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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020566 ID=TCONS_00020566|Name=TCONS_00020566|organism=Clytia hemisphaerica|type=transcript|length=1413bp
TACGAATCAGTGGCTTGCCAATTAGAATGTGGAGAATTTGTGCTGCGCAA
AAATATACAAAACCATATAGATACAGTTTGTCCTTGTGTATCTCCCTGTG
AATATCAAGACTTTGGATGCACGTTTAAGGGAACAAAGGAATCACTCCAA
AACCACATGGCAAAAAATGTGACCACTCACATATCACTAGAAATGAAGCT
AGAATTACAAAAAGTGAAAGATGAATTTAACAAACAGTTGCGAGCTAAAG
ACCAGGTAATGGTTCGAGTAAAGAAAGAGCTGGATAAAATGAAATCGACA
AATGAAGAGCTCATAGAAGATTTGCAAGCAAAGGGTAAACAAATTGGCTT
TCTAACAGAAAAGCTAAAAATCATTgacgaaattgaaaatgaaaccaaAC
GCAACAAAGACGATATTGAGACTAACAAGGAGAAGTTTAACAAAGATTTA
GCGACCACTAAAAAGGAATTGGCTCGAATAGATAAACAAATCGCTACCAA
GTCGCCAGACTGTAACTTGCTTGAGGAGATCGGAGCTAAAGCGAATATAG
ATAACCTGGAGTCTCTAGTGACtcatgaaaaattcaaaagtttggaAAGA
CAACTTGCACAACAGGACAAATTGACACTTGAAATTCTACTAACTCCAAA
ATGTCCTTTCCTTTGGTTTATCGataatttcaaagaaatattcaatataa
caTTGGGTCGAAAGGGTACTTTGTATTCACCTCCATTATTTACAGAAAAG
GGATATCATGGGCgtttaaaagtatatataaagGATTCACCACAAGGCAA
GGCAGACCAGATATCTGTTTACTTTGACAATTTGAAAGGACCTTATGATG
AAATGTTAGAATGGCCGATGCCTTTTACATCACTGAACTTTACTCTTTTT
ATCAACGGGAAGGAAGTTTCGAAAGCTTCGTCGAAGAGTGTTGAAAGATA
TAAAACTTGGACAGAACATTTCACTCGTCCAATCAATATTAAAGGTCGAG
CTTTAGGACGACCTGCCTTTCACAAGACCTTGATAGAGAATCTAACTGAT
AAAGATATTGTTGCAATCAAATTTCATACCGAATGATAGATTCTTACTCC
GTATATATCCACATAAAATACATAAACggcataattttttgaaaatcatc
aaGTGTGATTAGTACCAGCGAAAAGAGCGCACAAAAcatctttttatata
ttttcctaTCGAAAGTTACAAGGGTCTGTAATTTGCTGAGCTGATGACGA
CAATTAGAACATTGTACATACAACACcagaattttttactttttttagat
GGAAGAATTCGAGAAGCTTGGAATTGTTAAATACTATTGTGGGCTTTATG
CTTCAGAATATTTTTATGACAGGGTGAACCCTGCTATTACATACTTCAGA
ATATTTTCATGAC Run BLAST on NCBI protein sequence of TCONS_00020566-protein >TCONS_00020566-protein ID=TCONS_00020566-protein|Name=TCONS_00020566-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
YESVACQLECGEFVLRKNIQNHIDTVCPCVSPCEYQDFGCTFKGTKESLQ
NHMAKNVTTHISLEMKLELQKVKDEFNKQLRAKDQVMVRVKKELDKMKST
NEELIEDLQAKGKQIGFLTEKLKIIDEIENETKRNKDDIETNKEKFNKDL
ATTKKELARIDKQIATKSPDCNLLEEIGAKANIDNLESLVTHEKFKSLER
QLAQQDKLTLEILLTPKCPFLWFIDNFKEIFNITLGRKGTLYSPPLFTEK
GYHGRLKVYIKDSPQGKADQISVYFDNLKGPYDEMLEWPMPFTSLNFTLF
