TCONS_00020594 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020594
Unique NameTCONS_00020594
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length289

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020594 ID=TCONS_00020594|Name=TCONS_00020594|organism=Clytia hemisphaerica|type=transcript|length=289bp
TGAGCACTATTGTAATTTTCAAGATGAAAACAACAGCACCTATCTTTAAA
AgttattgatgtcGATGGAAAGTAACAACGtcaaacagagttgaatatgc
aaagtttacagaaGATGAACGTTTATTTGGAGATGGCCCATTCCTTTGAT
AATGGATGGTTTTAACAACTCAAAATGAGCACTATTGTAACTTTTAAGAT
GAAAACAACAGCACCTATCTTTAAAAgttattgatgtcGATGGAAAATAA
CAACGtcaaacagagttgaatatgcaaagtttacagaaG
Run BLAST on NCBI

transcript from alignment at sc0000359:84661..91510+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020594 ID=TCONS_00020594|Name=TCONS_00020594|organism=Clytia hemisphaerica|type=transcript|length=6850bp|location=Sequence derived from alignment at sc0000359:84661..91510+ (Clytia hemisphaerica)
TGAGCACTATTGTAATTTTCAAGATGAAAACAACAGCACCTATCTTTAAA
AGTAGGTTTTTGTCTCTTTAACAGttttttatttcgttttgaacaggctt
tttttctccatttttaagttaaaaacccgacccttttacaaatctgtatg
agaaaggcaactgtaTACAAAAGCAAGCATCACTCTTtgacgaaaaaaat
atcacttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTGGTAGATTGTTTCAtg
tttcccatgttcaaagtacgaaccgtggaaacatactctttcttactcaa
ataagaaaatgatctgttataatcCATTGAACAGTCTTCCGAAAGCAATA
TGTTACATATTGAATGTGCAACTCAATGAACGTTGTGTTATTGAGGCCCT
TGAGTTTACGACATACCATAATTCAATTATATTGGTATTTCACATTGCAC
TGAAAAACTTGCAATGTTTGAGTTAAAGTATTTGAAAAGCAATACTCCTT
TTgctaatatttttaaagaaataatatgcGAAATAgcctttaatttttct
aaataatgaTGCTCTTACATGGTAAACcttgattttgaaaagataaatga
ACTTGAAAAGAACTGTggcattttttattcaaaataagattatatgtttt
ctatgtttatcaaaaatcactctgCTTTCTTGCCTtcgttctttatttca
tttaaggttattgatgtcGATGGAAAGTAACAACGtcaaacagagttgaa
tatgcaaagtttacagaaGATGAACGTTTATTTGGAGNCGtcaaacagag
ttgaatatgcaaagtttacagaaaATGAACGTTTATTTGGAGATGGCCCA
TTCCTTTGATAATAGATGGTTTTAACAACTCAAAATGAGCACTATTGTAA
CTTTTAAGATGAAAATAACAGCACCTATCTTTAAAGTAGGTTTTTGTCTC
tttaacagtttttttttctcatttagaacaggctttttttctccattttt
aagttagaaacccgacccttttacaaatctgtatgacgaaaaaaatatca
ctttttaGTACGATGGATATGGTATGTTGTGGATGCAatgggtgctaatt
ttggtagattgtttcatgtttcccatgttcaaagtacgaaccgtggaaac
atactctttcttactcaaataNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTGAATGTGCAACTCAATGAACGTTGTGTTATTGAGGCCC
TTGAGTTTACGACATACCATAATTCAATTATATTGGTATTTCACATTGCa
ctgaaaaactttcaatgtttgAGTTATAGTATTTGAAGAGCAATGCtact
ttttctaatatttttaaagaaataatatgcgaaatagactttaatttttc
taaatattgaTGCTCTTACATGGTAAACcttgattttgaaaagataaatg
aACTTGAAAAGAACTGTggcattttttattcaaaaaaagattatatgttt
tctatgtttatcaaaaatcactctgCTTTCTTGCCTtcgttctttatttc
atttaaggttattgatgtcGATGGAAAGTAACAACGtcaaacagagttga
atatgcaaagtttacagaaGATGAACGTTTATTTGGAGATGGCCCATTCC
