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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020603 ID=TCONS_00020603|Name=TCONS_00020603|organism=Clytia hemisphaerica|type=transcript|length=592bp
TTTTTACTGTGGTTGTGTCCACATGGTTGATATCAAGGCTATGGATTATG
TTGACCTTGATCCGATGTCACCGGACGAATTGAAGCAAGTGTGTAAGAAA
TACCGACAGAAGAAGACTGGTGAAGGTGGTGGAGGAGCAATTGATGGAGA
TCCTATCAACTATGAACTCGATGAGACGGGCGATGAAGTGAACGAAGATG
ATCTAGTCTCCACAAATGGATCAACTGAACAGCTTAATAAATTGGATCCT
GATGAGGGTGCATCAGACATCAACAATCACAGTAGCGGTGCAAATTCATA
CAATGTCAGCACGCATGCGTCAGATGTTGCAGCAGATTTGCCTTCAGAAG
ATGCCGAGCGGCACCCCGTTATACCAACAGAACAGACGAACGGTGAAACA
GGCGCGGAAGAAACGCTCATCGGAACTATCCCTTCACCTACGGAACCATC
CTTTGAAGCAACGGAAGATGGCCGACACTCACCCAAAAAGACGTCGTCCG
TCAGTAATTTCTTAAACGGNAAAGTtgggacagaaatattttagacgata
cgcatcccctatatcaaatcatatcagaggggatgcgtgcag Run BLAST on NCBI transcript from alignment at sc0000359:136279..138822+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020603 ID=TCONS_00020603|Name=TCONS_00020603|organism=Clytia hemisphaerica|type=transcript|length=2544bp|location=Sequence derived from alignment at sc0000359:136279..138822+ (Clytia hemisphaerica)
TTTTTACTGTGGTTGTGTCCACATGGTTGATATCAAGGCTATGGATTATG
TTGACCTTGATGTGAGTGACTTGTTAGGCTTTGACCGTGCTCTCATGAAC
CTTTAAAGTGAACCTTGCGAAAtgagaaaaacactgttttcaaTCATATT
GTATTTGTAAGCATCCAGCTTTTTAGCTCCTTAAGATTAATTCGCTAACT
TTTGCTGATGTTGGTAAAAACCTTGCGCTGTACTATGTACGGATGTATTT
CACTCGTCCAGTGAGAAAaacgaccctgccgacgcaTCTGACTGTCTGGT
GTTCGTCCGATGTGCTACAATACACAAATTCTTAACACCGGACTTTTTCT
TTAGCGTTTTGTCTcgcaccggacgcaccggaccgATTAACGCCTGTCCG
GTGTTTGGATTGTCTAGTGGTTAAAAGTTTTATCACTCGGCACCGGACAT
TCCGCGTCGTTGGGAAAACCTTAACTCTGTCCTCAAAGAAAAGGAACCGT
TTGCCGTCATTCAACTCAATTTACTTTACTCTCTTTTCTCTCTCTCTTCA
CAGCCGATGTCACCGGACGAATTGAAGCAAGTGTGTAAGAAATACCGACA
GAAGAAGACTGGTGAAGGTGGTGGAGGAGCAATTGATGGAGATCCTATCA
ACTATGAACTCGATGAGACGGGCGATGAAGTGAACGAAGATGATCTAGTC
TCCACAAATGGATCAACTGAACAGCTTAATAAATTGGTGAGTTCGTTGTT
CTCAtggtatgcaccattgcaatgtcttccacggacccaaaacctgattg
gttgaaaggcgccgtggtatagtggtcattgaccttggttgctgcacagg
cgactgaagCTCGATTCCCACACGGTGTtgtggttcacttggcaagtgaa
tgaaccttcgtcCGGGTCAATCCATGCCATGTGAAGTTGGCTAGTCAGTT
Cagggtgctgacggggcgctaattgaaagcgtctatgactgattttacat
cacttacaatcaatcagctgttggatccgtgatgtaatgtcagaagtcat
tgcagtgatgcatatcatgatttagcgagtttatgtactGATTGATGTCG
AAGACTACGGTAAGTGAAGTTGACGCAAAAAAGTCAATAGTTGATGTACA
Gccctatatcgcctttgctcacctaaacagacgacggtattttagtgttt
ttaccGTTGttgagcaaagtggacggtgattttagcgacatgtcaacttt
gccgtataccgtctccttcgatttatctcgaatacaaaAACTCGCTATTG
GCTCCGATTGGGAGGTTTTTGTCGGCTGATATTTATTCTTTAAAAATTCC
AAGCACAAATGAGGACAGGTATAAAATCTGTTCATGTCAGTTTATGTTGA
AAGCTGGGGAAGCCATTTCATCGAGTTGGACTCGATCACTTTCTTTCAGG
ATCCTGATGAGGGTGCATCAGACATCAACAATCACAGTAGCGGTGCAAAT
TCATACAATGTCAGCACGCATGCGTCAGATGTTGCAGCAGATTTGCCTTC
AGAAGATGCCGAGCGGCACCCCGTTATACCAACAGAACAGACGAACGGTG
AAACAGGTGCGGAAGAAACGCTCATCGGAACCATCCCTTCACCTACGGAA
CCATCCTTTGAAGCAACGGAAGATGGCCGACACTCACCCAAAAAGACGTC
