TCONS_00020690 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020690
Unique NameTCONS_00020690
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length910

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020690 ID=TCONS_00020690|Name=TCONS_00020690|organism=Clytia hemisphaerica|type=transcript|length=910bp
agaaaagaatACGAGAATTCCAGAATAATTCAAAAATCGAGATCgttaac
aatgaaaatacaaccATATTGGAAATCCCAACATCACCATGTCCTCCAGA
ATATGAATGCTCCATCGACACTGGACATTTCACCGTTATATTCTTGAATG
ATGCTCCATTTGAAAATATGACTGAGTATTTTATAAGGTTCCAGAATACA
ACTGTCAAAACTCAAGATAATATTGTAGGTCACATAGTTACCAGAAAAAC
TTGGAATTTTGTTTATCTTAGCTTCAAGGAAAAAgacaaagagacaataa
aagATTCTGATAGCTTCACCAGTAGCTGTGGTAAAGACACAATGACTTTG
AATCTGACCAAGAAATATTTACCAATTCCAAAAGAAAATGATGATTATGA
AATCTCGTGGCAAGATAATTCGTGTAATAAAACTCTGGATGATGGAGGAT
CACTAACTTTGAAAACAGGTTACACGAAATGTGGTACAACTTCTCACATa
gaagatgacgtcatcatcttcCGCAATAGAGTAACGATAAGACAGAAagg
caaaaaaatatcaaaggcACATTTGGAGGATGAATGGGAATATGGCAGTT
ATGTTGTCGAGTGCAAAATCCCCAATAATGTTAACATCAGCACAAGTGTT
CTGAATATTACGATGAAAGATACAATTTCATCAAGAACCTCCTCTAAtga
caaattcaaaatggaaatGAAGCTTTACGAATCGAATAAATACAGTACAC
CGCTCTCATACCCTGTGGTGAAGACACTTAATGACAGAATTCACATGAAG
ATTGAATTATTTTCAACTTCATCTTTGTCAATCTATCCACAAAATTGTTT
TACTACTCCAAGTCAAAACAGAAACCACCCTATGAAAGAGTTCTTAGTGA
AAGACAGGAT
Run BLAST on NCBI

transcript from alignment at sc0000363:48400..57791-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020690 ID=TCONS_00020690|Name=TCONS_00020690|organism=Clytia hemisphaerica|type=transcript|length=9392bp|location=Sequence derived from alignment at sc0000363:48400..57791- (Clytia hemisphaerica)
AGAAAAGAATACGAGAATTCCAGAATAATTCAAAAATCGAGATCGTTAAC
AATGAAAATACAACCATATTGGAAATCCCAACATCACCATGTCCTCCAGA
ATATGAATGCTCCATCGACACTGGACATTTCACCGTTATATTCTTGAATG
ATGCTCCATTTGAAAATATGACTGAGTATTTTATAAGGTTCCAGAATACA
ACTGTCAAAACTCAAGATAATATTGTAGGTCACATAGTTACCAGAAAAAC
TTGGAATTTTGTTTATCTTAGCTTCAAGGAAAAAGACAAAGAGACAATAA
AAGGTATGTTTTATCTACAAATACTCTTAGATTCCTGACTGTGTTCCTAG
TTAAATCTATCTGCTTATCAGGAGGTTTTCCAGACCTCAAAAATGAGTTT
TTCAGGATTTCCAAAGTTGACTGTAAGGGTCGAAATGAGAGGAAGTGGTG
AGAAGGAATTTTCAAAGAACTGGTCAATTTTTCACCGAAAAATAAAAATT
TTCTAAATTTGCTAAATTTTCACTGCACTGTAAGCCACTGTTGAGCCACA
CATATGGTCGATTGCCCTGAGAAGTGAGAAGATTTACCTCGCGGGTCCTT
TCTTATTCCAACCCAAGTTCATTTGACAAATTACCCCAACCTACCCTACT
