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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020572 ID=TCONS_00020572|Name=TCONS_00020572|organism=Clytia hemisphaerica|type=transcript|length=1194bp
AGAATAACTACTCGTGTTAACGAGAAAAAAACTAAcaataaaattaagaa
aatttggCTCTGGTGACAAGATGGCGGCAACTTCACTTGAAAAGTTACAA
ACAACACGACAGAAGTTGAAAGAAATCGAATCACAACAAAACATTCTGCA
AACAGACATCTTAAAAGTTTAAAGATTACCTCCATTGATGACGAATCCAA
AGAAGTAGCAAGGAAAGCAACACAGACTGATGTCATTCAAAAGAAAGATG
TTTTGATGAACCCTTTCCATacaAAGCAAGCAGTCAATGATAAATGCAAA
AGCAAATCAGAACTGGATATAGCTAAAAGAACCCCAACAGAAAGAGTTTC
TGAAACCCCATATCGACTAAATGATGTGgctgaaatcaaaacaattcgAT
TATGGGAAGGAGATGAATTTTGTCAAAGTAGAGATTTATTGCCTGACAAT
TTCTGGGAAGTGGGACTTGAAACTGTTGACCTTTATGAGAGATTAGTCAG
TGGGGAAGATAACATGACTTGGTAGTTGTTCAAGGTAGCTTActgttttt
tgcatttttttaatacATCCACTCTACCATTACCTTGCTTTGCTCTATAG
GAGTGTGGCTGATGTGTTGATCTAACCTGCTTGTTCAGTCAAAACATATA
AAGTGTTCCTTTTGTGCTCAAAAGCTCATGAAAAGTCTGGATGAAAAAAC
TGCGAATCGCTTTTCACTGACCTGGGTAGATTCCCTTACGAAGCTCGCGT
ATTAACAAGATTCTGCTCGGAATAGCCAATGATAGCTATGAAACTGCGCA
CAACGAAACACTTAGCTTTCTGACAAGACAATTTCTAATTCCCACCTAGC
taggggtccacttaaagcttttttatagactggatggcgtgattatgtgg
cccggtagtatatggtaacaTGCTTTCACTTAGGTGGGCtataaaacagt
ccgccagattttcgatgttttttgccaggttaaaaaaagaatgaagcaaa
gattttatttaaaacCAAGGGACTAATATCCGAACAGCCCATGATAGCCC
ACTATGAAAACTGCACACTAAGAAACACTTCTGTTTCTGATAAGACAATT
TCCAATTCCCGCCCTATATAGAGACCTCtaataaagattttaaatttaaa
gaaatgaATTCTgtaaatacaattcaatatcTTGTGCAAATATA Run BLAST on NCBI transcript from alignment at sc0000358:232720..239050- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020572 ID=TCONS_00020572|Name=TCONS_00020572|organism=Clytia hemisphaerica|type=transcript|length=6331bp|location=Sequence derived from alignment at sc0000358:232720..239050- (Clytia hemisphaerica)
AGAATAACTACTCGTGTTAACGAGAAAAAAACTAACAATAAAATTAAGAA
AATTTGGCTCTGGTGACAAGATGGCGGCAACTTCACTTGAAAAGTTACAA
ACAACACGACAGAAGTTGAAAGAAATCGAATCACAACAAAACATTCTGCA
AACAGACATCTTAAAAGGTAACATTGGCTTACTTTTACCATTCATTCAGT
TGATGGTTGTATGGATTTTTTTATATTCTTCACTTCACTAAAATCTGATG
GACTATCTGTCTTTCGGTGTATGTCTTTAAACTTTTTGGAAAACCTGGAG
ATATCAAAATCGGTCGAGCTTGGCTGAAATTTGGCAAACTTGTAACTTGG
CGTAAAAAACTTGCGATGTTTTTCAAAAATCTTTTGGACCTGTGGCAAAA
TTTTCACTATTGCTACAATTGGCTCCTGACCAGTGGGAATAAGCACCGAA
GTGGAGTGGTTCTTTAAAACCTGTATTTTCTCTCATATAGTTTCATCCAA
AACTGAGTTAGAAGCTTGGAGAAAGAAGTTCACTGTACAGCAATCAACAT
TAGCAGAAGTCAATAAAGATTTATCAAATGTGAAGAAAAATATCAGTTCA
CTGAGAGACTCTCAACTATCTTCACAATCGCAAAGTCAAAGCCAGTCTGG
