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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020612 ID=TCONS_00020612|Name=TCONS_00020612|organism=Clytia hemisphaerica|type=transcript|length=3361bpRun BLAST on NCBI transcript from alignment at sc0000359:199391..234668+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020612 ID=TCONS_00020612|Name=TCONS_00020612|organism=Clytia hemisphaerica|type=transcript|length=35278bp|location=Sequence derived from alignment at sc0000359:199391..234668+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00020612 vs. Swiss-Prot (Human)
Match: MYO7A (Unconventional myosin-VIIa OS=Homo sapiens GN=MYO7A PE=1 SV=2) HSP 1 Score: 1220.3 bits (3156), Expect = 0.000e+0 Identity = 614/1084 (56.64%), Postives = 776/1084 (71.59%), Query Frame = 2
Query: 2 FRDEIYSQICKQLCQNPKKTSYTRGWVLLSLCLGCFAPSETFSKYLMNFIQNGPDSTVTYCMKRLRRTMKNGTRHQPPSWLELQAVKYKRHLLLPITFMDGNTKTLLADSATTSKELCEELAKKIDLKDQFGFSLYIALFDKVSSLGSGSDHVMDAISQCEQYAKEQGAKEQNAPWRLFFRKEIFSPWHNPTIDSAGTNLIYQQVIRGVKFGEYRCNSKEEFADIAAKQYYIEYKNDFKTSRVKSLLPNYIPDSYLQNTKAYDMWCQLIATHHDKLVKNLFNEYNQICEQIKRKELPSDYFIKKRNPQDALRVKEDIVYHAKFRWPLLFSRFYEAHRFSGPALPRDDVIIAVNWTGVYIVDSEERVLMECSFPELLAITGGND---------------------------------------KVPGQSFTLSTVKGLEYTFTSSNAEDIRELISFFLEGLKKRSKYVVATQDYSSNS-ETSTILSLRKGDLVYLEDGHGEDVITNGWCRGYSERTREHGDFPSECVYVLPTVEKPQRDVLEMFFXXXXXXXXXTQGAYPASMEIDNIPIPERPHTLEEFSMQHFNPLPKRTLSKTLNSIRKIR-KDIPWAFTKEPIKQPLMKRLNDIEELNSKSIQTFLAIMKYMGDYPSSKSVRKSTDLTDAMFEFPLLQEPLRDEVYCQIIKQLTDNPHKLSEERGWELMWLLTGSFACSTRLQQDVKLFLKSKSGQWSIAGDCYIRLHKTLRQGPRKYPPHLVEVEAVQEKTVRIFHKVYFPDDTNEAFEVESSTRAKDFCDQIGKKLQIRSSEGFSLFVKIADKVISVPEADFFFDFVRHLIEWLKKARPISQRDGAALNMSYQVFFMKKLWTSTEIGRDPNADTIFHFHQELPKLLRGYHKCTVEEAMTLAALQYKVRYGEDRSALQQITKHLERFVPSAMIASVQPIDKWREGIEYHYKNLSGRRKEECKVLFLKIIAKKTTFGSAFFEVRQTTDPRYPDQLLIAINKNGVNLIDPNSKDLLVTYPFTKIFNWSSGNTFFHMTIGNLVKGTKLLCETNLGYKMDDLLTSYISQMLSTMNKHKGTISFK 3130
RDEIY QI KQL NP K+SY RGW+L+SLC+GCFAPSE F KYL NFI GP YC +RLRRT NGTR QPPSWLELQA K K+ ++LP+TFMDG TKTLL DSATT+KELC LA KI LKD+FGFSLYIALFDKVSSLGSGSDHVMDAISQCEQYAKEQGA+E+NAPWRLFFRKE+F+PWH+P+ D+ TNLIYQQV+RGVKFGEYRC +++ A++A++QY+++Y ++ R+ +L+P YIPD + K + W QL H K + + ++R DA +VKED+V +A+F+WPLLFSRFYEA++FSGP+LP++DVI+AVNWTGVY VD +E+VL+E SFPE++A++ + K SFTL+T+KG EYTFTSSNAEDIR+L+ FLEGL+KRSKYVVA QD + + E S LS KGDL+ L+ GE V+ +GW G +ERT++ GDFP++ VYV+PTV P R+++ + + + + + E + + +P+TLEEFS +F P PK TLS+ + + K R KD W+ T+EP+KQ L+K+L EEL+ ++ F+A++KYMGDYPS K R +LTD +FE PL EPL+DE Y QI+KQLTDN + SEERGWEL+WL TG F S L V+ FL+S+ +A DC RL K LR G RKYPPHLVEVEA+Q KT +IFHKVYFPDDT+EAFEVESST+AKDFC I +L ++SSEGFSLFVKIADKV+SVPE DFFFDFVRHL +W+KKARPI +DG +++YQVFFMKKLWT+T G+DP AD+IFH++QELPK LRGYHKCT EE + L AL Y+V++ ED+S I K L VP +I V P D W+ I ++ +G+ KEE K+ FLK+I K TFGSAFFEV+QTT+P +P+ LLIAINK GV+LIDP +KD+L T+PFTKI NWSSGNT+FH+TIGNLV+G+KLLCET+LGYKMDDLLTSYISQML+ M+K +G+ S K