INGKEVSKASSKSVERYKTWTEHFTRPINIKGRALGRPAFHKTLIENLTD
KDIVAIKFHTE Run BLAST on NCBI transcript from alignment at sc0000358:89812..91591- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020566 ID=TCONS_00020566|Name=TCONS_00020566|organism=Clytia hemisphaerica|type=transcript|length=1780bp|location=Sequence derived from alignment at sc0000358:89812..91591- (Clytia hemisphaerica)
TACGAATCAGTGGCTTGCCAATTAGAATGTGGAGAATTTGTGCTGCGCAA
AAATGTAAGTAGATCTAAGAGGGTTTTTCAAAGATGAATAAAATGTGTGA
ACTGCCAATTTTTTTGGAACAAACTTAAAAAAAAGTAAATAGGACCAGTG
TTCTTGTTTATCTTTGTAGCAAAGTAAATTCTGTTGAACGATTTCTCATG
TTCTCAGAGATGAAACCTTAACAGAAATTAGCCGAACATCTCGTCCAAAA
TCAATCCTTTTTCCAGCCGGATACTAGATCAATTCAAAGTTTTTAATTAA
ATTCTTTTTACTTTATCCAACAGATACAAAACCATATAGATACAGTTTGT
CCTTGTGTATCTCCCTGTGAATATCAAGACTTTGGATGCACGTTTAAGGT
AACTTTCTTTTCATGATTTGTACAAGATATTTACAGCAGAGCCTTCATAA
CTTGAATCGCAAGTATGAATGTTATGCAACTGCTTTTATTTTTCAGGGAA
CAAAGGAATCACTCCAAAACCACATGGCAAAAAATGTGACCACTCACATA
TCACTAGAAATGAAGCTAGAATTACAAAAAGTGAAAGATGAATTTAACAA
ACAGTTGCGAGCTAAAGACCAGGTAATGGTTCGAGTAAAGAAAGAGCTGG
ATAAAATGAAATCGACAAATGAAGAGCTCATAGAAGATTTGCAAGCAAAG
GGTAAACAAATTGGCTTTCTAACAGAAAAGCTAAAAATCATTGACGAAAT
TGAAAATGAAACCAAACGCAACAAAGACGATATTGAGACTAACAAGGAGA
AGTTTAACAAAGATTTAGCGACCACTAAAAAGGAATTGGCTCGAATAGAT
AAACAAATCGCTACCAAGTCGCCAGACTGTAACTTGCTTGAGGAGATCGG
AGCTAAAGCGAATATAGATAACCTGGAGTCTCTAGTGACTCATGAAAAAT
TCAAAAGTTTGGAAAGACAACTTGCACAACAGGACAAATTGACACTTGAA
ATTCTACTAACTCCAAAATGTCCTTTCCTTTGGTTTATCGATAATTTCAA
AGAAATATTCAATATAACATTGGGTCGAAAGGGTACTTTGTATTCACCTC
CATTATTTACAGAAAAGGGATATCATGGGCGTTTAAAAGTATATATAAAG
GATTCACCACAAGGCAAGGCAGACCAGATATCTGTTTACTTTGACAATTT
GAAAGGACCTTATGATGAAATGTTAGAATGGCCGATGCCTTTTACATCAC
TGAACTTTACTCTTTTTATCAACGGGAAGGAAGTTTCGAAAGCTTCGTCG
AAGAGTGTTGAAAGATATAAAACTTGGACAGAACATTTCACTCGTCCAAT
CAATATTAAAGGTCGAGCTTTAGGACGACCTGCCTTTCACAAGACCTTGA
TAGAGAATCTAACTGATAAAGATATTGTTGCAATCAAATTTCATACCGAA
TGATAGATTCTTACTCCGTATATATCCACATAAAATACATAAACGGCATA
ATTTTTTGAAAATCATCAAGTGTGATTAGTACCAGCGAAAAGAGCGCACA
AAACATCTTTTTATATATTTTCCTATCGAAAGTTACAAGGGTCTGTAATT
TGCTGAGCTGATGACGACAATTAGAACATTGTACATACAACACCAGAATT
TTTTACTTTTTTTAGATGGAAGAATTCGAGAAGCTTGGAATTGTTAAATA
