCAAAGATCTAACAAATGTaggttggaaaaaaattcctTGTAT
ATTTCTGCAAAAATCAACTTTGCAACGGTATTTAAATTTGAAGTTCACTT
AGGCGACTAACCGCTTATTAATTAATTGATTACAGAAAGATAGAAGGGAC
AAATTAGTCTAGTTGGTAGACCACCCTCAATACCATTACAGTATATAGAA
AACTTTTGGGGtacaaaaatgttttatttaagCGTTTTATTCGAAATTCA
AGGGTTTCTGAACGATGTCTAAGCTTTTGATTCCAAAAAATAAGCCCAAA
TTTGATTCTAGCTTTTTTGGGTAGAAACTACTATTTTGGTTAAAAGGtcg
aattaaaatttttttcctatttctccatctttcttattttgaaacAACAG
TTTTCTAACATGTATGTGGAAACTGTGTCTTCATATACTAGACttgtgaa
aaaatcaaatttctttcgTTTCACACAAGtctggaaaaaaattattcaaa
cgAAAATGTTTCCTAACATATCTACTACCTGTAACCTCTTCGTAGTAAAG
CTTTGTGAATGAAATAAGAAATCTTGATGGTGGTTAGACTAAGACTAAGG
AAATTAGATTCGAATATGGGTTCTCAGGCTCGGCGACGGCCAGGAAAATT
AGGTAAATACAGTACTTGCCATTACTTCCCCAGAACAAAATTATTGCAAT
AGTAGTAAATTCGGTCTTGGTGTCCGGTAATTTGCTGAAATATTTTGCAG
TCTATTTCCTGCTTAATGATTTCTGAAGTGAGAATTTTCTTGAACATACC
GATAAATCCATCAACAACATCGATACTTTCGATACATCATTTTCACATAC
TAAAGGAGAttagacagacagacagaaggGTTATTTCCTCGAGTATTTCC
CACTATTCATGaaatgcaccactgcaatgatttcacgaaattatgcaact
tttctgtttttttttaccacccaatacgtcactttttctattgtttaagt
gacgtattggatgGAAAGTTTTAAAAGTCTTCAGAaaactctccagtggt
gcatatcatgaatattataTTTTGATGGACTTTAATACAAACAAATTAAA
GTATGTGACCGAGACGTTGAAGCGAAGTTCTAAGTGAAACCAGAGAAATA
TAGTACCCTAAAATATGGCAGCGTTTATTTTTGCTAAATGTATCGCAACC
AAGTTGagaattaagttttttttaatttacacCAGTTTACAcctctttaa
taatttttacaTTATGGTCGAAATACCATAATCGATACAATAATCGATTG
GATTGTGAAACCTAAGGTTAACACATTCCAGACATAACACGTTTTTATTA
AGAACAtccatttttgaagcctttggatattcttaagtagcctaaaaatg
ttctcagaGTAtccttattttcgccattttgtacAATTTTCTAAGCAATT
GGGAGTTTTAGATTCAATAAAAcctaaaaaagttcttaaacttgttctta
aaattttgtctattgaagccttatgttcttatatagtttgttcttatgaa
agaaaaaaacgtgcatTAAGAGTTTAGATTATAAGATAGAGAGAGAAGAG
AAGAGAAGAGAAGCGgaccctccgatatcatcggaccggaccctatcccg
ggatagtttcctacccctagatagggaaatcacagcgcttaccagacatt
gtactcGTGTGCTCGCGACACAGCAGAGCCGtgctgtatcgatgatgata
ctcACACAGTACGGGAGAACCTTGCGTTCTCGCAGGTACCGAACATATGA
GTACCATCACCACACAACATTCAAGGTCCGGCATAactccccatactctt
gtatcagagtgatggtaccctattcccctcacatggtatgggttgagcCG
GGCCAAGGTACAATTATAAGGTATTCCTTCATTAAAGAGCAGAAGTCACA
GGGAATCTCTATTCTGGTTTCCTTGTTTCTACAAAACTTAAAGGTCTATC
TAACGTTGCTTAAACATCCATATAATGTTATAAACGGACGTTGAAGAcgc
gttgtgtaccagctgggttgCTTCTCAAGCTGATAAACCATTTCAATCTC
GTCACTCCCTTTATATGAATTTTGCATTATTTCAATTGAGTGGATATCTT
CAGTACGGCTCGACCGTGTCCCACCCGATTGATAGCTTCGACATTTTCTG
AAGTCTGAGGTTTGGATTGAGTCGCTCTTGGGTTTAAGCAATGAATTTCG
TATTCTTAAAAAAGTATTTACATAATGGCTAACCGTTTTAACATctctac
acttttttttataagaacatccaaaaattttgaagctttaggatgttctt
aactttttgagttttaagcctaaaaatgttcttaacatgttcttattttt
accattttgtgagcatttttgtccgttttctttagaaattggccatttta
gagtctgcaaagccttaaaacattcttaacttgttcttgacattttggcc
atcgaagccttgtgttcttatataatttgttcttatataaaaacgtCTAT
TCTGTACTCTTTAGGTTACCCCGAACACATCGGTTATCCAGACTTCAGGA
GGCGTTTTGATATCCTGTTAGCCAAAGAAGATCGTCTAGCTGAGCCTGTA
CTTGACGAGAAAAAGGTTAGAAATTATATCTAAATTtaattagatttaaa
tttttatcattataaatattatttatttttgtgaGAGAATCTGACCTTCA
TTTAAACCCCAGCTGGCattcaacgttgtttcaacgttcatcaacgtttt
tcaacgttcatcaacgttaaatggacgttgaaTAAACGTCGGAACAatgt
tgtgtaccagctgggacTGGACTAAATCTTTGATCGAACCTTTTGAAAGC
ACTACTCAATGTGGtggaaaaaacttttaaacGGGAAATGTCATTGTATT
ATAACTAACAACATCGACCCTGATGAGAAAAAggtaagaaaaagttaaga
atatgctTTCAGTTGGTAAAAAATAGAACCTCGTGTCATCATAGTTTCAT