Sbjct: 1167 LRDEIYCQISKQLTHNPSKSSYARGWILVSLCVGCFAPSEKFVKYLRNFIHGGPPGYAPYCEERLRRTFVNGTRTQPPSWLELQATKSKKPIMLPVTFMDGTTKTLLTDSATTAKELCNALADKISLKDRFGFSLYIALFDKVSSLGSGSDHVMDAISQCEQYAKEQGAQERNAPWRLFFRKEVFTPWHSPSEDNVATNLIYQQVVRGVKFGEYRCEKEDDLAELASQQYFVDYGSEMILERLLNLVPTYIPDREITPLKTLEKWAQLAIAAHKKGI-----------------------YAQRRT--DAQKVKEDVVSYARFKWPLLFSRFYEAYKFSGPSLPKNDVIVAVNWTGVYFVDEQEQVLLELSFPEIMAVSSSRECRVWLSLGCSDLGCAAPHSGWAGLTPAGPCSPCWSCRGAKTTAPSFTLATIKGDEYTFTSSNAEDIRDLVVTFLEGLRKRSKYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDSVYVMPTVTMPPREIVALVTMTPDQRQDVVRLLQLRTAEPE---VRAKPYTLEEFSYDYFRPPPKHTLSRVM--VSKARGKDRLWSHTREPLKQALLKKLLGSEELSQEACLAFIAVLKYMGDYPS-KRTRSVNELTDQIFEGPLKAEPLKDEAYVQILKQLTDNHIRYSEERGWELLWLCTGLFPPSNILLPHVQRFLQSRK-HCPLAIDCLQRLQKALRNGSRKYPPHLVEVEAIQHKTTQIFHKVYFPDDTDEAFEVESSTKAKDFCQNIATRLLLKSSEGFSLFVKIADKVLSVPENDFFFDFVRHLTDWIKKARPI--KDGIVPSLTYQVFFMKKLWTTTVPGKDPMADSIFHYYQELPKYLRGYHKCTREEVLQLGALIYRVKFEEDKSYFPSIPKLLRELVPQDLIRQVSP-DDWKRSIVAYFNKHAGKSKEEAKLAFLKLIFKWPTFGSAFFEVKQTTEPNFPEILLIAINKYGVSLIDPKTKDILTTHPFTKISNWSSGNTYFHITIGNLVRGSKLLCETSLGYKMDDLLTSYISQMLTAMSKQRGSRSGK 2215 HSP 2 Score: 145.591 bits (366), Expect = 5.446e-35 Identity = 103/363 (28.37%), Postives = 186/363 (51.24%), Query Frame = 2
Query: 1883 LLQEPLRDEVYCQIIKQLTDNPHKLSEERGWELMWLLTGSFACSTRLQQDVKLFLKSKSGQWSIAGDCYIRLHKTLRQGPRKYPPHLVEVEAVQEKTVRIFHKVYFPDDTNEAFEVESSTRAKDFCDQIGKKLQIRSSEGFSLFVKIADKVISVPEADFFFDFVRHLIEWLKKARPISQRDGAA-LNMSYQVFFMKKLWTSTEIGRDPNADTIFHFHQELPKLLRGYHKCTVEEAMT-LAALQYKVRYGEDRSALQQITKHLERFVPSAMIASVQPIDKWRE-GIEYHYKNLSGRRKEECKVLFLKIIA----KKTTFGSAFFEVRQTTDPRYP-DQLLIAINKNGVNLIDPNSKDLL-VTYP 2944
+L+ LRDE+YCQI KQLT NP K S RGW L+ L G FA S + + ++ F+ G A C RL +T G R PP +E++A + K I V F D T + +S+T AK+ C+ + K+ ++ GFSL++ + DKV S+ H+++ + + ++ GA N +++FF K+++T + N T + Q + + G ++C E+ + LA+ QY V YG + L+++ + ++P I ++ ++KW + I H K + +R+ + + + +++ K S F+E + + P P + +++A+N GV +D + LL +++P
Sbjct: 1162 ILRPALRDEIYCQISKQLTHNPSKSSYARGWILVSLCVGCFAPSEKFVKYLRNFI--HGGPPGYAPYCEERLRRTFVNGTRTQPPSWLELQATKSKKP-IMLPVTFMDGTTKTLLTDSATTAKELCNALADKISLKDRFGFSLYIALFDKVSSLGSGS------DHVMDAISQCEQYAKEQGAQERNAPWRLFFRKEVFTPWHSPSEDNVATNLIYQQVVRGVKFGEYRCEKEDDLAELASQQYFVDYGSE-MILERLLNLVPTYIPDREITPLKTLEKWAQLAIAAHKKGIYAQRRTDAQKVKEDVVSYARFKWPLLFSRFYEAYKFSGPSLPKNDVIVAVNWTGVYFVDEQEQVLLELSFP 1514 The following BLAST results are available for this feature:
BLAST of TCONS_00020612 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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