TCONS_00020643 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020643
Unique NameTCONS_00020643
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020643 ID=TCONS_00020643|Name=TCONS_00020643|organism=Clytia hemisphaerica|type=transcript|length=2404bp
GCAATAGCGATGAGTTTGAATGCAAACTTGACGGAACATGTGTCAGCAAG
AATGCGACTTGTGATGGAAAGAAAGATTGCAAAGATGCAGCAGATGAAAA
GAAAAGCGCTGGTTGCTCATTATCACCGAACGTTGTGATCGAAAAAGAGA
ATCTGGGAATCTCGTCTATCGCCATCAAATACCACAAACTGGAACGTGTG
GCCAATCAAATCGTGTTCACACTTACCACAAAAGAAGGATCTTTCTTACA
AGAAGAAGTCGTTAAAGGAGGAGATGTTTTGAAAGATGGCGTGGTCACAT
TCACTAAAGGAGTGAAAGCGAACTCAGAATACAAAGTCAAGGCAGTGGTT
TATAATTTCATTGGCAAGAATAAGGGAACGGTTTTGGAGATCGAGACACC
AGAAAAGAATGCACCAGCAGGCAAGCCACAAAAGATCGAGTTCAAAACAA
CAGAAAACGAAGAATCATCCAGCGTCCAAGTGTCATGGAAAGCACCCTTC
GTCACCGGTGGAAAAGCGAAAAACCAACTCAAATATAAAATACGAGTCTG
TATAGACGGTACCGAAGATtgcaatgacgtcatcagcgaGGAAGGCTCCA
CAGAGAGATTGGTTGATGGATTGAAACCTGACACGCAGTACCGCTTCAAA
ATCTCCGTCTTTTCTGGCGAAGATGAACGAGGCGATGAACAAAAAGCAAG
TTATAAAACTTTAGAGAAAGACACGTGTAAGGATGAAACTTACTATCGCT
GTCCAATCAAATGTTTGAATCCCAATCGTGTATGTGACGGAATCATTGAT
TGCATCGATCGATCTGATGAATCCAAAGCTGCCAAATGCTCTGCACCAGA
GAAGATAGAGAAAGTCAATGTCGAAGCTTCATGGAATTCGTTGACTTTCA
AATGGGAGGAGCCAGCCAACAACCCAATTGAATACCATCTCACTATGAAA
TGCACTGTCAACGATGTAGAATCTCCTTTGGTTGAAACCACGATTCCCAA
GAAGGAGCAATCCTACACCTTTGAAGGGTTGACAGAAAATGAAGACAAAG
CAACTTGTGAATTTGGAATCATTCCAAGTAATTTGATTGGAGAAGCAAAA
CAGTTCAAAGGTGTTTACAAGACCAAAACCTTAGGAACACCATCAAAACC
GAAAGAAAGTAAAGTGACCAAAGTTGATGGTTTTGAAACGAAGCAAGTCA
ACCTAGAATGGGAAGCTccttccaaccttggaaatgcACGTGCCAAAGAA
ATCAAATACAAATTACAATGGTGCAGAACGGAAGAAGATTGCAAAGATAA
GACTGTCGATGGGCAATCTGCGACATTGAAAGATTTGAAGCCTGGGACTG
AGTATGATGTGGAAGTCACTGCAATCAACCCACTTGGAAAATCTGGTGAA
CCATTGAAATTCGTATTCTCAACTGCTGATAAAGACACACTTCCATCACC
GCCACAAAACGTCAAAGTCACCAAACACCCGGATCATCCAAACCAGAAAG
CCATTGTGCAATGGGAAACACCAAAAGACAAAAATGGCCttgaaaaactt
caaatcaaataCAGAATCGAATACTGTATAAAACCTGTCAAGGATTGTCG
CATAATTGAAATTGACACAGGAACTCAAAACTACACTATTGTTGATATGG
AAGGTGGACAATCGTATGGTATCAGAGTGGCCGCTTTGGGACGAAGTGGT
GCTTTTGGAGATTATTCTGCTAAATACTTCCATACAACTGAAGGATCAGC
CAGTTCAGGCTTAGCATCATGGGAAATTGCTTTGATCGTGGTCGCCATAC
TTTTAATCATTGTCATCATTCTTGCACTTGTCATCCGAGCTGTTTACAAA
TCTCGATCTGCCAAGTCATATGAATCTACCGGTGGAAACGaaaaagcaaa
aatgaatggaGGATATCAAGCTGatgaaaaagtttaaagtgaaaCATTCA
ATACTGCAGTGGACTTGGAAATAGACTTATGAAAAGAAGAATTCAactca
aaataaatttcaaagaacAAAATGACTTGActtaataaaattaaaaacat
aatttagaGTTCAAAAGAATTCAGATCTAGATTGGACATTGCCTttcttg
aaagaaaatacaaaataactcAAATTCTTTTCAATCGTATTATCCCTTTT
TAGCCctatttcattcaaaataatcaattatttgaatttgaattttaggA