CTATTGTGGGCTTTATGCTTCAGAATATTTTTATGACAGGGTGAACCCTG
CTATTACATACTTCAGAATATTTTCATGAC Coding sequence (CDS) from alignment at sc0000358:89812..91591- >TCONS_00020566 ID=TCONS_00020566|Name=TCONS_00020566|organism=Clytia hemisphaerica|type=CDS|length=3258bp|location=Sequence derived from alignment at sc0000358:89812..91591- (Clytia hemisphaerica)
GGAACAAAGGAATCACTCCAAAACCACATGGCAAAAAATGTGACCACTCA
CATATCACTAGAAATGAAGCTAGAATTACAAAAAGTGAAAGATGAATTTA
ACAAACAGTTGCGAGCTAAAGACCAGGTAATGGTTCGAGTAAAGAAAGAG
CTGGATAAAATGAAATCGACAAATGAAGAGCTCATAGAAGATTTGCAAGC
AAAGGGTAAACAAATTGGCTTTCTAACAGAAAAGCTAAAAATCATTGACG
AAATTGAAAATGAAACCAAACGCAACAAAGACGATATTGAGACTAACAAG
GAGAAGTTTAACAAAGATTTAGCGACCACTAAAAAGGAATTGGCTCGAAT
AGATAAACAAATCGCTACCAAGTCGCCAGACTGTAACTTGCTTGAGGAGA
TCGGAGCTAAAGCGAATATAGATAACCTGGAGTCTCTAGTGACTCATGAA
AAATTCAAAAGTTTGGAAAGACAACTTGCACAACAGGACAAATTGACACT
TGAAATTCTACTAACTCCAAAATGTCCTTTCCTTTGGTTTATCGATAATT
TCAAAGAAATATTCAATATAACATTGGGTCGAAAGGGTACTTTGTATTCA
CCTCCATTATTTACAGAAAAGGGATATCATGGGCGTTTAAAAGTATATAT
AAAGGATTCACCACAAGGCAAGGCAGACCAGATATCTGTTTACTTTGACA
ATTTGAAAGGACCTTATGATGAAATGTTAGAATGGCCGATGCCTTTTACA
TCACTGAACTTTACTCTTTTTATCAACGGGAAGGAAGTTTCGAAAGCTTC
GTCGAAGAGTGTTGAAAGATATAAAACTTGGACAGAACATTTCACTCGTC
CAATCAATATTAAAGGTCGAGCTTTAGGACGACCTGCCTTTCACAAGACC
TTGATAGAGAATCTAACTGATAAAGATATTGTTGCAATCAAATTTCATAC
CGAATGAATACAAAACCATATAGATACAGTTTGTCCTTGTGTATCTCCCT
GTGAATATCAAGACTTTGGATGCACGTTTAAGTACGAATCAGTGGCTTGC
CAATTAGAATGTGGAGAATTTGTGCTGCGCAAAAATGGAACAAAGGAATC
ACTCCAAAACCACATGGCAAAAAATGTGACCACTCACATATCACTAGAAA
TGAAGCTAGAATTACAAAAAGTGAAAGATGAATTTAACAAACAGTTGCGA
GCTAAAGACCAGGTAATGGTTCGAGTAAAGAAAGAGCTGGATAAAATGAA
ATCGACAAATGAAGAGCTCATAGAAGATTTGCAAGCAAAGGGTAAACAAA
TTGGCTTTCTAACAGAAAAGCTAAAAATCATTGACGAAATTGAAAATGAA
ACCAAACGCAACAAAGACGATATTGAGACTAACAAGGAGAAGTTTAACAA
AGATTTAGCGACCACTAAAAAGGAATTGGCTCGAATAGATAAACAAATCG
CTACCAAGTCGCCAGACTGTAACTTGCTTGAGGAGATCGGAGCTAAAGCG
AATATAGATAACCTGGAGTCTCTAGTGACTCATGAAAAATTCAAAAGTTT
GGAAAGACAACTTGCACAACAGGACAAATTGACACTTGAAATTCTACTAA
CTCCAAAATGTCCTTTCCTTTGGTTTATCGATAATTTCAAAGAAATATTC
AATATAACATTGGGTCGAAAGGGTACTTTGTATTCACCTCCATTATTTAC
AGAAAAGGGATATCATGGGCGTTTAAAAGTATATATAAAGGATTCACCAC