TATCTCAAGTGAGAATAAAAAGTTGATGAGACAAGCCAAAGAGTTGTTAT
CTCAACAAAAAGTTTTGGTTAAACTACTTAAATGTCAAAAAGAATTGAGT
GGAAAGTTTCAAAGTTTAAGGTAGGGCAACTGTTATGAACTTTTGATACA
TTATATTTTTGCTGAAGATTGATCGTTTTTCGTTATTTTTCAGAAATTTA
TTAACTAGAGAATTGCTCTTACATGTTCGTTCTTAGCTTATCAAAATCTT
TGTTATTTGTAAATGTGTGAAGACCCTTAGATTTGGTAGAATGAGACCCT
CAGATCAGGTAAAATGAGTAAGTGAAAACTAAATTTGGAGATTATTTGTA
GAAACTATACTGAGAATTCGTTACAAGAAGGCTATTTTACTAAAACCCTG
ACGAAACACGCGTTTAATCATGGATTTTGCCACCGAAGATCGTCTACCTC
TTTTTTCCAAGTCGTGAATTTTGGCTGAAGCTTGGGTGTTGTTGTTGTGT
CACAATTTCCTTGTTCAATTCTTTAGCGCCTGCGTTTTTTGATTTGTCCG
TGCCTAAAATACCGCAACTTTTTAAACTGGTTTTCTTTCTAAATACCGCA
CGAGTCGTGCAAAAAAAACTGAAGAAGAATTATCTTGCATAATTTCAAGA
TCGCTTTCTTGTTGTCATAATAATCCAAATCGTATAATTCTTAATTCATC
ATTTTCTGAATTCTCCAGTTTAAAGATTACCTCCATTGATGACGAATCCA
AAGAAGTAGCAAGGAAAGCAACACAGACTGATGTCATTCAAAAGAAAGAT
GTTTTGATGAACCCTTTCCATGTAAGAGGATTCATGTCTAATTCATTATA
TACAATAAACCGTCCCCTTCCCCTCCCCCCCCCAAATATTATCGGAAGGA
GGTCCAGCTGTTCACCGCTGCCGCAACCCATGTTATTCTTGTGATTTATG
TCTGTGTATTTCGCTGCCATCGAGGCAAAAGATCCAATCTCGATTGGACC
TTATACTTCAATAGCAGCGATTTGCATCTACCCTAATGGCACTTGGCCGC
ACGAAAATTAAACGGTGCGTGAATTTTCAACAGTTTACTACTGGAAAAAT
GATATTTTCATGTAAGTTGAAGCATTAATATAGCCATTCTAACAAATTTT
GGCGTTATTTACGGCTCTTATTGGCGTAAGCCCAAAATCAGGCTGTGGCG
TAATAAGGGCCGGCGTAAAAGGGGCCGGCGTTAAATTAGCGCCGGCGTAA
AAAGGGCCGATAAGGTATACAGAATTTGTCTTTCATTTTACCAAGAAGTA
CGTGTTATTTACTTCGACTCGTGGACCCCCACTCATGATTAAAGTATTTA
TTTCTACACACTTTGGAGAGGAAAATTAAAAGATTCTATTATAGATAATG
TCTTATAGTACACGAGCATAAAGAAGAAAGTGCGTCAAAGGATTAATTTT
AGTAATATATTAAATTATTAAAATAAGTAAGGAACGTCTGCTATGAAAAT
CTTTTAGAGCATTATTCTTAGATTTCCTCTGGGAGTTGGACTTGGAGTTA
GGACCANATATTAAATTATTAAAATAAGTAAGGAACGTCTGCTATGAAAC
TCTTTTAGAGTATTATTCTTAGATTTCCTCTGGGAGTTGGACTTGGAGTT
AGGACCACCAGGGTCAATTCAATTTTACAAATATTTTTGTTTTTTTAGAC
AAAGCAAGCAGTCAATGATAAATGCAAAAGCAAATCAGAACTGGATATAG
CTAAAAGAACCCCAACAGAAAGAGTTTCTGAAACCCCATATCGGTAAGCT
TTGGAATTAGCAAAAGGAAGTCAGTCCTGTCTCGGTTATCCGAGTCAGTG
GTGGATAGAAATGAAAGGAGTCACACGTTTTTTTGTAAGAACAAACTATA
TAAGAACATAAAGCTTCGATGACCAAAATATTAACAACAAGTTAAGAACA
TTTTAAGGCTTTGGGGACTTTAAAGCAGTGGCGTTGTGGCAGGGGGCCGG
GGGCGAACGCCCCAATATTAGAAATCATACTTCATGCACCTTAAATTGCG
CCCTTAGACCAATTTTACTGAGATAATTGTAAATTACTTGCAATCTTTTT
CGTCCGCTTCGCTCGCAATAAAGTTAATTGGTAACTCCTTTGCAATCTAG
CAAATTTATAATTAAATGAAAATCTAACCTCAGGCAAATTGGGAGGTCGT
CAGTAGTCCGACACTTTCTAGTCCGACAGTAAAATGTCCGACGTTGGATT
TGACGAATGCGTCAGTATTCCGACAACAATTTTGTCCGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGCAAAAAGGGACTCTTAAAGGCGGTGCATTCTTTTTGTTATAAATTATC
