TCONS_00020661 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020661
Unique NameTCONS_00020661
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020661 ID=TCONS_00020661|Name=TCONS_00020661|organism=Clytia hemisphaerica|type=transcript|length=812bp
tatgtaaattcaAAATCGTGATTAATGAAAGATATCGACTGCTTCGCTAG
TTTTCAAGGTCAAATTTTATTCGTACTAGtttctgaatgaaaaaaacaca
ccCTTTATCGTGGATCCAACGTGATTCTCCGCCATTTCAAAACTGGATAA
TTTATGTGTCTAGTTGGAAATAGTCGCCAGAAATATTTTTCCTAATTTTC
TAATCACGCATGGCCAATAAACCTAACCTTATATTTAATCTAAAGATCAT
CATGAAATATAAGTTTCATTGAGATTGTTTGCTCTCCAATCTTTCTTTAA
ATGAAGACGAATGCCTGTCTGTCTCCTTTGACACTTCATATAAAAACTCG
TTTCTCTCCAACAATCAACCAAGCGCTTATGAAAAAGTTCGACGGAAAAT
CATTCTTCAATTCGACgaagttttaaaagttttgtagTAGAGGAAAAAAG
CataatttattttgaagaaaacacAATGTTCAAGGCGATTAGTATTTTCT
TGGCATTATTTGCGGGATTATTGCTACCAAGCGTGAATACTCGCGCCATG
CAAACCAACAAAAAACTATTATTGGATTCAATTGGAAGACGGTATTTCCA
TgacaaccaaaacaaagatggtagcatGGTTATGGATGAGAAGAGAAACG
CCAGCCTTCAACATCCACCTACAAGTTCACTGAAAGAAATcacttctttt
tgttttgtgcgTATCAAATATGTGTGTAAAAATGTCTGTAGGTTTCACAT
TTGTAAAAAATTATGTGTTCCTTATAAAGTTTTAGATTGTATTGCCATTA
AAGGAAATAAAA
Run BLAST on NCBI

protein sequence of TCONS_00020661-protein

>TCONS_00020661-protein ID=TCONS_00020661-protein|Name=TCONS_00020661-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MFKAISIFLALFAGLLLPSVNTRAMQTNKKLLLDSIGRRYFHDNQNKDGS
MVMDEKRNASLQHPPTSSLKEITSFCFVRIKYVCKNVCRFHICKKLCVPY
KVLDCIAIKGNK
Run BLAST on NCBI

transcript from alignment at sc0000359:205862..206673

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020661 ID=TCONS_00020661|Name=TCONS_00020661|organism=Clytia hemisphaerica|type=transcript|length=812bp|location=Sequence derived from alignment at sc0000359:205862..206673 (Clytia hemisphaerica)
TTTTATTTCCTTTAATGGCAATACAATCTAAAACTTTATAAGGAACACAT
AATTTTTTACAAATGTGAAACCTACAGACATTTTTACACACATATTTGAT
AcgcacaaaacaaaaagaagtgATTTCTTTCAGTGAACTTGTAGGTGGAT
GTTGAAGGCTGGCGTTTCTCTTCTCATCCATAACCatgctaccatctttg
ttttggttgtcATGGAAATACCGTCTTCCAATTGAATCCAATAATAGTTT
TTTGTTGGTTTGCATGGCGCGAGTATTCACGCTTGGTAGCAATAATCCCG
CAAATAATGCCAAGAAAATACTAATCGCCTTGAACATTgtgttttcttca
aaataaattatGCTTTTTTCCTCTActacaaaacttttaaaacttcGTCG
AATTGAAGAATGATTTTCCGTCGAACTTTTTCATAAGCGCTTGGTTGATT
GTTGGAGAGAAACGAGTTTTTATATGAAGTGTCAAAGGAGACAGACAGGC
ATTCGTCTTCATTTAAAGAAAGATTGGAGAGCAAACAATCTCAATGAAAC
TTATATTTCATGATGATCTTTAGATTAAATATAAGGTTAGGTTTATTGGC
CATGCGTGATTAGAAAATTAGGAAAAATATTTCTGGCGACTATTTCCAAC
TAGACACATAAATTATCCAGTTTTGAAATGGCGGAGAATCACGTTGGATC
CACGATAAAGggtgtgtttttttcattcagaaaCTAGTACGAATAAAATT
TGACCTTGAAAACTAGCGAAGCAGTCGATATCTTTCATTAATCACGATTT
tgaatttacata

Coding sequence (CDS) from alignment at sc0000359:205862..206673

>TCONS_00020661 ID=TCONS_00020661|Name=TCONS_00020661|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0000359:205862..206673 (Clytia hemisphaerica)
TTTATTTCCTTTAATGGCAATACAATCTAAAACTTTATAAGGAACACATA
ATTTTTTACAAATGTGAAACCTACAGACATTTTTACACACATATTTGATA
cgcacaaaacaaaaagaagtgATTTCTTTCAGTGAACTTGTAGGTGGATG
TTGAAGGCTGGCGTTTCTCTTCTCATCCATAACCatgctaccatctttgt
tttggttgtcATGGAAATACCGTCTTCCAATTGAATCCAATAATAGTTTT
TTGTTGGTTTGCATGGCGCGAGTATTCACGCTTGGTAGCAATAATCCCGC
AAATAATGCCAAGAAAATACTAATCGCCTTGAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011590XLOC_011590Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020661-proteinTCONS_00020661-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020661-exon-sc0000359-1491911889:205862..206673TCONS_00020661-exon-sc0000359-1491911889:205862..206673Clytia hemisphaericaexon
TCONS_00020661-exon-sc0000359-1510915933:205862..206673TCONS_00020661-exon-sc0000359-1510915933:205862..206673Clytia hemisphaericaexon
TCONS_00020661-exon-sc0000359-1575043694:205862..206673TCONS_00020661-exon-sc0000359-1575043694:205862..206673Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000359supercontigsc0000359:205862..206673 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0588354	0	0.799397	1.30348	0	0	0	0	0	0	0	0	0	0	0	0	1.23669	0.362162	0.250173	0	6.54182	8.15753	7.21817	9.44489	3.79014	4.22826	0.080675	0.258296	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020661 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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