TCONS_00020660 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020660
Unique NameTCONS_00020660
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length239

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020660 ID=TCONS_00020660|Name=TCONS_00020660|organism=Clytia hemisphaerica|type=transcript|length=239bp
AGCCAATCCGGAGAAGTTCCAGATGTTATTTCCAGGTACTAAAAATGCAA
ATATATCTATTGACATAGGAAATTTTTCACTAATATCTTCTGAGAATGCT
CTTTTTCTTGGTGTTACTATCGACAGTGCTTTGTCATTTTATACTCATAT
TCAGGATCTATGTAAGAAAGCCTCTCAAAAAACTAAATCTATCCTGAGAA
TGAGATCATATTTGAACCAAGATCAGGCAGACTTATTAT
Run BLAST on NCBI

transcript from alignment at sc0000359:135584..135822

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020660 ID=TCONS_00020660|Name=TCONS_00020660|organism=Clytia hemisphaerica|type=transcript|length=239bp|location=Sequence derived from alignment at sc0000359:135584..135822 (Clytia hemisphaerica)
ATAATAAGTCTGCCTGATCTTGGTTCAAATATGATCTCATTCTCAGGATA
GATTTAGTTTTTTGAGAGGCTTTCTTACATAGATCCTGAATATGAGTATA
AAATGACAAAGCACTGTCGATAGTAACACCAAGAAAAAGAGCATTCTCAG
AAGATATTAGTGAAAAATTTCCTATGTCAATAGATATATTTGCATTTTTA
GTACCTGGAAATAACATCTGGAACTTCTCCGGATTGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011589XLOC_011589Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020660-exon-sc0000359-1491911889:135584..135822TCONS_00020660-exon-sc0000359-1491911889:135584..135822Clytia hemisphaericaexon
TCONS_00020660-exon-sc0000359-1510915933:135584..135822TCONS_00020660-exon-sc0000359-1510915933:135584..135822Clytia hemisphaericaexon
TCONS_00020660-exon-sc0000359-1575043694:135584..135822TCONS_00020660-exon-sc0000359-1575043694:135584..135822Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000359supercontigsc0000359:135584..135822 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.82808	0	3.10476	0	4.93053	0	4.70056	7.70107	1.54049	0.150434	4.63022	4.26121	0.607898	0.631308	1.98041	0.556989	0.686165	2.10989	0.971643	1.01675	7.06995	4.81702	2.09604	2.8584	0	0	2.50666	2.67517	5.07256	6.20176
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020660 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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