GTTGCTGGAAATTTACTCcgttttttattattatttcatGACATAAACAT
GACATGAGTTTGCTAAAAGTAAAACGAAAGAAAACACAAAACATTGTATA
TATGATAATTCTattattttactatttttattatttttatattgagTCTA
AAtacatttttgaagtttctcatttttatacttATTGTTCacctttaatt
tttt
Run BLAST on NCBI

transcript from alignment at sc0000359:53226..58483-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020643 ID=TCONS_00020643|Name=TCONS_00020643|organism=Clytia hemisphaerica|type=transcript|length=5258bp|location=Sequence derived from alignment at sc0000359:53226..58483- (Clytia hemisphaerica)
GCAATAGCGATGAGTTTGAATGCAAACTTGACGGAACATGTGTCAGCAAG
AATGCGACTTGTGATGGAAAGAAAGATTGCAAAGATGCAGCAGATGAAAA
GAAAAGCGCTGGTTGCTGTAAGTGTGTTTTCAAGTCTGTTTTCTTTGTTC
TCTTAAAGAAGATTTGTTAAATGGTATAACGCACGATAAACAACAAAGTG
AAGGGTACCAGAAGTTAACTTTGACACTCAAAATCATTATTATATACTAC
TGAGCCAAAATTACATTTGACCATTCTAAAATTGATTGTTAAACACGTTC
CAGTGTATGCAAGGCTTTATAACGCTACTAGTCTGTTCCATGTAATATCC
TGGTGCCATCAAGGACGCCGATGATACACTGGGTACGAGGTTAAAAACAA
AGGTTAGGCACAGAACAGTAAAAGTTAACTTTACCACTACAAGAGATGAT
TATATTTTATAAAGCCAAGAAATTGAACTAAGTTACTCCCTAAAGAACAA
TTATTCAATAGTTCTATTTAACCCTAAGAACTAAAAGGGGGGCACATAGT
GCCTTTGTGCCCCCCTCTCAGTAGGTAGGGTTAAACCATCCATCTCATGT
TTTACTAATCTGAAATGTACTTTCCTTCCCATAGCATTATCACCGAACGT
TGTGATCGAAAAAGAGAATCTGGGAATCTCGTCTATCGCCATCAAATACC
ACAAACTGGAACGTGTGGCCAATCAAATCGTGTTCACACTTACCACAAAA
GAAGGATCTTTCTTACAAGAAGAAGTCGTTAAAGGAGGAGATGTTTTGAA
AGATGGCGTGGTCACATTCACTAAAGGAGTGAAAGCGAACTCAGAATACA
AAGTCAAGGCAGTGGTTTATAATTTCATTGGCAAGAATAAGGGAACGGTT
TTGGAGATCGAGACACCAGAAAAGAATGGTGAGTTATTGAAATGAACCGA
TAAAAAAATATCAATCCGCAAAGACAGAAATGGGCTAAACTTTTCCAGGT
TTTGATCTAGATGCATTCATTTTAGCAGCAAAATTCAATAAATTTTCAGT
TAATTTTGCCTCCATCCAATTAAATCATTGAACACATCCAAACACACTTT
AAGTCAATATCTCCATTTCTCTGTCTCTCGCCAACACAGCACCAGCAGGC
AAGCCACAAAAGATCGAGTTCAAAACAACAGAAAACGAAGAATCATCCAG
CGTCCAAGTGTCATGGAAAGCACCCTTCGTCACCGGTGGAAAAGCGAAAA
ACCAACTCAAATATAAAGTGAGTGAACTTCATTTTTCATTTTTAAAAAAT
CTAGAAGGAATCTGTTTGACAAAAAACTATAGCAAACAGAGAGCCAAATA
AGAAAAAAAAGTCTACTTTATGGCAACAAAACGCAACAAAATACAAATAT
CATAACAATTTTCTTTCTGCTACCATCTTTAGATACGAGTCTGTATAGAC
GGTACCGAAGATTGCAATGACGTCATCAGCGAGGAAGGCTCCACAGAGAG
ATTGGTTGATGGATTGAAACCTGACACGCAGTACCGCTTCAAAATCTCCG
TCTTTTCTGGCGAAGATGAACGAGGCGATGAACAAAAAGCAAGTTATAAA
ACTTTAGAGAAAGGTATGGTTCGCTTTGTTTATCAATTCATCCCGATTCA
CATAGGGTCCAGCCCCCAGCGTTTTTCAGGGGGAGACTAAGCTTCTTTTC
TTTTCGGACTGAGACACAAAAAGATATTCCCAAAAACATTTCAAACTTCA
GCCTCATAATAAAATGCTTTCACTGACAATAATAATGATGATTTTATTTC
AGACACGTGTAAGGATGAAACTTACTATCGCTGTCCAATCAAATGTTTGA
ATCCCAATCGTGTATGTGACGGAATCATTGATTGCATCGATCGATCTGAT
