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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020680 ID=TCONS_00020680|Name=TCONS_00020680|organism=Clytia hemisphaerica|type=transcript|length=2742bpRun BLAST on NCBI protein sequence of TCONS_00020680-protein >TCONS_00020680-protein ID=TCONS_00020680-protein|Name=TCONS_00020680-protein|organism=Clytia hemisphaerica|type=polypeptide|length=616bp MQLPEDDEDNEEQALWIKHSQGQYDDASNGASIDAGNENKRTQPWFLLPARun BLAST on NCBI transcript from alignment at sc0000363:203291..216856+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020680 ID=TCONS_00020680|Name=TCONS_00020680|organism=Clytia hemisphaerica|type=transcript|length=13566bp|location=Sequence derived from alignment at sc0000363:203291..216856+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000363:203291..216856+ >TCONS_00020680 ID=TCONS_00020680|Name=TCONS_00020680|organism=Clytia hemisphaerica|type=CDS|length=29616bp|location=Sequence derived from alignment at sc0000363:203291..216856+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020680 vs. Swiss-Prot (Human)
Match: GTR12 (Solute carrier family 2, facilitated glucose transporter member 12 OS=Homo sapiens GN=SLC2A12 PE=2 SV=1) HSP 1 Score: 345.51 bits (885), Expect = 2.941e-106 Identity = 220/573 (38.39%), Postives = 351/573 (61.26%), Query Frame = 1
Query: 223 IKHSQGQYDDASNGASIDAGNENKRTQPW------FLLPASVTVAALGGVLFGYDVGIISGAILLLREEFNLTCIQQEXXXXXXXXXXXXSSFVGGFFLDQFGRKTTIILNAFLFLIGALVLSFANXXXXXXXXXXXXXXAVALSAVGDCVYISEIAPPKKRGLLVSXXXXXXXXXXXXAYFVNYILIDSKNGWRYMFGISAIPALGQAIGMAFLPKSPRWLLLKGQEEKAMQIAATLWPNLNVRLEIDRMKTSLSREQSYSFLDLFSSKDNMRMRMMIGCSVILFQQLTGQPTVLYYAPVLFKRLGFNMNTSATLATIGLGIVKVVFTMGTLLSVDKLGRRKFLLVGATIMTISLITLSAVTEPFQ-NGNEQPACHDYIGTQKVHSHLLXXXXXXXXXCTIEHFNNTIIDGIKN-KTLTHKKLGNSSSIIKKTLCRNSTKNKTNLRTDHDNDDNDAM---GSIPGSVKYTCLFALMLFVIGYAVGYGPMSWLILTEIFPTAIKGRAASVATSVNWGTNIVISLTFLDVLGSLG-PFLTFLCYSVIGVVSIIFLYHIVPETKGKSLEEISEHL 1905
+++++G G +++ R PW F +SVT AA+ G+L GY++GIISGA+L ++ L+C +QE+VV+ L+IG L++S GG +D++GR+T IIL++ L +G+LVL + + + I+GR+ +G +++LS++ CVYI+EIAP +RGLLVSLNEL I +G+L AY NY + +GW+YMFG+ + QAI M FLP SPR+L++KGQE A ++ L + E+ +K+SL E YSF DLF SKDNMR R+MIG +++ F Q+TGQP +L+YA + K +GF N +A+LA+ G+G+VKV+ T+ L VD +G + FL +G+++M SL+T+ V N H+ I Q + ++ + NNT+ D K + + L + + K R T + + L + + + G +P +K+ L +L+++V +++G GPM WL+L+EIFP I+GRA ++ +S+NWG N++ISLTFL V +G P++ F+ Y+++ + S++F+ +PETKG SLE+IS L
Sbjct: 4 VENTEGPSLLNQKGTAVETEGSGSRHPPWARGCGMFTFLSSVT-AAVSGLLVGYELGIISGALLQIKTLLALSCHEQEMVVSSLVIGALLASLTGGVLIDRYGRRTAIILSSCLLGLGSLVLILSLSYTVLIVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILSAYISNYAFANVFHGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVMKGQEGAASKVLGRLRALSDTTEELTVIKSSLKDEYQYSFWDLFRSKDNMRTRIMIGLTLVFFVQITGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVISTIPATLLVDHVGSKTFLCIGSSVMAASLVTMGIVNLNIHMNFTHICRSHNSI-NQSLDESVIYGPG------NLSTNNNTLRDHFKGISSHSRSSLMPLRNDVDK---RGETTSASLLNAGLSHTEYQIVTDPGDVPAFLKWLSLASLLVYVAAFSIGLGPMPWLVLSEIFPGGIRGRAMALTSSMNWGINLLISLTFLTVTDLIGLPWVCFI-YTIMSLASLLFVVMFIPETKGCSLEQISMEL 564 The following BLAST results are available for this feature:
BLAST of TCONS_00020680 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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