AAGGCAAGGCAGACCAGATATCTGTTTACTTTGACAATTTGAAAGGACCT
TATGATGAAATGTTAGAATGGCCGATGCCTTTTACATCACTGAACTTTAC
TCTTTTTATCAACGGGAAGGAAGTTTCGAAAGCTTCGTCGAAGAGTGTTG
AAAGATATAAAACTTGGACAGAACATTTCACTCGTCCAATCAATATTAAA
GGTCGAGCTTTAGGACGACCTGCCTTTCACAAGACCTTGATAGAGAATCT
AACTGATAAAGATATTGTTGCAATCAAATTTCATACCGAATGAATACAAA
ACCATATAGATACAGTTTGTCCTTGTGTATCTCCCTGTGAATATCAAGAC
TTTGGATGCACGTTTAAGTACGAATCAGTGGCTTGCCAATTAGAATGTGG
AGAATTTGTGCTGCGCAAAAATGGAACAAAGGAATCACTCCAAAACCACA
TGGCAAAAAATGTGACCACTCACATATCACTAGAAATGAAGCTAGAATTA
CAAAAAGTGAAAGATGAATTTAACAAACAGTTGCGAGCTAAAGACCAGGT
AATGGTTCGAGTAAAGAAAGAGCTGGATAAAATGAAATCGACAAATGAAG
AGCTCATAGAAGATTTGCAAGCAAAGGGTAAACAAATTGGCTTTCTAACA
GAAAAGCTAAAAATCATTGACGAAATTGAAAATGAAACCAAACGCAACAA
AGACGATATTGAGACTAACAAGGAGAAGTTTAACAAAGATTTAGCGACCA
CTAAAAAGGAATTGGCTCGAATAGATAAACAAATCGCTACCAAGTCGCCA
GACTGTAACTTGCTTGAGGAGATCGGAGCTAAAGCGAATATAGATAACCT
GGAGTCTCTAGTGACTCATGAAAAATTCAAAAGTTTGGAAAGACAACTTG
CACAACAGGACAAATTGACACTTGAAATTCTACTAACTCCAAAATGTCCT
TTCCTTTGGTTTATCGATAATTTCAAAGAAATATTCAATATAACATTGGG
TCGAAAGGGTACTTTGTATTCACCTCCATTATTTACAGAAAAGGGATATC
ATGGGCGTTTAAAAGTATATATAAAGGATTCACCACAAGGCAAGGCAGAC
CAGATATCTGTTTACTTTGACAATTTGAAAGGACCTTATGATGAAATGTT
AGAATGGCCGATGCCTTTTACATCACTGAACTTTACTCTTTTTATCAACG
GGAAGGAAGTTTCGAAAGCTTCGTCGAAGAGTGTTGAAAGATATAAAACT
TGGACAGAACATTTCACTCGTCCAATCAATATTAAAGGTCGAGCTTTAGG
ACGACCTGCCTTTCACAAGACCTTGATAGAGAATCTAACTGATAAAGATA
TTGTTGCAATCAAATTTCATACCGAATGAATACAAAACCATATAGATACA
GTTTGTCCTTGTGTATCTCCCTGTGAATATCAAGACTTTGGATGCACGTT
TAAGTACGAATCAGTGGCTTGCCAATTAGAATGTGGAGAATTTGTGCTGC
GCAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020566-exon-sc0000358-1575043694:91538..91591 | TCONS_00020566-exon-sc0000358-1575043694:91538..91591 | Clytia hemisphaerica | exon |
| TCONS_00020566-exon-sc0000358-1575043694:91194..91268 | TCONS_00020566-exon-sc0000358-1575043694:91194..91268 | Clytia hemisphaerica | exon |
| TCONS_00020566-exon-sc0000358-1575043694:89812..91095 | TCONS_00020566-exon-sc0000358-1575043694:89812..91095 | Clytia hemisphaerica | exon |
| TCONS_00020566-exon-sc0000358-1510915933:91538..91591 | TCONS_00020566-exon-sc0000358-1510915933:91538..91591 | Clytia hemisphaerica | exon |