TTTGATAATGGATGGTTTTAACAACTCAAAATGAGCACTATTGTAACTTT
TAAGATGAAAACAACAGCACCTATCTTTAAAAGTAGGTTTGTGTCTCttt
aacagtttttttttctcatttagaacaggctttttttctccatttttaag
ttagaaacccgacccttttgcaaatctgtatgagaaaggcaactgtaTAC
AAAAGCAAGCATCACTCTTtgacgaaaaaaatatcactttttaGTACGAT
ggatatggtatgttgttgatgcaatgtgtgctaattttggtagattgttt
catgtttcccatgttcaaagtacgaaccgtggaaacatactctttcttac
tcaaataagaaaatgatctgttatagtccattaaacaatcttccGAAAGC
AATATGTTACATATTGAATGTGCAACTCAATGAACTTTGTGTTATTGAGG
CCGTTGAGTTTACGACATACCATAATTCAATTATATTGGTATTTCACATT
GCACTGAAAAACTTGCAATGTTTGAGTTAAAGTATTTGAAGAGCAATGCT
CCtctttctaatatttttaaagaaatattgaTGCTCTTACATGGTAAACc
ttgattttgaaaagataaatgaACTTGAAAAGAACTGTggcattttttat
tcaaaaaaagattatttgttttttatgtttatcaaaaatcactctgCTTT
CTTGCCGtcgttctttatttcatttaagtTTATTGATATCGATGGAAAGT
AACAACGtcaaacagagttgaatatgcGAAGTTTCCAGAAGATGAACGTT
TATTTGGAGATGGCCCATTCCTTTCATAATGGATGGTTTTTAACAACTCA
AAATGAGCACTATTGTAATTTTCAAGATGAAAACAACAGCACCTATCTTT
AAAAGTAGGTTTTTGTCTCTTTAacagtttcttttttcattttgaacagg
ctttttttctccatttttaagctagaaacccgacccttttacaaatctgt
atgagaaaggcaactgtatacaaaagcaaaaatcactctttgacgaaaaa
aatatcactttttaGTACGATAGATATGGTATGTTGTGGATGCAatgggt
gctaattttggtagattgtttCATGTTTCCCATGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCCTTGAGTTTACGACATACCATAATT
CAATTATATTGGTATTTCACATTGCACTGAAAAACTTGCAATGTTTGAGT
TAAAGTATTTGAAGAGCAATGCTCCTTTTGCtaatattttaaagaaataa
tatgcGAAATAgcctttaatttttctaaataatgaTGCTCTTACATGGTA
AACcttgattttgaaaagataactgAACTTGAAAAGAACTGTggcatttt
ttattcaaaaaagattatatgttttctatgtttatcaaaaatcactttgC
TTTCTTGCCTTCGTTCTTTATTTCAATTAAGGTTATTGATGTCGATGGAA
AGTAACAACGtcaaacagagttgaatatgcaaagtttacagaaGATGAAC
GTTTATTTGGAGATGGCCCATTCCTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCgacccttttacaaa
tctgtatgagaaaggcaactgtaTACANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATGCAATGtgt
gctaattttggtagattgtttcatgtttcccatgttcaaagtacgaaccg
tggaaacatACTCCTTCTTACTCAAAttagaaaatgatctgttataatcC
ATTGAACAATCTTCTGAAAGCAATATGTTACATATTGAATGTGCAACTCA
ATGAACGTTGTGTTATTGAGGCCCTTGAGTTTACGACATACCATAATTCA
ATTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTATATTTAAAGAAATAGTATGCGAAATAGTATGCGAAATAgcct
ttaatttttctaaataatgaTGCTCTTACATGGTAAACcttgattttgaa
aagataaatgaACTGGAAAAGAACTGTGGCATTTTCtattcaaaaaaaga
ttatatgttttctatgtttatcaaaaatcactctgCTTTCTTGCCTTCGT
TCTTTATNTATAATGGATGGTTTTTTAACAACTCAAAATGAGCACTATTG
TAATTTTCAAGATGAAAACAACAGCACCTATCTTTAAAAGTAGGTTTTTG
TCTCTTTAACAGTTTCTTTTTTNNNNNNNNNNNNNNNNNNNNNNCTtcgt
tctttatttcatttaaggttattgatgtcGATGGAAAGTAACAACGtcaa
acagagttgaatatgcGAAGTTTACAGAAGATGAACGTTTATTTGGAGAT
GACCCATTCCTTTGATAATGGATTGTTTTTAACAACTCAAAATGAGCACT
ATTGTAACTTTTAAGATGAAAACAACAGCACCTATCTTTAAAAGTAGGTT
TTTGTCTCTTTAACAGTTTNNNNNNNNNNNNNNNNNNNNNNNNGATGCAa
tgggtgctaattttggtagattgtttcatgtttcccatgttcaaagtacg
