TCONS_00020568 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020568
Unique NameTCONS_00020568
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020568 ID=TCONS_00020568|Name=TCONS_00020568|organism=Clytia hemisphaerica|type=transcript|length=1324bp
CGGAACAAAGAGcaataatacacgtttttctaCAAGCATAACGATTATAA
GCATATCcagtctcaaattttgaaaaaacttaagTATTGGCTTAACATAC
ATATGTTGAGCCTCAGTTTAcgaaatctcaaaaattaaatttactaTAAT
TACGAGactagagagagagagagaggatTCGAGACCATAAATTAATTaca
cgatatcatactccatcATGTAAATCCAAACtaaaaccccccccccaaaa
aaaaagttacatCATTACATAAGCATGGGAATAGCATAATAAGGCTCACG
AAAATTTACcctgtgcttataaaaaacgtgaatACTcgataataacaata
atattaTCTTCAATTATACTTCGTAATACTTCGTAAAACAAAGCAAATTT
GGGCATTATTACCCGTATAGTTATTTGTGTAAAGCACCGGCAGGTCATCT
AAACGCGGTAAATATGATATAAGGGATAATTATTACCAAACCAATTACAG
TATGCAAAAGACCAATACAATCTTCATAATGCCAAAACCTTTCTTTACCC
TCTGCCATCTTTACGAGCCCATGAGAGCAACTGTGATTGGGCATACATTC
AATTATAGATTTTGTTACAAGTTTTTGATCGACTTGAGCCTTTGTTTAAT
CACAATTCAACAATTCAAAAGTCTTCTACACGCAGTGTTGACGTAAAAAA
GTTTACGATAGAAGCTTGAGCTAAAATTTACGAGAGAATTCAACCAAGTT
ATCAAAAGTTTACGATAACTTCTTTTCAAGTTTTGGAGTCTCATATTACA
TAACgtgaatttttttccaagtttacAGAGGCTTTCTACTGTATTCACAA
GCTCTGATTCCCGTCTTTAGCATCTCTTCGAAGTTTGCGATAGCTTCTTT
CAAAGTTTTCGAATCTCCTACTACAtaacatgaatttttttaaagtttac
aAGGGCTTCCTGTGTTTACGAGCTTTGCTTCCTGTGTTTACGAGCTTTGA
TTCCCATCTTTAGTGTCGCCTGCATCTCGTAACCGATGAAAAGCATGTTC
AAGCATCGAAGGTTCTACTCCTTTCCCTACTAATTGTTGCTTCACTGTCT
CATCTGGAAATAGAGAATAGTTTCATAGTTTAACACAATCTCGTATCAAG
AGCCACCCGCatcactttttgttttactgAGCGTGATACAAGCGCTCTAG
GAAAAATCATGAGCGCTTTTAGAATCATTACCGTACTTACTTACCGATAA
CAACCCAAAAgttcccttaacaatcaaaagGGCCAAAATCGCAAGCTAGA
TTTTAACAGTAATGGAGGATAAAC
Run BLAST on NCBI

transcript from alignment at sc0000358:113350..114729-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020568 ID=TCONS_00020568|Name=TCONS_00020568|organism=Clytia hemisphaerica|type=transcript|length=1380bp|location=Sequence derived from alignment at sc0000358:113350..114729- (Clytia hemisphaerica)
CGGAACAAAGAGCAATAATACACGTTTTTCTACAAGCATAACGATTATAA
GCATATCCAGTCTCAAATTTTGAAAAAACTTAAGTATTGGCTTAACATAC
ATATGTTGAGCCTCAGTTTACGAAATCTCAAAAATTAAATTTACTATAAT
TACGAGACTAGAGAGAGAGAGAGAGGATTCGAGACCATAAATTAATTACA
CGATATCATACTCCATCATGTAAATCCAAACTAAAACCCCCCCCCCAAAA
AAAAAGTTACATCATTACATAAGCATGGGAATAGCATAATAAGGCTCACG
AAAATTTACCCTGTGCTTATAAAAAACGTGAATACTCGATAATAACAATA
ATATTATCTTCAATTATACTTCGTAATACTTCGTAAAACAAAGCAAATTT
GGGCATTATTACCCGTATAGTTATTTGTGTAAAGCACCGGCAGGTCATCT
AAACGCGGTAAATATGATATAAGGGATAATTATTACCAAACCAATTACAG
TATGCAAAAGACCAATACAATCTTCATAATGCCAAAACCTTTCTTTACCC
TCTGCCATCTTTACGAGCCCATGAGAGCAACTGTGATTGGGCATACATTC
AATNTCTCTGCCGTCTTTACGAGCCCATGAGAGCAACTGTGATTGGGCAT
ACATTCAATTATAGATTTTGTTACAAGTTTTTGATCGACTTGAGCCTTTG
TTTAATCACAATTCAACAATTCAAAAGTCTTCTACACGCAGTGTTGACGT
AAAAAAGTTTACGATAGAAGCTTGAGCTAAAATTTACGAGAGAATTCAAC
CAAGTTATCAAAAGTTTACGATAACTTCTTTTCAAGTTTTGGAGTCTCAT
ATTACATAACGTGAATTTTTTTCCAAGTTTACAGAGGCTTTCTACTGTAT
TCACAAGCTCTGATTCCCGTCTTTAGCATCTCTTCGAAGTTTGCGATAGC
TTCTTTCAAAGTTTTCGAATCTCCTACTACATAACATGAATTTTTTTAAA
GTTTACAAGGGCTTCCTGTGTTTACGAGCTTTGCTTCCTGTGTTTACGAG
CTTTGATTCCCATCTTTAGTGTCGCCTGCATCTCGTAACCGATGAAAAGC
ATGTTCAAGCATCGAAGGTTCTACTCCTTTCCCTACTAATTGTTGCTTCA
CTGTCTCATCTGGAAATAGAGAATAGTTTCATAGTTTAACACAATCTCGT
ATCAAGAGCCACCCGCATCACTTTTTGTTTTACTGAGCGTGATACAAGCG
CTCTAGGAAAAATCATGAGCGCTTTTAGAATCATTACCGTACTTACTTAC
CGATAACAACCCAAAAGTTCCCTTAACAATCAAAAGGGCCAAAATCGCAA
GCTAGATTTTAACAGTAATGGAGGATAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011545XLOC_011545Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020568-exon-sc0000358-1575043694:114134..114729TCONS_00020568-exon-sc0000358-1575043694:114134..114729Clytia hemisphaericaexon
TCONS_00020568-exon-sc0000358-1575043694:113350..114077TCONS_00020568-exon-sc0000358-1575043694:113350..114077Clytia hemisphaericaexon
TCONS_00020568-exon-sc0000358-1510915933:114134..114729TCONS_00020568-exon-sc0000358-1510915933:114134..114729Clytia hemisphaericaexon
TCONS_00020568-exon-sc0000358-1510915933:113350..114077TCONS_00020568-exon-sc0000358-1510915933:113350..114077Clytia hemisphaericaexon
TCONS_00020568-exon-sc0000358-1491911889:114134..114729TCONS_00020568-exon-sc0000358-1491911889:114134..114729Clytia hemisphaericaexon
TCONS_00020568-exon-sc0000358-1491911889:113350..114077TCONS_00020568-exon-sc0000358-1491911889:113350..114077Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000358supercontigsc0000358:113350..114729 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.139978	0	0	0.171207	0	0.126084	0	0	0	0.186573	0	0.129607	0.0518685	0	0	0	0	0	0	0	0	0	2.13554e-06	0	0	0.085302	0.151555	0.340824	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020568 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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