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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020688 ID=TCONS_00020688|Name=TCONS_00020688|organism=Clytia hemisphaerica|type=transcript|length=1095bp
gaGAAAAGTAGTgactaagaaaataaatatgccACCACCCAAAAAAGCAA
AGACAGAAGAACCAGATTCTTCAGATGAATTCGAAGAGAGAATTGTTAAA
TATCACCCGAGAAGCTCAATCTCATCCCTCACATTGCTACTTTTCATCGT
ATTCTCTCTGGCAACCGCTTACGAAAAGCTGGGATGGAAtgataaaaata
ccaaattacAGATTAAAAACAGTACAATTAAATCGAATCTAGATAATCAA
ACTTTAGACTTGAGTAGAGACAAtaatgctgatgtcagcaaaaataGTAA
GAATAAAGACGCTCGACGAAAAGAACGTACTCGAAAATCGGAATcggtaa
aaagtaaaattaatagTATCACGAACGCTTATGATCGCAAAATATTATCA
GAAATCAATGACGGTGAACATTACTTCAATAGGGGTCAATACCCAGAATG
CGTTTCGCACttcgaaaaacttttaaaacagtATCCGCATAGCCCGCGTG
CCATGTACGGCCAGGCTAAGTGTCTAGACAAACTGTCTGAAAAGATGCGA
AGTAACGAACTGCTTTCGAAATCAATTGACGCCTATGGTGAGGTTGCTAA
GCAACCAGGGATCACTAACGAACTCTTAAAACAATCATNATGCGAAGTAA
CGAACTGCTTTCGAAATCAATTGACGCCTATGGTGAGGTTGCTAAGCAAC
CAGGGATCACTAACGAACTCTTAAAACTATCATTATTGAAACAATCTGAG
CGGCTTATATTTTTTGGTAAAGGACGAGATTCAGTCAACGTTTTAGCAAA
GCTGGCAGAGCACCTACCGAAAGATGTTGATGTTCTGAATAAATTGGGAA
CCTCGTATTTGATTATGGGCTCCAATCGTAAAGCATTTGATATTCACAAA
AAGGTCATATCAGTGGACCCAGGGAATGGTATTGCAAACGCAAATATCGG
TTACATCCTGAAAGCGCTACAGAAGTATCAAGAAGCTATTCCTTATCTGG
AGGCTGGAATTGAAAGCGAAGATCCGGAGACTAATCAAGCCAAATTTTAT
GTTTTCCTTGGTGAGGCATACACCAAGTCTGGTCGAACAGATGAC Run BLAST on NCBI protein sequence of TCONS_00020688-protein >TCONS_00020688-protein ID=TCONS_00020688-protein|Name=TCONS_00020688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
RKVVTKKINMPPPKKAKTEEPDSSDEFEERIVKYHPRSSISSLTLLLFIV
FSLATAYEKLGWNDKNTKLQIKNSTIKSNLDNQTLDLSRDNNADVSKNSK
NKDARRKERTRKSESVKSKINSITNAYDRKILSEINDGEHYFNRGQYPEC
VSHFEKLLKQYPHSPRAMYGQAKCLDKLSEKMRSNELLSKSIDAYGEVAK
QPGITNELLKQSXCEVTNCFRNQLTPMVRLLSNQGSLTNS Run BLAST on NCBI transcript from alignment at sc0000363:31697..33757- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020688 ID=TCONS_00020688|Name=TCONS_00020688|organism=Clytia hemisphaerica|type=transcript|length=2061bp|location=Sequence derived from alignment at sc0000363:31697..33757- (Clytia hemisphaerica)
GAGAAAAGTAGTGACTAAGAAAATAAATATGCCACCACCCAAAAAAGCAA
AGACAGAAGAACCAGGTAAGGCTTTATTTACATTTGCACCATTTTGATTA