aaccgtggaaacatACTCCTTCTTACTCAAAttagaaaatgatctgttaa
aatccattaaacaatcttccGAAAGCAATATGTTACATATTGAATGTGCA
ACTCAATGAACGTTGTGTTATTGAGGCCCTTGAGTTTAAGACAAACCATA
ATTCAATTATATTGGTATTTCACATTGCACTGAAAAACTTGCAATGTTTG
AGTTATAGTATTTGAAGAGCAATGCTCCTTTTTCTATTATATTTAAAGAA
ATAGTTTGCGAAATAGTATGCGAAATAgcctttaatttttctaaataatg
aTGCTCTTACATGGTAAACcttgattttgaaaagataaatgaACTTGAAA
AGAACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNctctttcttactcaaataagaaaatgatctgtta
taatccattaaacaatcttccaaaagcaatatgttacATATTCAAAGTGC
AACTCAAAGAACGTTGTGTTATTGAGGCCCTGGAGTTTACAATATACCAT
GATTGAATTATATTGGTATTTCACATTCCACTGAAAAGCTTgcaatattt
gagttaaaatttttgaagagcgATGCttctttttctaatcttttttaaga
aattcaTGCAAAATGGCtgttcatttttctaaaaaatgatgcTCTCACAT
GATGAACGCCTTGTTTGTGAAAGACAAATGAACTGGAAAAAAACTGtagc
aatttttattcaaaaaaagattatttgttTTCTATGTTTATCAAGAATCA
CTATGCTTTCTTGCCGtcgttctttatttcatttaaggttattgatgtcG
ATGGAAAATAACAACGtcaaacagagttgaatatgcaaagtttacagaaG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011565XLOC_011565Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020594-exon-sc0000359-1491911889:84661..84711TCONS_00020594-exon-sc0000359-1491911889:84661..84711Clytia hemisphaericaexon
TCONS_00020594-exon-sc0000359-1510915933:84661..84711TCONS_00020594-exon-sc0000359-1510915933:84661..84711Clytia hemisphaericaexon
TCONS_00020594-exon-sc0000359-1575043694:84661..84711TCONS_00020594-exon-sc0000359-1575043694:84661..84711Clytia hemisphaericaexon
TCONS_00020594-exon-sc0000359-1491911889:86518..86692TCONS_00020594-exon-sc0000359-1491911889:86518..86692Clytia hemisphaericaexon
TCONS_00020594-exon-sc0000359-1510915933:86518..86692TCONS_00020594-exon-sc0000359-1510915933:86518..86692Clytia hemisphaericaexon
TCONS_00020594-exon-sc0000359-1575043694:86518..86692TCONS_00020594-exon-sc0000359-1575043694:86518..86692Clytia hemisphaericaexon
TCONS_00020594-exon-sc0000359-1491911889:91448..91510TCONS_00020594-exon-sc0000359-1491911889:91448..91510Clytia hemisphaericaexon
TCONS_00020594-exon-sc0000359-1510915933:91448..91510TCONS_00020594-exon-sc0000359-1510915933:91448..91510Clytia hemisphaericaexon
TCONS_00020594-exon-sc0000359-1575043694:91448..91510TCONS_00020594-exon-sc0000359-1575043694:91448..91510Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000359supercontigsc0000359:84661..91510 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.965	14.2666	4.27754	4.33485	0	0	0	0.531388	0	0.460828	2.68374	1.47016	1.17449	0	2.25624	0.538066	1.32571	1.16851	1.40795	1.47332	1.26953	1.24924	2.53103	4.60215	0.474011	6.34565	1.21075	0.646071	0	2.49627
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020594 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top