GAATCCAAAGCTGCCAAATGCTGTAAGTGAAAAATGCATCAATGATAAAA
TTGAATTCAATTCATGATATGCAACCTTTACAATGTCTTCTATTTCTAAC
ATTTCATCACGAACCCAACAGCTGATTGGTTGCTAGTGATGTATTGACTG
ATTTTACGTCACTTACAACCAATCAGCTGTTAGATCTATGGTGTGATGTT
GAAGACATTGCAGTGATGCATATCATGAATTGAAGAATATATTTGGGTCA
TAAACCTCTGCAATGTCTTCTGACATTAAGTCACTATTGCAACAGCTGAC
TGGTTGTAAGTGACGTGTTGGGCAGAAAAGCCAGAATTTGTGATGATAAA
TTTGTGAAGCCATTGCAGGTGCATATCGTGAAAACCTTAATGAAATTTGA
GCTGCTACTTTTGGATCCGAGTCGAACTATATATCGAACTAAAAAAAACA
CACCATAAGGCAAGATAGGAATGTTAAAGAAACCAAAAACTGCAATAATC
TTGAAAGTAATGGGTGAGTTTTGAAAAAGTTATTTTAATAAATCTTATCA
ATTTGTTTTCCAGCTGCACCAGAGAAGATAGAGAAAGTCGATGTCGAGGC
TTCATGGAATTCGTTGACTTTCAAATGGGAGGAGCCAGCCAACAACCCAA
TTGAATACCATCTCACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGGAATGTTAAAGAAACCAAAAACT
GCAATAATCTTGAAAGTAATGGGTGAGTTTTGAAAAAGTTATTTTAATAA
ATCTTATCAATTTGTTTTCCAGCTGCACCAGAGAAGATAGAGAAAGTCAA
TGTCGAAGCTTCATGGAATTCGTTGACTTTCAAATGGGAGGAGCCAGCCA
ACAACCCAATTGAATACCATCTCACTATGAAATGCACTGTCAACGATGTA
GAATCTCCTTTGGTTGAAACCACGATTCCCAAGAAGGAGCAATCCTACAC
CTTTGAAGGGTTGACAGAAAATGAAGACAAAGCAACTTGTGAATTTGGAA
TCATTCCAAGTAATTTGATTGGAGAAGCAAAACAGTTCAAAGGTGTTTAC
AAGACCAAAACCTTAGGTAAGGACCTTCCAAATTAATTTGAATCGCATAA
CATCTGAGCAAAGCAAGGAGGTTCTGATATTTCTTTTAATAAAAAACATT
TAGAGATATTAAAACCATAAAACATTCTAAATAGCGAAAACATTCTAAAT
AGCGAACAAGTTAGTTCTAAGTTAGCCAGAAATAAGACGAAAACCTGAGA
TACCAGGTAGAAAACTATCTCACATCTTCTGCTTCATAGGAACAATTCTG
TTCTAAGTTATCAAGAAATAAGACAAAAACCTGAGACAGAAGTTCGTCTA
CTACGAACTAGTGTAATAGCAACGAACCGATAGCACAGTTGGGAGAGCAA
TCGCCCGGCAAGCGAGAGGTCGTGGGTTCAATTCCCACTCGATTCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTTCAATTCC
CACTCGATTCGTTACCTTTGAGAAAACTGGGAAGTACATTAGTGCAGGAT
CCGTTGATTCATTACCTATAAGTAATACGCACTTGATTTCACACTGAGAC
AGAAGATTATCTCAAATCTTCTTTTTCTTCGTAGGAACACCATCAAAACC
GAAAGAAAGTAAAGTGACCAAAGTTGATGGTTTTGAAACGAAGCAAGTCA
ACCTAGAATGGGAAGCTCCTTCCAACCTTGGAAATGCACGTGCCAAAGAA
ATCAAATACAAATTACAATGGTGCAGAACGGAAGAAGATTGCAAAGATAA
GACTGTCGATGGGCAATCTGCGACATTGAAAGATTTGAAGCCTGGGACTG
AGTATGATGTGGAAGTCACTGCAATCAACCCACTTGGAAAATCTGGTGAA
CCATTGAAATTCGTATTCTCAACTGCTGATAAAGACAGTAAGTAAACCAC
TCATAATTTCTATTAAGATTTAAAATCATCATAACTTCAAAATATCATCG
ATAGGAAACTCTTACTTTAATTAATACTTGGCACGGTTAGATGAGCACAC
TCGTTCAATTGAATTTTATTACAATTTTTTCTTTCATTGTAGCACTTCCA
TCACCGCCACAAAACGTCAAAGTCACCAAACACCCGGATCATCCAAACCA
GAAAGCCATTGTGCAATGGGAAACACCAAAAGACAAAAATGGCCTTGAAA
AACTTCAAATCAAATACAGAATCGAATACTGTATAAAACCTGTCAAGGAT
TGTCGCATAATTGAAATTGACACAGGAACTCAAAACTACACTATTGTTGA
TATGGAAGGTGGACAATCGTATGGTATCAGAGTGGCCGCTTTGGGACGAA