TTTACGCAAATTTGATTGTTCCTTTGTTTCTAATTATGTCAAAATGCCGC
CAAAAAGAACATATTAATATTATCTCAGTGAAAAACCCTTATTCAACATC
GACACTCTAAAATCTTTCGTTTTCGGACAAAAGTGACGTCAGAAAAAAGA
CTTTTAAATTGTAAAAATATCTTATAGATTCGGACTATTTTACTGTCGGA
CTAGAAAGTGTCGGACTAGTGACATGCACCCGGCAAATTAAGGCCTGTCC
AGATTTTTCAAATTTACCTCAATTTTTTATCACCGTTTCCACTTGTCATA
GCATATCACTTCATACGTCGAAACATAGAGGTATAAAGAAAGACAGGAGA
TGAATTTGTCGGTAATTGGTCGTTAAAGTCTTTTGATTTCTTTTATGTAA
TAAATCAAAAGAAATTCTAGGCTTGCCCGATGAAATACGACTTTTTAGTA
GAACTCAAGTTTGCTTTGAACATTCTTACTATCAGCATCGAAGATTTCCA
GCCTTCTAATATACAAGAATAAAATAAAATTTAGCTCCACGAAATAAGTT
TGCGTTCAATTTTGTCATCCATTAAATTTTGTTTTGAAAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTGATGAAGGATTGCAAAGTTTACAGGCCCTTTTTTAAT
CCAAATATTTTCTTACACCAATGTCAGAAACAATGAATCTCGTCCCATCT
TATTTCCAACATTTAAGTTAGCCAATAAGATTTTACCTATCAACAAAAGA
GCTCATCAAAAATGCACGATATATGAGATTATGAGCATGCATACCTCGTA
ATATTTTTAATCGTAGGGCGAGCATGGTTACAATAGCATACTTCTCCTGT
TTCTTTATACCTCCATGATCGAAAGAAGCGTATTGGAGTGTAGATCACTG
GAATAGCTGTGCCATAATTAATTTTTTCACCCAAAAATTAATATCAGGCA
AAAACCAAAAAATGCCGACGTCAGCAAAACTTGTTTTTGAATAACTCCAG
CTTGGCTTATGGTATAAACATGAAATTTGGACAAAAGTTGCATATCATTA
ATAGGAACAGTTTTGCATAATTTCTTTTTCAAAATTTTGCTGACTTCACC
AGAAATTTTGTTTTTCAAAATGGACATGCCTTAATTTGCCTGAGATTGCG
CCCCAAGACCAATTTGCTGACAACAATATTGACATCATAAAACATCAATT
TCTTCGCTCGCCTCGCTCGCATTTTACATTGTTTCTTTAAGTTTNAGCAC
GCGGAATGACATTTTAATGATGCAAAAAATCATTAATTATTTTATCATTC
TTACGCGGATCATTTCAATAGGATACTGGTCTATCTATTTTATTAGGTCG
TTGCTCTAAAGCACCCAATTTCTTAGGAAAATGGACAAAAATGCTCACAA
AATGGTGATATGTTAAGAACAGTTTGGCTTAAAACTAAAAAAGTTATGAA
CATCCTAAGGCTTCAAAAGTTGTGGATGTTCTTATAAAAATAAACTTGTA
GGGAATATTTAATGTCGGCATGACTGGCATGAAAATCGTTTATTGTATTC
AGGACCTTAGAGTATAAACCTTACTCCGTATCTCAAAATTTCCAAAATTG
GAGCAAATTTGTGTTCCCTTTGCGTTTTCGAGTATAGAGACTCCACTGTA
TATAATTTAATCAGTAAAATGGAGAGTAAAATTCCTTGACATTCTGTGTC
TGTTCTATTTTTTAGACTAAATGATGTGGCTGAAATCAAAACAATTCGAT
TATGGGAAGGAGATGNGGGGCGCCATTTAAAAAAAATGACTTTGGCCCCT
CCAGAAAAATTTTCCCGCAACACCACTGCTCTAAACAACGACTTAATAAA
ATAGATAGACCAAGAACTTCATACAATGGCTCTTAAAAATCTTTTGTTTT
CTATTCATTTTGTATTCTTTCATCTTGCCGTCTNGTCTGTTCTATTTTTT
AGACTAAATGATGTGGCTGAAATCAAAACAATTCGATTATGGGAAGGAGA
TGAATTTTGTCAAAGTAGAGATTTATTGCCTGACAATTTCTGGGAAGTGG
GACTTGAAACTGTTGACCTTTATGAGAGATTAGTCAGTGGGGAAGATAAC
ATGACTTGGTAGTTGTTCAAGGTAGCTTACTGTTTTTTGCATTTTTTTAA
TACATCCACTCTACCATTACCTTGCTTTGCTCTATAGGAGTGTGGCTGAT
GTGTTGATCTAACCTGCTTGTTCAGTCAAAACATATAAAGTGTTCCTTTT
GTGCTCAAAAGCTCATGAAAAGTCTGGATGAAAAAACTGCGAATCGCTTT
TCACTGACCTGGGTAGATTCCCTTACGAAGCTCGCGTATTAACAAGATTC