| TCONS_00020566-exon-sc0000358-1510915933:91194..91268 | TCONS_00020566-exon-sc0000358-1510915933:91194..91268 | Clytia hemisphaerica | exon |
| TCONS_00020566-exon-sc0000358-1510915933:89812..91095 | TCONS_00020566-exon-sc0000358-1510915933:89812..91095 | Clytia hemisphaerica | exon |
| TCONS_00020566-exon-sc0000358-1491911889:91538..91591 | TCONS_00020566-exon-sc0000358-1491911889:91538..91591 | Clytia hemisphaerica | exon |
| TCONS_00020566-exon-sc0000358-1491911889:91194..91268 | TCONS_00020566-exon-sc0000358-1491911889:91194..91268 | Clytia hemisphaerica | exon |
| TCONS_00020566-exon-sc0000358-1491911889:89812..91095 | TCONS_00020566-exon-sc0000358-1491911889:89812..91095 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000358 | supercontig | sc0000358:89812..91591 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00020566 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 1.038e-17 Identity = 93/365 (25.48%), Postives = 161/365 (44.11%), Query Frame = 1
Query: 10 VACQLECG-EFVLRKNIQNHIDTVCPCVSPCEYQDFGCTFKGTKESLQNHMAKNVTTHI--------SLEMKLE-LQKVKDEFNKQLRAKDQVMVRVKKELDKMKS---TNEELIEDLQAKGKQIGFLTEKLKIIDEIENETKRNKDDIETNKEKFNKDLATTKKELARIDKQIATKSPDCNLLEEIGAKANIDNLESLVTHEKFKSL-ERQLAQQDKLTLEILLTPK--CPFLWFIDNFKEIFN-ITLGRKGTLYSPPLFTEK-GYHGRLKVYIKDSPQGKADQISVYFDNLKGPYDEMLEWPMPFTSLNFTLFINGXXXXXXXXXXXXRYKTWTEHFTRPINIKGRALGRPAF-HKTLIENLT 1047
V+C +C + +LR + H+ S C ++ +GC F+GT + ++ H A + H+ SLE K+ LQ E NK +++ + + E+++ K NE I LQ + I EKLK +D+ ++N ++ ++ K + L EL +DK + + LLE L H++ S+ + +LA D L ++L T +W I ++K +G+ +LYS P +T GY +VY+ GK +S++F ++G YD +L WP TL + + S+ + + F +P A G P F +T++EN T
Sbjct: 202 VSCPHKCSVQTLLRSELSAHLSECVNAPSTCSFKRYGCVFQGTNQQIKAHEASSAVQHVNLLKEWSNSLEKKVSLLQNESVEKNKSIQSLHNQICSFEIEIERQKEMLRNNESKILHLQ---RVIDSQAEKLKELDKEIRPFRQNWEEADSMKSSV-ESLQNRVTELESVDKSAGQVARNTGLLE-----------SQLSRHDQMLSVHDIRLADMD-LRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPF---KQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGT 547
The following BLAST results are available for this feature:
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