TCONS_00020579 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020579
Unique NameTCONS_00020579
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020579 ID=TCONS_00020579|Name=TCONS_00020579|organism=Clytia hemisphaerica|type=transcript|length=291bp
NNATACTGAGATGATACGAGATTCGTGAACGGGTTAATAAAATCGAATAA
TCTCATGATACAACACACAGTACCAGAGGAACATAAATATGAATGTATAT
ATGTGCGACTATTTATTATTGTCAATAACTTATTACATATTTATCATTAC
TTTGTCAATTTATTACTTGACTTGTATTTACCGACCTTGCGTTACGAAGA
TAGTCCAAATGTCTCCAGAAATGACATGTGTCTACAATTTATTGTTTGAA
TCCTTTTGATAACTGATAAGGAGGAAAAGTTAAGATTGAGT
Run BLAST on NCBI

transcript from alignment at sc0000358:116281..116571

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020579 ID=TCONS_00020579|Name=TCONS_00020579|organism=Clytia hemisphaerica|type=transcript|length=291bp|location=Sequence derived from alignment at sc0000358:116281..116571 (Clytia hemisphaerica)
ACTCAATCTTAACTTTTCCTCCTTATCAGTTATCAAAAGGATTCAAACAA
TAAATTGTAGACACATGTCATTTCTGGAGACATTTGGACTATCTTCGTAA
CGCAAGGTCGGTAAATACAAGTCAAGTAATAAATTGACAAAGTAATGATA
AATATGTAATAAGTTATTGACAATAATAAATAGTCGCACATATATACATT
CATATTTATGTTCCTCTGGTACTGTGTGTTGTATCATGAGATTATTCGAT
TTTATTAACCCGTTCACGAATCTCGTATCATCTCAGTATNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011552XLOC_011552Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020579-exon-sc0000358-1491911889:116281..116571TCONS_00020579-exon-sc0000358-1491911889:116281..116571Clytia hemisphaericaexon
TCONS_00020579-exon-sc0000358-1510915933:116281..116571TCONS_00020579-exon-sc0000358-1510915933:116281..116571Clytia hemisphaericaexon
TCONS_00020579-exon-sc0000358-1575043694:116281..116571TCONS_00020579-exon-sc0000358-1575043694:116281..116571Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000358supercontigsc0000358:116281..116571 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
107.183	98.3864	57.7147	34.2782	6.96894	4.8955	28.7188	35.7715	19.9979	23.1528	16.1473	9.96707	4.50329	5.76429	1.31474	1.20911	2.16726	1.13353	21.9967	17.2262	3.11968	4.41565	37.5993	38.2349	0	2.41938	5.04808	3.76685	34.0516	23.709
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020579 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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