TAGCACTATTAACATAAATATTCTTGGTGATCTCTGTGCCAGATATTTTG
TCTGTTGATTGATTATTTTTTTACAGCGAACTCAAAAGTAACTCACCCCT
GTCTCGGTGAACCAATAAAAGAATTTGAGCCAGTGAGGATAAAATAAAAG
AGACTTGATGAATGCCCAAAATGATCTTGTTTTTAATCCTGGGGGGGGGC
ACTTGATTTCTAAACGACGGCATGTTCCCCTAAAACATATGGCTTTCAAA
ATCAGACCCTTACAGTGCAGCCCTTGAGCAGTGAAAAGGTACCCTTACAG
TGCATTTTACTGAATGTTTCCGACCCTTACACTGTTACCGTGAATACCAC
AGGTCAAAATCATATATTGACGCTCAGCGCGCAATCAACGAAGACAAAAG
TAACCATGACGACCATCCAAGATCTTGGATGAAGTTCAAAGTTGATATTT
TTATTCCCGTCGTTGAAAACACAGCTTACAAAAAGTCATCAATGCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTCGAAAGAAACTCATTTCAATTAC
ACTTGGAGGTTTCTGGGGAATTCGTAAATAGTAAACTGCATACTGATACA
GTCTGTTAGACATTAATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATATTTGCTCTTC
ATCTTTGATTTTTTCTACAGTGATTAGATTGACACATGCGCGATAAAATT
TCTATTATTGGTCTTCAGAGGTTAATATATTCTTTGAACACTTAACCTCT
GATACTCAGGGTATTACATTGTAGTTGGTTACATATCATATTTTGCTGAA
GCCAGCTGAAAATGAGTCTGAGATGTCGATACATCGATGCCTTGTGCGAA
ACAAATCAAAATCGGTGCGAGTCAAAACTATAAAGATACGTCAGATTTTT
ACTGTCAGTAAAACATCAATCCAGCAGTCCCCAAATACACTCTTACAGTG
TATCCAGCTAAAAGAAGACCCTTGTACACGTTTTTTTTAAGAAACACACT
TTTAAGAAACATGAGGCTTAGAGTGCCTAAAAACTAAGAAACATCTAAGA
AACATGCCGAGCCTGAGAATGAGAAAATAACATTTTTTAATTCAGTTTCT
TTTTAACTTTCCAATCCAGCCTTCCATGAGGCTGATTACGTNAACATTTT
TTAATTCGGTTTTTTTTTTAAGAACCTTCCAATTCAACCTCCCATGAGGC
TGATTATGTCAAAAGGTTTAGAAACATGTAAGAAACATTTAAGGCCGATT
TCTTAAGAAACATTGAGGCTGCTTGGTAAAACTAGTTTCTTAAAAAAAAA
ACGTGTAGTGCACTCTATCAAAAGTACACCCTTATGCATTTCAAGGGTCT
CGAAGGACCTACCCTTAAGATTGTTTCCAGCTCTAATATCTAGCAGAGAT
TTTTTAGCTAGTAAGTTTATGGTAAGTTTCTCAAGCGGGGTGAGAGTTTA
GTATAGCTTTCTGATGGGAATGTAATTTCCAGGTATTTCCACTTAGGTAA
AATGGGTGTCAAGTAGATGCGACCCATAAAGATCCCTTTTTTACACTCTT
AAAAGTCCATTAGAGGACTAAATACAAAAAATTGATTCCCTAAAGCGTCT
TATATTGTCGTAGCTTTGTCAAAATTTTATAATTCCGTCTAACATTTTAG
TAAAATAATCTATTTGTCTTGTAAAGACGTAAAAAATTGGACAACATTCT
CAAAATTCAGTTTCTCTTAAGGGCTCTGACTATAGTCCAAAAATAGATTT
TGGTTTTTGAACACAAAAGTTATATTTCAGGTTCCTTAACACTTTCAACA
AAGAATTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
TAGTTTATCTAACAGAAAATGTATAACATGCCATAGTTTTGTTAGTTACA
TCAGTCAGAAAAGACATTTTAAACACGGCAATTATGAAAAATTCACTATG
GCCAGACCCCTTAAGTGTGGATTTCCGAACTTTGGCTCAGACATACCCGT
CGATTCGCTAACCTAAGTAGTAGCCCCTCCCCAAAAAAATATTCTTCCGA
CTTTCCGGTTTGTTAGGGCTCGATTGGATCTGTTTGAAAGAACCAAAGAT
TTCAAGGCGCTAAAATACCGAAAATAAACTAAGAGTTTTACCAATCATTC