CTTGTGACACTGTTAATTATGTAAAAACcaactttttacaaaaagaaaca
cctaaaaaacaaatgaaaatatacttatactctaggggctgagttaggtc
ccgtatgcgcatcggcgtatagtcattttttcttttgatcatgaaagtat
agtccttgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNacgttttctgactcttcaaggactat
actttcatgatcaaaagaaaaaatgactatacgccgatgtgcatacggga
cctaactcagcccctagagtattaGGCCAGGAAcgaattggattgtaaca
ttaaaatcaattaaaagCTGTTACAAATTGCGTTGGGTCATGATTTCCTT
GTTGTATTTTACTCATTTCCATTTTAAATCCATTTAAAACCAATGCCAAA
ATTAGTCTACACTATTTTAGGCTTctatgaaaaaagtttcttataggaag
tatatctatagaggtctgcgattcggACTaacttattttaaaatttattc
acCGAAAATCTTAAGAGATTTTTAATTCGCGAAGCAAATAACTTTCATCG
ATTCGTATTGCTCAGAGTTCGTACTCGAGATTATTTTGTTCTGATAAGGC
TTTCCATAACATTTaaagtattatttttttatataaaagaaggCGCCTCT
CTTATGCTGACACAgtagaatttcttttttcttttgttcgaAAAAGCAAA
TCGTAGAAAATACGTTAAAATGATGTTCTTTTAAGTCGCAAATAAAAGGG
TGATCTTTCTGATTCATCCTATCTCCTTTCAGGGGTGAGAATGAACCGTC
CAGATCTATATACAAAGTTATTTACAGTTTGATTTCTTTCGATTTCACTT
CGATTGCTGCAGTTGTGGAACTTGTTTGAAGTAGCATTCTATATACTCGC
TTACTTTAACATTGCGTATCCTTAGCTGACTTGTAGGATATGTCACTGGC
TAACTTATAGCTGCCTATGTCAAATCCTTGGCGCATTTCGATTGAAATTT
GCGAATGAAATACAGCTATTTTTATCGAATAGATTCGATCGGCACTCTAT
TTCACAATACCTCTCAATAAACTAATGCAAAACGCATCCGAACACTTTTG
ATGAAAACTCTACTTGTGGTTCGGGACTGACACTAAATCTCTTGacaaat
acaaacaaaattacCAAAACATTACTATTGGATGTCGTGTAAGAATTTCC
CTTTAGTCAATTTGAGTTTCTGCCAAGTACCCATTACATCAGTAAACAAT
GTTTGGCAACTTTATActttatacaaaaaattcaaagatacTTAGTTTGG
TATAAATGCTAGTTGGGATGAAATATTTAGGCTCGTAGCTGGTGATCCCT
GGTATTAGACCTTATCAAATAAGGCAAGATCTGATATATCAACGATGAGT
CATAAGTCttaaacaattttcattttataggtTGTTTCTGACATGGTGAA
AAAGCTGGAAATTGACGAACGAAAATACAAACTTGGCCTCAGTCAGGTAT
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020558-exon-sc0000358-1491911889:143865..144331 | TCONS_00020558-exon-sc0000358-1491911889:143865..144331 | Clytia hemisphaerica | exon |
| TCONS_00020558-exon-sc0000358-1510915933:143865..144331 | TCONS_00020558-exon-sc0000358-1510915933:143865..144331 | Clytia hemisphaerica | exon |
| TCONS_00020558-exon-sc0000358-1575043694:143865..144331 | TCONS_00020558-exon-sc0000358-1575043694:143865..144331 | Clytia hemisphaerica | exon |
| TCONS_00020558-exon-sc0000358-1491911889:147229..147329 | TCONS_00020558-exon-sc0000358-1491911889:147229..147329 | Clytia hemisphaerica | exon |
| TCONS_00020558-exon-sc0000358-1510915933:147229..147329 | TCONS_00020558-exon-sc0000358-1510915933:147229..147329 | Clytia hemisphaerica | exon |
| TCONS_00020558-exon-sc0000358-1575043694:147229..147329 | TCONS_00020558-exon-sc0000358-1575043694:147229..147329 | Clytia hemisphaerica | exon |
| TCONS_00020558-exon-sc0000358-1491911889:150095..150166 | TCONS_00020558-exon-sc0000358-1491911889:150095..150166 | Clytia hemisphaerica | exon |
| TCONS_00020558-exon-sc0000358-1510915933:150095..150166 | TCONS_00020558-exon-sc0000358-1510915933:150095..150166 | Clytia hemisphaerica | exon |
| TCONS_00020558-exon-sc0000358-1575043694:150095..150166 | TCONS_00020558-exon-sc0000358-1575043694:150095..150166 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000358 | supercontig | sc0000358:143865..150166 + |
Blast
The following BLAST results are available for this feature:
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