GTCCGTCAGTAATTTCTTAAACGGCAATATGGGGCAGGATGAGGCGCGAG
AGAAAATCAAGAACGCCTTCAAACATGGCATACCAAACTTGGGAACACGC
TCTTTGAGCAAAGCGTCCGATTTGTTCCGTAAAAAGAAGAAAGGTAAAAA
CCGGTCGCATCGCCATCAACATTCCGTCCACTTGACTGTTCCAAATGATG
GTGGGGAAACAACCACCGACTTTGAGGAAGGAGATTCAGACGCTTCCACA
GACAACCGACTGGATGAAGGTCAGTTAACAATCTGTTACTGGGTTGAGTT
TAATCGACTAACAATTTGCATTTCTCTGATCTGTAGCGTTATAGttaggc
tgcgcgcatccccagaatttattttgttataggggatgcgtatcgtgtat
gaaattctcgtccgagaattacctcaaatttggggtaaccaagatttgca
taaatttacataatttcgtcacatccaatcaaagaaagaaaaaaatgaag
tcattgtgctgttgtttttataattatcaattttcattcattgaacaaag
aaaaaaagaagtcattgtattgctatgacgcataatcaaaaaagaaaaaa
gaaaagacgggNACACCCCGTTATACCAACAGAACAGACGAACGGTGAAA
CAGGCGCGGAAGAAACGCTCATCGGAACTATCCCTTCACCTACGGAACCA
TCCTTTGAAGCAACGGAAGATGGCCGACACTCACCCAAAAAGACGTCGTC
CGTCAGTAATTTCTTAAACGGNAAAGTtgggacagaaatattttagacga
tacgcatcccctatatcaaatcatatcagaggggatgcgtgcag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020603-exon-sc0000359-1491911889:136279..136339 | TCONS_00020603-exon-sc0000359-1491911889:136279..136339 | Clytia hemisphaerica | exon |
| TCONS_00020603-exon-sc0000359-1510915933:136279..136339 | TCONS_00020603-exon-sc0000359-1510915933:136279..136339 | Clytia hemisphaerica | exon |
| TCONS_00020603-exon-sc0000359-1575043694:136279..136339 | TCONS_00020603-exon-sc0000359-1575043694:136279..136339 | Clytia hemisphaerica | exon |
| TCONS_00020603-exon-sc0000359-1491911889:136832..137014 | TCONS_00020603-exon-sc0000359-1491911889:136832..137014 | Clytia hemisphaerica | exon |
| TCONS_00020603-exon-sc0000359-1510915933:136832..137014 | TCONS_00020603-exon-sc0000359-1510915933:136832..137014 | Clytia hemisphaerica | exon |
| TCONS_00020603-exon-sc0000359-1575043694:136832..137014 | TCONS_00020603-exon-sc0000359-1575043694:136832..137014 | Clytia hemisphaerica | exon |
| TCONS_00020603-exon-sc0000359-1491911889:137728..137884 | TCONS_00020603-exon-sc0000359-1491911889:137728..137884 | Clytia hemisphaerica | exon |
| TCONS_00020603-exon-sc0000359-1510915933:137728..137884 | TCONS_00020603-exon-sc0000359-1510915933:137728..137884 | Clytia hemisphaerica | exon |
| TCONS_00020603-exon-sc0000359-1575043694:137728..137884 | TCONS_00020603-exon-sc0000359-1575043694:137728..137884 | Clytia hemisphaerica | exon |
| TCONS_00020603-exon-sc0000359-1491911889:138632..138822 | TCONS_00020603-exon-sc0000359-1491911889:138632..138822 | Clytia hemisphaerica | exon |
| TCONS_00020603-exon-sc0000359-1510915933:138632..138822 | TCONS_00020603-exon-sc0000359-1510915933:138632..138822 | Clytia hemisphaerica | exon |
| TCONS_00020603-exon-sc0000359-1575043694:138632..138822 | TCONS_00020603-exon-sc0000359-1575043694:138632..138822 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000359 | supercontig | sc0000359:136279..138822 + |
Blast
The following BLAST results are available for this feature:
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