TTTAGATTCTGATAGCTTCACCAGTAGCTGTGGTAAAGACACAATGACTT
TGAATCTGACCAAGAAATATTTACCAATTCCAAAAGAAAATGATGATTAT
GAAATCTCGTGGCAAGATAATTCGTGTAATAAAACTCTGGATGATGGAGG
ATCACTAACTTTGAAAACAGGTACTCTTTTAATTTTTATATGAGAAAGTT
TGCTCTAAACAGGTTTTTTTTTAATAAGAATAATGTGTATCCGTACTCAT
ATACATTATTGATTATTTTAGAAGAATTTTTACGGCCTTGAAGGCTGTAG
AACATTTTTTGTCTAACTCGTAGGAATTGGATTGGGTTTCATGGTCAAGC
AAACAAAAATCAACAGTGAGTCTTTCCAGCGAGATTTTAAGCCAAAAAGT
CAAAAAAATGCAAAAATTTGACAAACTTGACAAAATTCCACTTTTTTTAA
TTCTGACCGTTTTTTGACCATTTTTGGTCAACGAGGAGTGATCCAAGAAC
CTCCAAAATTGGCCCTGCTCTACTTGATTCTGTTCTCTAGCGAATTAATT
TGAAGTTTTACTACTGGGTACCTTTCTATCATTCAGGCAGGTCCGCGCAG
CGGGACGAAAGAAAGAAGAGACTCTAAGCAGGGGGGGGCACGCAGTTACT
ACAAGACAGTATGACACTTACTACCGTGGTGGCACTGTATTCCTAAGTTA
CGAAAACAGTTACTACACAGTGTAGTAACTGCTGTTTGGGGGTGGTGCCA
AACACTAAAACTAGCACTTTTGGTGTAGTAAGTGCTTATATTTTAATTCC
TTGTAAAGAACTTTCAAAATTTTTCACAAAAAATGAATTTTTTCGAAACA
ATTCTTTGTTAAAAAAAATATTTTGTTATAAATGGACGAAAAAAAATTTG
AAATTTTTCTCAGACCCAACTTTGAAATTATGCTTTCCCTAATTATCATT
AAAATGTTCTCAACAGCTGTTAACCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAAGGTGTAGTAACTGCAAAGGGTGGTGGTCCTGAAAAAAAGTG
TTGAAAAAGCACTTACTACACATCATGTCTTGTAGTAACTGCGTGCCCCC
CCCTGCTCTAAGCTATATCCATCGAACTCTAAACGAGCTTTTAACTCCTT
CTAGATCTAGAGAGATAAGCCTTTAAAGTTTGAACTAGTGACTTCCTTTT
AAAAACTTTTAAAAAATGACCGTGGTACTTAAAGGGTTAATAGAGAAGTA
TTATAATGAGAGTTGACTTCATTCTTATTTCAAACTCAGCGTTTAACGGG
GAGTCGACGCCAATTTTCAGTAAAGTGAGATATCTCATCGAATAGCAAGT
CTATCTGAATGAAGACTGCCTGAAACGGCACAAAACTGCGACTATCGGAT
AAATAGACTTATCTCTTTATTCTTGACGGAATAGTGACTTATGTATCACA
CCCCCTTCTCACAGACCCGGTAAGATTTTTTCAGCCAGTGGGAATAAAAA
TAACGGAGTGAAACTCGATGGGGATTGATATTATCATATTTTTTATGGTT
GGGGATTTCAATTCTTTTATTTTTAAGTCAGAAAATTCAATGGGGATAAG
AAAAATTGTAAATATTTTGCAGTGAGGATTGGTTCATTTGATTATTTTCA
ATTGGGATAAAAATTGAAGGAAATTTTTCCACCGGGGACGATATTTTAGC
CAATTTTTCCAGTGGGAAGGGTTTCCAGTGGGTCTGTGAGAAGTAGGTGT
TGTATCGGAGGATATCGAGCACGACGGTAAGTGAAGTCGACGCATAACAA
AGTCGATGGACATCAACTTTACGGCTCTATAAAGTTACAATTCTTCCTTT
CATATAGGTTACACGAAATGTGGTACAACTTCTCACATAGAAGATGACGT
CATCATCTTCCGCAATAGAGTAACGATAAGACAGAAAGGCAAAAAAATAT
CAAAGGCACATTTGGAGGATGAATGGGAATATGGCAGTTATGTTGTCGAG
TGCAAAATCCCCAATAATGTTAACATCAGCACAAGTGTTCTGAATATTAC
GATGAAAGATACAATTTCATCAAGAACCTGTTAGTACAAAGATATTATGA
TATGATATGAGCCTTCCTAAACGGGGAAAGGGTCCTACTCCTTCCGAAGA