ATTTGGTGTTCGATTTTGTCTTTTTTATGTAAGATGAATTTGCTCTATTG
CTCTAAGTGTGAAAGACTGACAATTTTGAGTCAGCCAATCAGTGGCGGAT
TCGGGCAAGGGAGTTGTAAAACTATGACAGATGAGTATTTCTTTTATTAG
CCATACTCCTTATAATGAGATGAAGACTGTCAGTCGTAAATTTTGAAATC
CCTGAGGTCAGCCACACCCCATATCAGTCTTAAAAAGGATGATCTTACAA
TCCGAATCCCAATGAGATTTTATTTAGAAATTTTATTATGTTTATATCAA
CAACGTCTGACAGTTTCAGATTTTCTTTGCCTCTTCGACCTGGGCAATTA
ACCATTTAAATGTCACATACCTTCCCACGTTCGATAAAAAATAGTTAATC
ACGATTTTTTTTCAAATCATAGATTCTTCAGATGAATTCGAAGAGAGAAT
TGTTAAATATCACCCGAGAAGCTCAATCTCATCCCTCACATTGCTACTTT
TCATCGTATTCTCTCTGGCAACCGCTTACGAAAAGCTGGGATGGAATGAT
AAAAATACCAAATTACAGATTAAAAACAGTACAATTAAATCGAATCTAGA
TAATCAAACTTTAGACTTGAGTAGAGACAATAATGCTGATGTCAGCAAAA
ATAGTAAGAATAAAGACGCTCGACGAAAAGAACGTACTCGAAAATCGGAA
TCGGTAAAAAGTAAAATTAATAGTATCACGAACGCTTATGATCGCAAAAT
ATTATCAGAAATCAATGACGGTGAACATTACTTCAATAGGGGTCAATACC
CAGAATGCGTTTCGCACTTCGAAAAACTTTTAAAACAGTATCCGCATAGC
CCGCGTGCCATGTACGGCCAGGCTAAGTGTCTAGACAAACTGTCTGAAAA
GATGCGAAGTAACGAACTGCTTTCGAAATCAATTGACGCCTATGGTGAGG
TTGCTAAGCAACCAGGGATCACTAACGAACTCTTAAAACAATCATNATGC
GAAGTAACGAACTGCTTTCGAAATCAATTGACGCCTATGGTGAGGTTGCT
AAGCAACCAGGGATCACTAACGAACTCTTAAAACTATCATTATTGAAACA
ATCTGAGCGGCTTATATTTTTTGGTAAAGGACGAGATTCAGTCAACGTTT
TAGCAAAGCTGGCAGAGCACCTACCGAAAGATGTTGATGTTCTGAATAAA
TTGGGAACCTCGTATTTGATTATGGGCTCCAATCGTAAAGCATTTGATAT
TCACAAAAAGGTGAAACTCGTTAATTATTTAAAAAAAAAACTATTTGAAG
CCGTCAATGGGCCTGAGCGAAATTGAAATTTCCCTAGGCCAGATAGATCC
CTTTTATTATCTTTACCCATTTTCTTTTGCTAGAAATGAGGACAGATTTC
GAAAACAATGAAACATACAACCTGTTTTAAGCATATTATCCCATCCTTCC
CTCACTGACCCGAGGGAGGTTTCTCGTAAGTGGAGTTCGAATAAAGGAGT
TATATATCCAATGAAAGGGGAGAATATAATCCTTTTTCAATATCTTTTGT
TTTCACCTAGAATATTGCTTCAATCCCAGTTTTATTATCGAGAAATAATA
GTTTTTCAGTCTATACAGGGACAAGTCAATCTCATCCCCGTGTATTCCAG
GCTTTTTTTACGTTAACAATAGACGCTTGAGAATATTTGGCACTATCAGT
AAAAATAAAAGAAACCGATAACACGATAATGGTGTCAGCCTTGTAAACTA
ACCCTCGTTTTATTCACAGGTCATATCAGTGGACCCAGGGAATGGTATTG
CAAACGCAAATATCGGTTACATCCTGAAAGCGCTACAGAAGTATCAAGAA
GCTATTCCTTATCTGGAGGCTGGAATTGAAAGCGAAGATCCGGAGACTAA
TCAAGCCAAATTTTATGTTTTCCTTGGTGAGGCATACACCAAGTCTGGTC
GAACAGATGAC Coding sequence (CDS) from alignment at sc0000363:31697..33757- >TCONS_00020688 ID=TCONS_00020688|Name=TCONS_00020688|organism=Clytia hemisphaerica|type=CDS|length=1446bp|location=Sequence derived from alignment at sc0000363:31697..33757- (Clytia hemisphaerica)