GTGGTGCTTTTGGAGATTATTCTGCTAAATACTTCCATACAACTGAAGGT
TAGTAAACTATCCATATTTGCAGTCCTCAAAATCAGTGTTTGAGTTTTCT
ATACAATTAATATCCAATATTGAGATACATTTACCTTCAAAAATAATAGA
TTTAACAATGCAAAAGATTAACTACCCACTTCTGTTTGATTTATCAGGAT
CAGCCAGTTCAGGCTTAGCATCATGGGAAATTGCTTTGATCGTGGTCGCC
ATACTTTTAATCATTGTCATCATTCTTGCACTTGTCATCCGAGCTGTTTA
CAAATCTCGATCTGCCAAGTCATATGAATCTACCGGTGGAAACGAAAAAG
CAAAAATGAATGGAGGATATCAAGCTGATGAAAAAGTTTAAAGTGAAACA
TTCAATACTGCAGTGGACTTGGAAATAGACTTATGAAAAGAAGAATTCAA
CTCAAAATAAATTTCAAAGAACAAAATGACTTGACTTAATAAAATTAAAA
ACATAATTTAGAGTTCAAAAGAATTCAGATCTAGATTGGACATTGCCTTT
CTTGAAAGAAAATACAAAATAACTCAAATTCTTTTCAATCGTATTATCCC
TTTTTAGCCCTATTTCATTCAAAATAATCAATTATTTGAATTTGAATTTT
AGGAGTTGCTGGAAATTTACTCCGTTTTTTATTATTATTTCATGACATAA
ACATGACATGAGTTTGCTAAAAGTAAAACGAAAGAAAACACAAAACATTG
TATATATGATAATTCTATTATTTTACTATTTTTATTATTTTTATATTGAG
TCTAAATACATTTTTGAAGTTTCTCATTTTTATACTTATTGTTCACCTTT
AATTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011580XLOC_011580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020643-exon-sc0000359-1575043694:58367..58483TCONS_00020643-exon-sc0000359-1575043694:58367..58483Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1575043694:57556..57849TCONS_00020643-exon-sc0000359-1575043694:57556..57849Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1575043694:57217..57344TCONS_00020643-exon-sc0000359-1575043694:57217..57344Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1575043694:56871..57051TCONS_00020643-exon-sc0000359-1575043694:56871..57051Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1575043694:56562..56681TCONS_00020643-exon-sc0000359-1575043694:56562..56681Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1575043694:55418..55711TCONS_00020643-exon-sc0000359-1575043694:55418..55711Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1575043694:54497..54799TCONS_00020643-exon-sc0000359-1575043694:54497..54799Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1575043694:54036..54341TCONS_00020643-exon-sc0000359-1575043694:54036..54341Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1575043694:53226..53886TCONS_00020643-exon-sc0000359-1575043694:53226..53886Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1510915933:58367..58483TCONS_00020643-exon-sc0000359-1510915933:58367..58483Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1510915933:57556..57849TCONS_00020643-exon-sc0000359-1510915933:57556..57849Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1510915933:57217..57344TCONS_00020643-exon-sc0000359-1510915933