TCONS_00020650 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020650
Unique NameTCONS_00020650
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020650 ID=TCONS_00020650|Name=TCONS_00020650|organism=Clytia hemisphaerica|type=transcript|length=515bp
ACCATATTATCTGTTTGTTCTTCATGATAAAGAAGAGGTCGATCTAACTT
GTGGTTGATAAACACAGGTGTGTTCTGCCCTTGGAAATACATGGCTGCAA
ATTTCTCGAAAGTGAATTCCTTCAAATCTTCAAACGTCTCTCCTGGAAGC
TCCGTGCTTCCTTCACTGAGAATGTACTGTTCACGTGCTACTGTTAGATC
ACCGAACGCTTTCGGAACTTTCGTCGGCTGGCTGTTTCCGGTTGATTCAG
AGTTTCCGGGTAAGAAACCAAATATTTGGTCGACAACTTCAGAATCGTCG
ACGTCGTCATCTCGTTCGTGACGGTGACGTTCTTCTGCTTGATTAATGAC
GTCTTTTTTGTGTTCGAGTTCTTGACGTTTTTTCTGTTCGTCTTGTTCCA
TTTGACGTTGTAAAATGACGACACGCTCCTATGAGAATGACGGATGTCAC
ATTattaaaaatggtggaaaagttAAAGTTTAATCCCCTTAACTCCCAAA
GCCTTTCTTCCCAAC
Run BLAST on NCBI

transcript from alignment at sc0000359:197990..198564-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020650 ID=TCONS_00020650|Name=TCONS_00020650|organism=Clytia hemisphaerica|type=transcript|length=575bp|location=Sequence derived from alignment at sc0000359:197990..198564- (Clytia hemisphaerica)
ACCATATTATCTGTTTGTTCTTCATGATAAAGAAGAGGTCGATCTAACTT
GTGGTTGATAAACACAGGTGTGTTCTGCCCTTGGAAATACATGGCTGCAA
ATTTCTCGAAAGTGAATTCCTTCAAATCTTCAAATGTTTCTCCTGGGNAC
ATGGCTGCAAATTTCTCGAAAGTGAATTCCTTCAAATCTTCAAACGTCTC
TCCTGGAAGCTCCGTGCTTCCTTCACTGAGAATGTACTGTTCACGTGCTA
CTGTTAGATCACCGAACGCTTTCGGAACTTTCGTCGGCTGGCTGTTTCCG
GTTGATTCAGAGTTTCCGGGTAAGAAACCAAATATTTGGTCGACAACTTC
AGAATCGTCGACGTCGTCATCTCGTTCGTGACGGTGACGTTCTTCTGCTT
GATTAATGACGTCTTTTTTGTGTTCGAGTTCTTGACGTTTTTTCTGTTCG
TCTTGTTCCATTTGACGTTGTAAAATGACGACACGCTCCTATGAGAATGA
CGGATGTCACATTATTAAAAATGGTGGAAAAGTTAAAGTTTAATCCCCTT
AACTCCCAAAGCCTTTCTTCCCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011582XLOC_011582Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020650-exon-sc0000359-1575043694:198475..198564TCONS_00020650-exon-sc0000359-1575043694:198475..198564Clytia hemisphaericaexon
TCONS_00020650-exon-sc0000359-1575043694:197990..198414TCONS_00020650-exon-sc0000359-1575043694:197990..198414Clytia hemisphaericaexon
TCONS_00020650-exon-sc0000359-1510915933:198475..198564TCONS_00020650-exon-sc0000359-1510915933:198475..198564Clytia hemisphaericaexon
TCONS_00020650-exon-sc0000359-1510915933:197990..198414TCONS_00020650-exon-sc0000359-1510915933:197990..198414Clytia hemisphaericaexon
TCONS_00020650-exon-sc0000359-1491911889:198475..198564TCONS_00020650-exon-sc0000359-1491911889:198475..198564Clytia hemisphaericaexon
TCONS_00020650-exon-sc0000359-1491911889:197990..198414TCONS_00020650-exon-sc0000359-1491911889:197990..198414Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000359supercontigsc0000359:197990..198564 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0982606	1.84611	1.02063	0	1.44074	0.795217	2.4787	3.29618	0.0417636	0	1.24671	0	0	0.421485	0	1.41046	2.16704	0.093366	0	0	0.89398	0	0	0	0	1.36565	0.0889714	0.464558	0	0.582137
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020650 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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