ATTCTTCAGATGAATTCGAAGAGAGAATTGTTAAATATCACCCGAGAAGC
TCAATCTCATCCCTCACATTGCTACTTTTCATCGTATTCTCTCTGGCAAC
CGCTTACGAAAAGCTGGGATGGAATGATAAAAATACCAAATTACAGATTA
AAAACAGTACAATTAAATCGAATCTAGATAATCAAACTTTAGACTTGAGT
AGAGACAATAATGCTGATGTCAGCAAAAATAGTAAGAATAAAGACGCTCG
ACGAAAAGAACGTACTCGAAAATCGGAATCGGTAAAAAGTAAAATTAATA
GTATCACGAACGCTTATGATCGCAAAATATTATCAGAAATCAATGACGGT
GAACATTACTTCAATAGGGGTCAATACCCAGAATGCGTTTCGCACTTCGA
AAAACTTTTAAAACAGTATCCGCATAGCCCGCGTGCCATGTACGGCCAGG
CTAAGTGTCTAGACAAACTGTCTGAAAAGATGCGAAGTAACGAACTGCTT
TCGAAATCAATTGACGCCTATGGTGAGGTTGCTAAGCAACCAGGGATCAC
TAACGAACTCTTAAAACAATCATNATGCGAAGTAACGAACTGCTTTCGAA
ATCAATTGACGCCTATGGTGAGGTTGCTAAGCAACCAGGGATCACTAACG
AACTCTTAAAGAAAAGTAGTGACTAAGAAAATAAATATGCCACCACCCAA
AAAAGCAAAGACAGAAGAACCAGATTCTTCAGATGAATTCGAAGAGAGAA
TTGTTAAATATCACCCGAGAAGCTCAATCTCATCCCTCACATTGCTACTT
TTCATCGTATTCTCTCTGGCAACCGCTTACGAAAAGCTGGGATGGAATGA
TAAAAATACCAAATTACAGATTAAAAACAGTACAATTAAATCGAATCTAG
ATAATCAAACTTTAGACTTGAGTAGAGACAATAATGCTGATGTCAGCAAA
AATAGTAAGAATAAAGACGCTCGACGAAAAGAACGTACTCGAAAATCGGA
ATCGGTAAAAAGTAAAATTAATAGTATCACGAACGCTTATGATCGCAAAA
TATTATCAGAAATCAATGACGGTGAACATTACTTCAATAGGGGTCAATAC
CCAGAATGCGTTTCGCACTTCGAAAAACTTTTAAAACAGTATCCGCATAG
CCCGCGTGCCATGTACGGCCAGGCTAAGTGTCTAGACAAACTGTCTGAAA
AGATGCGAAGTAACGAACTGCTTTCGAAATCAATTGACGCCTATGGTGAG
GTTGCTAAGCAACCAGGGATCACTAACGAACTCTTAAAACAATCATNATG
CGAAGTAACGAACTGCTTTCGAAATCAATTGACGCCTATGGTGAGGTTGC
TAAGCAACCAGGGATCACTAACGAACTCTTAAAGAAAAGTAGTGACTAAG
AAAATAAATATGCCACCACCCAAAAAAGCAAAGACAGAAGAACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020688-exon-sc0000363-1575043694:33693..33757 | TCONS_00020688-exon-sc0000363-1575043694:33693..33757 | Clytia hemisphaerica | exon |
| TCONS_00020688-exon-sc0000363-1575043694:32398..33235 | TCONS_00020688-exon-sc0000363-1575043694:32398..33235 | Clytia hemisphaerica | exon |
| TCONS_00020688-exon-sc0000363-1575043694:31697..31888 | TCONS_00020688-exon-sc0000363-1575043694:31697..31888 | Clytia hemisphaerica | exon |
| TCONS_00020688-exon-sc0000363-1510915933:33693..33757 | TCONS_00020688-exon-sc0000363-1510915933:33693..33757 | Clytia hemisphaerica | exon |