:57217..57344Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1510915933:56871..57051TCONS_00020643-exon-sc0000359-1510915933:56871..57051Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1510915933:56562..56681TCONS_00020643-exon-sc0000359-1510915933:56562..56681Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1510915933:55418..55711TCONS_00020643-exon-sc0000359-1510915933:55418..55711Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1510915933:54497..54799TCONS_00020643-exon-sc0000359-1510915933:54497..54799Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1510915933:54036..54341TCONS_00020643-exon-sc0000359-1510915933:54036..54341Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1510915933:53226..53886TCONS_00020643-exon-sc0000359-1510915933:53226..53886Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1491911889:58367..58483TCONS_00020643-exon-sc0000359-1491911889:58367..58483Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1491911889:57556..57849TCONS_00020643-exon-sc0000359-1491911889:57556..57849Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1491911889:57217..57344TCONS_00020643-exon-sc0000359-1491911889:57217..57344Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1491911889:56871..57051TCONS_00020643-exon-sc0000359-1491911889:56871..57051Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1491911889:56562..56681TCONS_00020643-exon-sc0000359-1491911889:56562..56681Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1491911889:55418..55711TCONS_00020643-exon-sc0000359-1491911889:55418..55711Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1491911889:54497..54799TCONS_00020643-exon-sc0000359-1491911889:54497..54799Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1491911889:54036..54341TCONS_00020643-exon-sc0000359-1491911889:54036..54341Clytia hemisphaericaexon
TCONS_00020643-exon-sc0000359-1491911889:53226..53886TCONS_00020643-exon-sc0000359-1491911889:53226..53886Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000359supercontigsc0000359:53226..58483 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.145751	0	0.142896	0.0159881	0.129584	0	0.111732	0.0671738	0	0.168759	0.245086	0.146663	16.585	13.749	0.236201	0.676783	0.110491	0.12567	0.278507	0	0.0210191	0.0275937	0	0	0	0	0.0261387	0.0452608	0.093342	1.07554e-09
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020643 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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