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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020634 ID=TCONS_00020634|Name=TCONS_00020634|organism=Clytia hemisphaerica|type=transcript|length=2164bpRun BLAST on NCBI protein sequence of TCONS_00020634-protein >TCONS_00020634-protein ID=TCONS_00020634-protein|Name=TCONS_00020634-protein|organism=Clytia hemisphaerica|type=polypeptide|length=611bp MATSCGCCERWSIYRRTIRRDLRLVRIVAGLEKGIKRAIRRNHITSDIFDRun BLAST on NCBI transcript from alignment at sc0000359:255071..264793+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020634 ID=TCONS_00020634|Name=TCONS_00020634|organism=Clytia hemisphaerica|type=transcript|length=9723bp|location=Sequence derived from alignment at sc0000359:255071..264793+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000359:255071..264793+ >TCONS_00020634 ID=TCONS_00020634|Name=TCONS_00020634|organism=Clytia hemisphaerica|type=CDS|length=16524bp|location=Sequence derived from alignment at sc0000359:255071..264793+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020634 vs. Swiss-Prot (Human)
Match: S27A1 (Long-chain fatty acid transport protein 1 OS=Homo sapiens GN=SLC27A1 PE=2 SV=1) HSP 1 Score: 515.768 bits (1327), Expect = 2.576e-173 Identity = 253/568 (44.54%), Postives = 361/568 (63.56%), Query Frame = 1
Query: 280 IKRAIRRNHITSDIFDATALKHPNKIAVCSSDDLVQYTFTELKNLINQIANIFYDLGYRKNDVVILFMENRPEYVAFWLGLSKLGVVTSLVNYNLRRESLEHCIKVAGAKGIIFSAETEGALRDIQSEL-RGYEFYCYGSANR---IKEATDLPELIESTSTSNPPRPDNLTFYDKLIYMYTSGTTGLPKPAVIRHTRFFFMVNGMASAFKVTEDDINYVALPLYHSNGGVGGIGMMIYKGSTVIVAKKFSASKFFQDCAYHGATMFNYIGETCRYLLAQPPSRFDRAHRLRLAIGNGLRPQIWAEFKDRFSIDLIGECYASTEGNANMINIDNRIGAVGFNSVIAPGFYPIRLIRVDRSNGEIERDENGMAIACEPGEAGELVGRV-RNDPVHQFDGYVDKEATDKKIVHDIFVKGDSAFRSGDILLQDKEGYFYFQDRGGDTFRWKGENVGTAEVEGVITRILRMTDVVVYGVEIPGIEGRAGMACIADPDYIVDLVYLRNELLNKVPNYARPQFIRLSNGDAIEQTSTFKYKKVKLREEGFNPLKVVDDRLYFNNQRTGRYEVLD 1968
++R R H IF A + P ++A+ + +TF +L N +AN+F LG+ DVV +F+E RPE+V WLGL+K G+ +L+N NLRRE L C+ +GAK +IF E A+ ++ L + +C G + + L L++ ST+ + + D+L Y+YTSGTTGLPK A++ H+R++ M A+++ D+ Y LPLYHS G + G+G + G TV++ KKFSAS+F+ DC + T+ YIGE CRYLL QP +R HR+RLA+GNGLRP IW EF +RF + IGE Y +TE N ++ N+D ++G+ GFNS I P YPIRL++V+ E+ RD G+ I C+ GE G LVG++ + DP+ +FDGYV + AT KKI H +F KGDSA+ SGD+L+ D+ GY YF+DR GDTFRW+GENV T EVEGV++R+L TDV VYGV +PG+EG+AGMA +ADP ++D + EL + YARP F+RL ++ T TFK +K +L+ EGF+P + DRL+F + + G Y L+
Sbjct: 68 LRRHQRAGHTIPRIFQAVVQRQPERLALVDAGTGECWTFAQLDAYSNAVANLFRQLGFAPGDVVAIFLEGRPEFVGLWLGLAKAGMEAALLNVNLRREPLAFCLGTSGAKALIFGGEMVAAVAEVSGHLGKSLIKFCSGDLGPEGILPDTHLLDPLLKEASTAPLAQIPSKGMDDRLFYIYTSGTTGLPKAAIVVHSRYYRMAAFGHHAYRMQAADVLYDCLPLYHSAGNIIGVGQCLIYGLTVVLRKKFSASRFWDDCIKYNCTVVQYIGEICRYLLKQPVREAERRHRVRLAVGNGLRPAIWEEFTERFGVRQIGEFYGATECNCSIANMDGKVGSCGFNSRILPHVYPIRLVKVNEDTMELLRDAQGLCIPCQAGEPGLLVGQINQQDPLRRFDGYVSESATSKKIAHSVFSKGDSAYLSGDVLVMDELGYMYFRDRSGDTFRWRGENVSTTEVEGVLSRLLGQTDVAVYGVAVPGVEGKAGMAAVADPHSLLDPNAIYQELQKVLAPYARPIFLRLL--PQVDTTGTFKIQKTRLQREGFDP-RQTSDRLFFLDLKQGHYLPLN 632 The following BLAST results are available for this feature:
BLAST of TCONS_00020634 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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