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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020652 ID=TCONS_00020652|Name=TCONS_00020652|organism=Clytia hemisphaerica|type=transcript|length=1687bpRun BLAST on NCBI protein sequence of TCONS_00020652-protein >TCONS_00020652-protein ID=TCONS_00020652-protein|Name=TCONS_00020652-protein|organism=Clytia hemisphaerica|type=polypeptide|length=517bp MVDKEKKFLLAVDFGSTSLVACIFDLKTNLLVKASTKVPYIHLPEGGLEIRun BLAST on NCBI transcript from alignment at sc0000359:276319..293387- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020652 ID=TCONS_00020652|Name=TCONS_00020652|organism=Clytia hemisphaerica|type=transcript|length=17069bp|location=Sequence derived from alignment at sc0000359:276319..293387- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000359:276319..293387- >TCONS_00020652 ID=TCONS_00020652|Name=TCONS_00020652|organism=Clytia hemisphaerica|type=CDS|length=27972bp|location=Sequence derived from alignment at sc0000359:276319..293387- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020652 vs. Swiss-Prot (Human)
Match: GLPK5 (Putative glycerol kinase 5 OS=Homo sapiens GN=GK5 PE=2 SV=2) HSP 1 Score: 351.673 bits (901), Expect = 1.639e-113 Identity = 191/509 (37.52%), Postives = 287/509 (56.39%), Query Frame = 3
Query: 72 FLLAVDFGSTSLVACIFDLKTNLLVKASTKVPYIHLPEGGLEINPEELWDAFVNTMKNALKKAEISALNIKAFGFCTQRGTFMLWNKNNGEPYTNFISWQDNRCRNVVDRMNHCWTKKAINVFGTIMYTLLRQTRFLLMKAINFEANQASMKLIHFFDDNPDIKQAAYEGDVLFGTIDTYIIWRLSKRKLHLTDISCASGTAMFDPYLRKWSDICPLLFDVSLSVFPELTDTSGHILDVPEEIFGASFPLTSVVADTQATVFGLNGFNAGDACAVLGTGSFLMVNTGNYCHASVKGVYPQIGWQIKDEVALICEGNITGIAPSIEWAREIGLYENVNELSDFVKTVEGTDGMYFIPAFNGLSAPYRDPFACTGFIGIKRNGTKVQMARAVCEGIAFRFLEMYNVMREETHIPFEPVIRLCGGISKNDFIMELISSLADCTIERAYNHDTSXXXXXXXXXXXXXVWKDKEEMMQHTQKPTIIKPDPILKQRYLPIYKEWKTAAKRCLKWY 1598
F+L +D GS+ + ++D + + KV ++ G +EI+P+ LW FV +K A+K A I I G TQR TF+ WNK G + NFISWQD R +V N+ K + +++ R R F Q S++L+ + ++++A E + FGTIDT+++++L+K ++ TD S AS T +FDPY WS + L + LS+ P + DTS + V EEIFG P+ ++VAD Q+ +FG F GD +GTG+FL +NTGN + G YP IGW+I EV + E N +I+WA+++ L+ + E K++E ++G+ F+P+F+GL AP DP+AC F+G+K + +K + RA+ E IAFR ++Y +M++E HIP IR GG+ KN F+M++ S L + I+R + D SCLGAA LAGLA G W DKEE+ + Q + KP Q Y + W A KR + WY
Sbjct: 20 FVLGLDVGSSVIRCHVYDRAARVCGSSVQKVENLYPQIGWVEIDPDVLWIQFVAVIKEAVKAAGIQMNQIVGLGISTQRATFITWNKKTGNHFHNFISWQDLRAVELVKSWNNSLLMKIFHSSCRVLHFFTRSKRLFTASLFTFTTQQTSLRLVWILQNLTEVQKAVEEENCCFGTIDTWLLYKLTKGSVYATDFSNASTTGLFDPYKMCWSGMITSLISIPLSLLPPVRDTSHNFGSVDEEIFGVPIPIVALVADQQSAMFGECCFQTGDVKLTMGTGTFLDINTGNSLQQTTGGFYPLIGWKIGQEVVCLAESNAGDTGTAIKWAQQLDLFTDAAETEKMAKSLEDSEGVCFVPSFSGLQAPLNDPWACASFMGLKPSTSKYHLVRAILESIAFRNKQLYEMMKKEIHIPVRK-IRADGGVCKNGFVMQMTSDLINENIDRPADIDMSCLGAASLAGLAVGFWTDKEELKKLRQSEVVFKPQKKC-QEYEMSLENWAKAVKRSMNWY 526 The following BLAST results are available for this feature:
BLAST of TCONS_00020652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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