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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020581 ID=TCONS_00020581|Name=TCONS_00020581|organism=Clytia hemisphaerica|type=transcript|length=688bp
AACCGACACAACAGTAACGTCGAAGTTGACTTTTTGACGGCGTCGTAAAT
CCTCAAGCTGTTCAGCTTTTTCACCGTGTAAGTAAGTAGTTAatgttgtt
aattttttgatCTCTCGAAATGTTTCAAGTTTAATGTAGAATAAGGTGAA
ACAAATAAAGAAACTCGTAAGAAAGATAGTTATAAACAATATCAAATGCG
AGGAATATCGTGCCGGGACACCCAGGGTGTCTTTATCGGTGCGGTATTCG
ACCCCCATGATAATTCCATTAAAAATACCAGCCGCTAACcaagaaaacaa
aatcattataATGGAGATGCGACGTCTTGCGAAAAATTGATAAGTCAGCA
AAAATCTGACACTTAAAACACGATCGAAGGCTAAACAAGATGACGTGAAT
AGGGAACATATAAACGCAATGCGGCCTGTCAATTGCGCTGTATTTAACAT
AACTTGATCTCCACCTGAAAAGACACCGATCAGCATGATTATCAAGGAGA
ACCATACGTCACAAACACCGATATTAATCAGGAGATGGTACGGCGCGTAA
TTGAGTGCCGGATGCCGGTAAACAGTCCGTGCGATTAGCCCATGTCCGAT
TAAAGACATAAGTCCAATGAAAACACAGACTGTCAGCCAACTTACTAAAC
TCCCGTTTGCGCTATTAATGCCATCGTCGGAAATATTT Run BLAST on NCBI protein sequence of TCONS_00020581-protein >TCONS_00020581-protein ID=TCONS_00020581-protein|Name=TCONS_00020581-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
NISDDGINSANGSLVSWLTVCVFIGLMSLIGHGLIARTVYRHPALNYAPY
HLLINIGVCDVWFSLIIMLIGVFSGGDQVMLNTAQLTGRIAFICSLFTSS
CLAFDRVLSVRFLLTYQFFARRRISIIMILFSWLAAGIFNGIIMGVEYRT
DKDTLGVPARYSSHLILFITIFLTSFFICFTLFYIKLETFREIKKLTTLT
TYLHGEKAEQLEDLRRRQKVNFDVTVVSV Run BLAST on NCBI transcript from alignment at sc0000358:229613..230300 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020581 ID=TCONS_00020581|Name=TCONS_00020581|organism=Clytia hemisphaerica|type=transcript|length=688bp|location=Sequence derived from alignment at sc0000358:229613..230300 (Clytia hemisphaerica)
AAATATTTCCGACGATGGCATTAATAGCGCAAACGGGAGTTTAGTAAGTT
GGCTGACAGTCTGTGTTTTCATTGGACTTATGTCTTTAATCGGACATGGG
CTAATCGCACGGACTGTTTACCGGCATCCGGCACTCAATTACGCGCCGTA
CCATCTCCTGATTAATATCGGTGTTTGTGACGTATGGTTCTCCTTGATAA
TCATGCTGATCGGTGTCTTTTCAGGTGGAGATCAAGTTATGTTAAATACA
GCGCAATTGACAGGCCGCATTGCGTTTATATGTTCCCTATTCACGTCATC
TTGTTTAGCCTTCGATCGTGTTTTAAGTGTCAGATTTTTGCTGACTTATC
AATTTTTCGCAAGACGTCGCATCTCCATtataatgattttgttttcttgG
TTAGCGGCTGGTATTTTTAATGGAATTATCATGGGGGTCGAATACCGCAC
CGATAAAGACACCCTGGGTGTCCCGGCACGATATTCCTCGCATTTGATAT
TGTTTATAACTATCTTTCTTACGAGTTTCTTTATTTGTTTCACCTTATTC
TACATTAAACTTGAAACATTTCGAGAGatcaaaaaattaacaacatTAAC
TACTTACTTACACGGTGAAAAAGCTGAACAGCTTGAGGATTTACGACGCC
GTCAAAAAGTCAACTTCGACGTTACTGTTGTGTCGGTT Coding sequence (CDS) from alignment at sc0000358:229613..230300 >TCONS_00020581 ID=TCONS_00020581|Name=TCONS_00020581|organism=Clytia hemisphaerica|type=CDS|length=687bp|location=Sequence derived from alignment at sc0000358:229613..230300 (Clytia hemisphaerica)
AATATTTCCGACGATGGCATTAATAGCGCAAACGGGAGTTTAGTAAGTTG
GCTGACAGTCTGTGTTTTCATTGGACTTATGTCTTTAATCGGACATGGGC
TAATCGCACGGACTGTTTACCGGCATCCGGCACTCAATTACGCGCCGTAC
CATCTCCTGATTAATATCGGTGTTTGTGACGTATGGTTCTCCTTGATAAT
CATGCTGATCGGTGTCTTTTCAGGTGGAGATCAAGTTATGTTAAATACAG
CGCAATTGACAGGCCGCATTGCGTTTATATGTTCCCTATTCACGTCATCT
TGTTTAGCCTTCGATCGTGTTTTAAGTGTCAGATTTTTGCTGACTTATCA
ATTTTTCGCAAGACGTCGCATCTCCATtataatgattttgttttcttgGT
TAGCGGCTGGTATTTTTAATGGAATTATCATGGGGGTCGAATACCGCACC
GATAAAGACACCCTGGGTGTCCCGGCACGATATTCCTCGCATTTGATATT
GTTTATAACTATCTTTCTTACGAGTTTCTTTATTTGTTTCACCTTATTCT
ACATTAAACTTGAAACATTTCGAGAGatcaaaaaattaacaacatTAACT
ACTTACTTACACGGTGAAAAAGCTGAACAGCTTGAGGATTTACGACGCCG
TCAAAAAGTCAACTTCGACGTTACTGTTGTGTCGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020581-exon-sc0000358-1491911889:229613..230300 | TCONS_00020581-exon-sc0000358-1491911889:229613..230300 | Clytia hemisphaerica | exon |
| TCONS_00020581-exon-sc0000358-1510915933:229613..230300 | TCONS_00020581-exon-sc0000358-1510915933:229613..230300 | Clytia hemisphaerica | exon |
| TCONS_00020581-exon-sc0000358-1575043694:229613..230300 | TCONS_00020581-exon-sc0000358-1575043694:229613..230300 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000358 | supercontig | sc0000358:229613..230300 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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