TGCTCGGAATAGCCAATGATAGCTATGAAACTGCGCACAACGAAACACTT
AGCTTTCTGACAAGACAATTTCTAATTCCCACCTAGCTAGGGGTCCACTT
AAAGCTTTTTTATAGACTGGATGGCGTGATTATGTGGCCCGGTAGTATAT
GGTAACATGCTTTCACTTAGGTGGGCTATAAAACAGTCCGCCAGATTTTC
GATGTTTTTTGCCAGGTTAAAAAAAGAATGAAGCAAAGATTTTATTTAAA
ACCAAGGGACTAATATCCGAACAGCCCATGATAGCCCACTATGAAAACTG
CACACTAAGAAACACTTCTGTTTCTGATAAGACAATTTCCAATTCCCGCC
CTATATAGAGACCTCTAATAAAGATTTTAAATTTAAAGAAATGAATTCTG
TAAATACAATTCAATATCTTGTGCAAATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020572-exon-sc0000358-1575043694:238884..239050 | TCONS_00020572-exon-sc0000358-1575043694:238884..239050 | Clytia hemisphaerica | exon |
| TCONS_00020572-exon-sc0000358-1575043694:237580..237682 | TCONS_00020572-exon-sc0000358-1575043694:237580..237682 | Clytia hemisphaerica | exon |
| TCONS_00020572-exon-sc0000358-1575043694:236608..236702 | TCONS_00020572-exon-sc0000358-1575043694:236608..236702 | Clytia hemisphaerica | exon |
| TCONS_00020572-exon-sc0000358-1575043694:232720..233548 | TCONS_00020572-exon-sc0000358-1575043694:232720..233548 | Clytia hemisphaerica | exon |
| TCONS_00020572-exon-sc0000358-1510915933:238884..239050 | TCONS_00020572-exon-sc0000358-1510915933:238884..239050 | Clytia hemisphaerica | exon |
| TCONS_00020572-exon-sc0000358-1510915933:237580..237682 | TCONS_00020572-exon-sc0000358-1510915933:237580..237682 | Clytia hemisphaerica | exon |
| TCONS_00020572-exon-sc0000358-1510915933:236608..236702 | TCONS_00020572-exon-sc0000358-1510915933:236608..236702 | Clytia hemisphaerica | exon |
| TCONS_00020572-exon-sc0000358-1510915933:232720..233548 | TCONS_00020572-exon-sc0000358-1510915933:232720..233548 | Clytia hemisphaerica | exon |
| TCONS_00020572-exon-sc0000358-1491911889:238884..239050 | TCONS_00020572-exon-sc0000358-1491911889:238884..239050 | Clytia hemisphaerica | exon |
| TCONS_00020572-exon-sc0000358-1491911889:237580..237682 | TCONS_00020572-exon-sc0000358-1491911889:237580..237682 | Clytia hemisphaerica | exon |
| TCONS_00020572-exon-sc0000358-1491911889:236608..236702 | TCONS_00020572-exon-sc0000358-1491911889:236608..236702 | Clytia hemisphaerica | exon |
| TCONS_00020572-exon-sc0000358-1491911889:232720..233548 | TCONS_00020572-exon-sc0000358-1491911889:232720..233548 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000358 | supercontig | sc0000358:232720..239050 - |
Blast
The following BLAST results are available for this feature:
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