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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020613 ID=TCONS_00020613|Name=TCONS_00020613|organism=Clytia hemisphaerica|type=transcript|length=1558bpRun BLAST on NCBI transcript from alignment at sc0000359:199392..212650+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020613 ID=TCONS_00020613|Name=TCONS_00020613|organism=Clytia hemisphaerica|type=transcript|length=13259bp|location=Sequence derived from alignment at sc0000359:199392..212650+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00020613 vs. Swiss-Prot (Human)
Match: MYO7A (Unconventional myosin-VIIa OS=Homo sapiens GN=MYO7A PE=1 SV=2) HSP 1 Score: 616.69 bits (1589), Expect = 0.000e+0 Identity = 298/542 (54.98%), Postives = 378/542 (69.74%), Query Frame = 1
Query: 1 FRDEIYSQICKQLCQNPKKTSYTRGWVLLSLCLGCFAPSETFSKYLMNFIQNGPDSTVTYCMKRLRRTMKNGTRHQPPSWLELQAVKYKRHLLLPITFMDGNTKTLLADSATTSKELCEELAKKIDLKDQFGFSLYIALFDKVSSLGSGSDHVMDAISQCEQYAKEQGAKEQNAPWRLFFRKEIFSPWHNPTIDSAGTNLIYQQVIRGVKFGEYRCNSKEEFADIAAKQYYIEYKNDFKTSRVKSLLPNYIPDSYLQNTKAYDMWCQLIATHHDKLVKNLFNEYNQICEQIKRKELPSDYFIKKRNPQDALRVKEDIVYHAKFRWPLLFSRFYEAHRFSGPALPRDDVIIAVNWTGVYIVDSEERVLMECSFPELLAITGGND---------------------------------------KVPGQSFTLSTVKGLEYTFTSSNAEDIRELISFFLEGLKKRSKYVVATQDYSSNS-ETSTILSLRKGDLVYLEDGHGEDVITNGWCRGYSERTREHGDFPSECVYVLPTVEKPQRDVLEM 1506
RDEIY QI KQL NP K+SY RGW+L+SLC+GCFAPSE F KYL NFI GP YC +RLRRT NGTR QPPSWLELQA K K+ ++LP+TFMDG TKTLL DSATT+KELC LA KI LKD+FGFSLYIALFDKVSSLGSGSDHVMDAISQCEQYAKEQGA+E+NAPWRLFFRKE+F+PWH+P+ D+ TNLIYQQV+RGVKFGEYRC +++ A++A++QY+++Y ++ R+ +L+P YIPD + K + W QL H K + + ++R DA +VKED+V +A+F+WPLLFSRFYEA++FSGP+LP++DVI+AVNWTGVY VD +E+VL+E SFPE++A++ + K SFTL+T+KG EYTFTSSNAEDIR+L+ FLEGL+KRSKYVVA QD + + E S LS KGDL+ L+ GE V+ +GW G +ERT++ GDFP++ VYV+PTV P R+++ +
Sbjct: 1167 LRDEIYCQISKQLTHNPSKSSYARGWILVSLCVGCFAPSEKFVKYLRNFIHGGPPGYAPYCEERLRRTFVNGTRTQPPSWLELQATKSKKPIMLPVTFMDGTTKTLLTDSATTAKELCNALADKISLKDRFGFSLYIALFDKVSSLGSGSDHVMDAISQCEQYAKEQGAQERNAPWRLFFRKEVFTPWHSPSEDNVATNLIYQQVVRGVKFGEYRCEKEDDLAELASQQYFVDYGSEMILERLLNLVPTYIPDREITPLKTLEKWAQLAIAAHKKGI-----------------------YAQRRT--DAQKVKEDVVSYARFKWPLLFSRFYEAYKFSGPSLPKNDVIVAVNWTGVYFVDEQEQVLLELSFPEIMAVSSSRECRVWLSLGCSDLGCAAPHSGWAGLTPAGPCSPCWSCRGAKTTAPSFTLATIKGDEYTFTSSNAEDIRDLVVTFLEGLRKRSKYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDSVYVMPTVTMPPREIVAL 1683 HSP 2 Score: 126.716 bits (317), Expect = 1.714e-30 Identity = 105/392 (26.79%), Postives = 193/392 (49.23%), Query Frame = 1
Query: 1 FRDEIYSQICKQLCQNPKKTSYTRGWVLLSLCLGCFAPSETFSKYLMNFIQNGPDSTVTY-CMKRLRRTMKNGTRHQPPSWLELQAVKYKR-HLLLPITFMDGNTKTLLADSATTSKELCEELAKKIDLKDQFGFSLYIALFDKVSSLGSGSDHVMDAISQCEQYAKE-QGAKEQNAP---WRLFFRKEIFS---PWHNPTIDSAGTNLIYQQVIRGVKFGEYRCNSKEEFADIAAKQYYIEYKNDFKTSRVKSLLPNYIPDSYLQNTKAYDMWCQLIATHHDKLVKNLFNEYNQICEQIKRKELPSDYFIKKRNPQDALRVKEDIVYHAKFRWPLLFSRFYEAHRFSGPALPRDDVIIAVNWTGVYIVDSEER-VLMECSFPELLAITGGN 1146
+DE Y QI KQL N + S RGW LL LC G F PS ++ F+Q+ + C++RL++ ++NG+R PP +E++A+++K + + F D + +S+T +K+ C+ +A ++ LK GFSL++ + DKV S+ +D D + + K+ + K+ P +++FF K++++ P +P DS YQ++ + ++ G ++C ++EE + A Y ++++ D KS P+ IP L+ D+ Q+ + + FN++ K KE F+K F+WP S F+E + + P P + ++IA+N GV ++D + + +L F ++ + GN
Sbjct: 1809 LKDEAYVQILKQLTDNHIRYSEERGWELLWLCTGLFPPSNILLPHVQRFLQSRKHCPLAIDCLQRLQKALRNGSRKYPPHLVEVEAIQHKTTQIFHKVYFPDDTDEAFEVESSTKAKDFCQNIATRLLLKSSEGFSLFVKIADKVLSVPE-NDFFFDFVRHLTDWIKKARPIKDGIVPSLTYQVFFMKKLWTTTVPGKDPMADSIFH--YYQELPKYLR-GYHKC-TREEVLQLGALIYRVKFEED------KSYFPS-IP-KLLRELVPQDLIRQVSPDDWKRSIVAYFNKHAG-----KSKEEAKLAFLK-----------------LIFKWPTFGSAFFEVKQTTEPNFP-EILLIAINKYGVSLIDPKTKDILTTHPFTKISNWSSGN 2164 The following BLAST results are available for this feature:
BLAST of TCONS_00020613 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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