| TCONS_00020688-exon-sc0000363-1510915933:32398..33235 | TCONS_00020688-exon-sc0000363-1510915933:32398..33235 | Clytia hemisphaerica | exon |
| TCONS_00020688-exon-sc0000363-1510915933:31697..31888 | TCONS_00020688-exon-sc0000363-1510915933:31697..31888 | Clytia hemisphaerica | exon |
| TCONS_00020688-exon-sc0000363-1491911889:33693..33757 | TCONS_00020688-exon-sc0000363-1491911889:33693..33757 | Clytia hemisphaerica | exon |
| TCONS_00020688-exon-sc0000363-1491911889:32398..33235 | TCONS_00020688-exon-sc0000363-1491911889:32398..33235 | Clytia hemisphaerica | exon |
| TCONS_00020688-exon-sc0000363-1491911889:31697..31888 | TCONS_00020688-exon-sc0000363-1491911889:31697..31888 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000363 | supercontig | sc0000363:31697..33757 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011990 | TPR-like_helical_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00020688 vs. Swiss-Prot (Human)
Match: ASPH (Aspartyl/asparaginyl beta-hydroxylase OS=Homo sapiens GN=ASPH PE=1 SV=3) HSP 1 Score: 108.227 bits (269), Expect = 2.274e-25 Identity = 65/147 (44.22%), Postives = 93/147 (63.27%), Query Frame = 1
Query: 643 RSNELLSKSIDAYGEVAKQPGITNXXXXXXXXXXXXXXIFFGKGRDSVNVLAKLAEHLPKDVDVLNKLGTSYLIMGSNRKAFDIHKKVISVDPGNGIANANIGYILKALQKYQEAIPYLEAGIESEDPETNQAKFYVFLGEAYTKSG 1083
RSNE+L +I+ Y EVA P + +LLKLSL ++S+R F G R S+ L +L + P D + N LG YL++G N A ++++V+SV P +G A + G+ILKA K E+IPYL+ GIES DP T+ +FY LG+A + G
Sbjct: 393 RSNEVLRGAIETYQEVASLPDVPADLLKLSLKRRSDRQQFLGHMRGSLLTLQRLVQLFPNDTSLKNDLGVGYLLIGDNDNAKKVYEEVLSVTPNDGFAKVHYGFILKAQNKIAESIPYLKEGIESGDPGTDDGRFYFHLGDAMQRVG 539 HSP 2 Score: 80.8777 bits (198), Expect = 1.708e-16 Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 2
Query: 380 YDRKILSEINDGEHYFNRGQYPECVSHFEKLLKQYPHSPRAMYGQAKCLDKLSEKMRSNELLSKSIDAYGEVAKQPGITNELLKQS 637
+D+ I +E++ E RG+ E V+ F++L+++YP SPRA YG+A+C D L+EK RSNE+L +I+ Y EVA P + +LLK S
Sbjct: 337 FDKTIKAELDAAEKLRKRGKIEEAVNAFKELVRKYPQSPRARYGKAQCEDDLAEKRRSNEVLRGAIETYQEVASLPDVPADLLKLS 422
The following BLAST results are available for this feature:
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