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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020610 ID=TCONS_00020610|Name=TCONS_00020610|organism=Clytia hemisphaerica|type=transcript|length=1695bpRun BLAST on NCBI transcript from alignment at sc0000359:192906..199184+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020610 ID=TCONS_00020610|Name=TCONS_00020610|organism=Clytia hemisphaerica|type=transcript|length=6279bp|location=Sequence derived from alignment at sc0000359:192906..199184+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00020610 vs. Swiss-Prot (Human)
Match: MYO7A (Unconventional myosin-VIIa OS=Homo sapiens GN=MYO7A PE=1 SV=2) HSP 1 Score: 423.705 bits (1088), Expect = 1.300e-130 Identity = 255/572 (44.58%), Postives = 356/572 (62.24%), Query Frame = 1
Query: 4 HHQKHPFFISPKSRAAKLFGVVHFAGPVYYNTVGILEKNRDTFNADLNDLIGKSKCQFLLHLFEKELKMGDNTRKRSPTLGSQFKKSLDLLMLTLNQCHPFFIRCLKPNDFKRPMMFDRELCTRQLRYSGMMETIRIRRGGYPIRHSFQAFVDRYHMLVRGLDGAMR-SKAKEACHLIASHALQG-SDWQLGHTKVFLKDAQDQDLEIKRDRVVTAGVVLIQKTFRGHKHRKHFTKLRSSTVTLQKHWRAFAAKRRYKRMMHGFERLQAVVRSRQLHASYGEMRSRVMSFQQLCRGYLARREYKIKLGAIITIQAGFRMVLAKSEKERRRKEYLIFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQERVVILQRQMEQDEQKKRQELEHKKDVINQAXXXXXXXXXXXXXXXXXXXQIFGFLPGNSESTGNSQPTKVPKAFGDLTVAREQYILS--EGSTELPGETFEDLKEFTFEKFAAMXPGETFEDLKEFTFEKFAAMYFQGQNTPVFINHKLDRPLLYHEEQTDNMAALAVWVTILRFMGEMQDPK----MGKEFDNTPIMNKIYD 1695
H+ + +I PK+ FG+ HFAG VYY T G LEKNRDT + D+ L+ S+ +F+ +F+ ++ MG TRKRSPTL SQFK+SL+LLM TL C PFF+RC+KPN+FK+PM+FDR LC RQLRYSGMMETIRIRR GYPIR+SF FV+RY +L+ G+ A + + C +A L DWQ+G TK+FLKD D LE++RD+ +T V+L+QK RG K R +F KL+++ +Q+HWR ++ Y M GF RLQA+ RSR+LH Y R R++ FQ CR YL R+ ++ +L A++T+QA R ++A+ +R R EYL LEAEK+R EE +LRK++ AKKA E AE+K QER+ L R+ + E K+++ KK+++ Q R + V+ S++VD++FGFL + G Q + P F DL R + + + + LP E EDL E+ F KFAA YFQG T + L +PLLYH+++ D +AALAVW+TILRFMG++ +PK M + P+M KIY+
Sbjct: 531 QHKLNANYIPPKNNHETQFGINHFAGIVYYETQGFLEKNRDTLHGDIIQLVHSSRNKFIKQIFQADVAMGAETRKRSPTLSSQFKRSLELLMRTLGACQPFFVRCIKPNEFKKPMLFDRHLCVRQLRYSGMMETIRIRRAGYPIRYSFVEFVERYRVLLPGVKPAYKQGDLRGTCQRMAEAVLGTHDDWQIGKTKIFLKDHHDMLLEVERDKAITDRVILLQKVIRGFKDRSNFLKLKNAATLIQRHWRGHNCRKNYGLMRLGFLRLQALHRSRKLHQQYRLARQRIIQFQARCRAYLVRKAFRHRLWAVLTVQAYARGMIARRLHQRLRAEYLWRLEAEKMRLAEEEKLRKEMSAKKAKEEAERKHQERLAQLAREDAERELKEKEAARRKKELLEQ----MERARHEPVNHSDMVDKMFGFLGTSGGLPG--QEGQAPSGFEDLERGRREMVEEDLDAALPLPDEDEEDL--------------------SEYKFAKFAATYFQGTTTHSYTRRPLKQPLLYHDDEGDQLAALAVWITILRFMGDLPEPKYHTAMSDGSEKIPVMTKIYE 1076 The following BLAST results are available for this feature:
BLAST of TCONS_00020610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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