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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020609 ID=TCONS_00020609|Name=TCONS_00020609|organism=Clytia hemisphaerica|type=transcript|length=1612bpRun BLAST on NCBI protein sequence of TCONS_00020609-protein >TCONS_00020609-protein ID=TCONS_00020609-protein|Name=TCONS_00020609-protein|organism=Clytia hemisphaerica|type=polypeptide|length=508bp MPILTQGDYVWLPCKKGEFEVPIGAKVVHHDGSRVKVVDDEGADHWFSAQRun BLAST on NCBI transcript from alignment at sc0000359:184951..192412+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020609 ID=TCONS_00020609|Name=TCONS_00020609|organism=Clytia hemisphaerica|type=transcript|length=7462bp|location=Sequence derived from alignment at sc0000359:184951..192412+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000359:184951..192412+ >TCONS_00020609 ID=TCONS_00020609|Name=TCONS_00020609|organism=Clytia hemisphaerica|type=CDS|length=19812bp|location=Sequence derived from alignment at sc0000359:184951..192412+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020609 vs. Swiss-Prot (Human)
Match: MYO7A (Unconventional myosin-VIIa OS=Homo sapiens GN=MYO7A PE=1 SV=2) HSP 1 Score: 664.455 bits (1713), Expect = 0.000e+0 Identity = 326/512 (63.67%), Postives = 394/512 (76.95%), Query Frame = 3
Query: 87 MPILTQGDYVWLPCKKG-EFEVPIGAKVVHHDGSRVKVVDDEGADHWFSAQEIGNLKPMHETSAEGVNDMIRLGDLNEAGILRNLFKRYYEQNIYTYTGSILVAVNPYQVYPIYDVSHIKKYQGRKIGELPPHIFAISDNAYYFMRREKHDQCIIISGESGAGKTESTKLILQYLAAISGQHSWIEQQILEANPIMEAFGNAKTVRNDNSSRFGKYIDVHFTYEGVIEGAKIDQYLLEKSRLVSQQKDERNYHIFYRMLAGMSSSEKQRFLLTKAEDYHYLTQGNCISCESMDEVEEFSTIRGSMKVLMFSDAETSYIFKLLAGILHLGNIKFKTNNESTLDASEIISLNALNAAATMFEVPAERLVTVLTNRSTFARGEVIVSPIRAEQSLDVRDAFAKGIYGRVFIWIVGKINQAVYKPT--DTKR-RLSIGVLDIFGXXXXXXXXXXQLCINYCNENLQQFFVQHIFKLEQKEYDREGIQWQHIQFVDNQSTLDMLAQKPMNIIALIDE 1610
M IL QGD+VW+ + G EF+VPIGA V D +V+VVDDE +HW S Q ++KPMH TS GV DMIRLGDLNEAGILRNL RY + IYTYTGSILVAVNPYQ+ IY HI++Y +KIGE+PPHIFAI+DN Y+ M+R DQC IISGESGAGKTESTKLILQ+LAAISGQHSWIEQQ+LEA PI+EAFGNAKT+RNDNSSRFGKYID+HF G IEGAKI+QYLLEKSR+ Q DERNYH+FY ML GMS +K++ L +A DY+YL GNCI+CE + +E++ IR +MKVLMF+D E I KLLA ILHLGN++++ LDA E++ +L AA++ EV L++ LT+R+ RGE + +P+ EQ+LDVRDAF KGIYGR+F+WIV KIN A+YKP D K R SIG+LDIFGFE+F NSFEQLCIN+ NE+LQQFFV+H+FKLEQ+EYD E I W HI+F DNQ LDM+A KPMNII+LIDE
Sbjct: 1 MVILQQGDHVWMDLRLGQEFDVPIGAVVKLCDSGQVQVVDDEDNEHWISPQNATHIKPMHPTSVHGVEDMIRLGDLNEAGILRNLLIRYRDHLIYTYTGSILVAVNPYQLLSIYSPEHIRQYTNKKIGEMPPHIFAIADNCYFNMKRNSRDQCCIISGESGAGKTESTKLILQFLAAISGQHSWIEQQVLEATPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRGAIEGAKIEQYLLEKSRVCRQALDERNYHVFYCMLEGMSEDQKKKLGLGQASDYNYLAMGNCITCEGRVDSQEYANIRSAMKVLMFTDTENWEISKLLAAILHLGNLQYEARTFENLDACEVLFSPSLATAASLLEVNPPDLMSCLTSRTLITRGETVSTPLSREQALDVRDAFVKGIYGRLFVWIVDKINAAIYKPPSQDVKNSRRSIGLLDIFGFENFAVNSFEQLCINFANEHLQQFFVRHVFKLEQEEYDLESIDWLHIEFTDNQDALDMIANKPMNIISLIDE 512 The following BLAST results are available for this feature:
BLAST of TCONS_00020609 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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