AGGAATTCCTTCTTTTTCAAGTAGGCACAGATACTATAATGCATAGTGAT
GTCACTCGAACTACGCGGGAGAGAATAGAGCTCATGACGGGATATCACCC
ACACTCTTGTATCAGAGTAGTGGTACCCAATTCCCCTCACATGGTATGGG
CTGACCCGGGTGAAGGTGTGTCCACTTGCCAAGTGAACCCGTAGTGCTAT
ATTGTGAATCGAACTCGAACCTCCCAGAGTGATGACCACCACACCATTGC
GTCTTAATTAAGCAATTAACTATAACTATTAGGTGACAACCACAGATTTC
TGTAAAGCCCAAAGAGCTAGATGGCGTGCTTTAAGTTTTTCCAACTAAAA
AAGTGAATATCGCACGGCATTCTTTTCAGCCAAAGCACTCTATCTAGCCT
GGAATTTATAGAAATCTATGGTGACGACTTGACGGTGAAAAATTACAATC
TATTGAGATTTTTCGGCTTTTCACCTGCTTTGATACAACTTTGATATAGA
TTTCTTATATTTTCTTAATTAATTTTATTTCTTTATCTTTGAACCTTTGA
ACAGTACAAAAAATATTTAAATTACATTTCAGCCTCTAATGACAAATTCA
AAATGGAAATGAAGCTTTACGAATCGAATAAATACAGTACACCGCTCTCA
TACCCTGTGGTGAAGACACTTAATGACAGAATTCACATGAAGATTGAATT
ATTTTCAACTTCATCTTTGTCAATCTATCCACAAAATTGTTTTACTACTC
CAAGTCAAAACAGAAACCACCCTATGAAAGAGTTCTTAGTGAAAGACAGG
TAATGGTTTTGCTAACTTTATTACCTCAAGAGAAGAAATTTTCGCGGAAC
AAATTTTTGCGGAATTCAACTTCGCGGTTTTTGACAAATCAGCGAAATTC
AATTCTGCGAATGAATGAGTGATGACCTCCTAAGATCAAAGAATCTCTAC
AGTGAAAATGAAAGTTATAGCACTTTTCTACAAGATCTTCATTTTTTTCT
TCTTCATTTTCATCTTCATTTTTAGAATTTTTTAAAAGACTTTTTGATTT
TAAATTGTTTCACTCACAAATATCTCTCCAACGATACCAAATTTATGAAG
ATTGAAGAATTCCTTCAAAAGTTATTAGGTAAAAGAAAAAAGAGTGCACA
CTTATCGTGAATAGACTTTAGTTCCCGTTAAAATTAGTTCCCTTAAGGTA
GCGACAACTTCACACCATCGGCCGATCTGCTTTGTGATGCTTGTGGTGTT
TTTAGGTACAATATAAACATAAATCTACCTCCTATCCTGCTTTCTACCAA
ATATGGATTTCGAGGCCTATTGTATAATGGTTACCAATAAGATCTCTAGA
TACGTCGAAGCTATAGGAGCCGAATCCTTACTTGGCTCTGTAACTTCCCA
TGCGAAATTTATTATTTTCTAACTTCTTTATACCATTAGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011606XLOC_011606Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020690-exon-sc0000363-1575043694:57489..57791TCONS_00020690-exon-sc0000363-1575043694:57489..57791Clytia hemisphaericaexon
TCONS_00020690-exon-sc0000363-1575043694:52522..52686TCONS_00020690-exon-sc0000363-1575043694:52522..52686Clytia hemisphaericaexon
TCONS_00020690-exon-sc0000363-1575043694:49913..50134TCONS_00020690-exon-sc0000363-1575043694:49913..50134Clytia hemisphaericaexon
TCONS_00020690-exon-sc0000363-1575043694:49043..49259TCONS_00020690-exon-sc0000363-1575043694:49043..49259Clytia hemisphaericaexon
TCONS_00020690-exon-sc0000363-1575043694:48400..48402TCONS_00020690-exon-sc0000363-1575043694:48400..48402Clytia hemisphaericaexon
TCONS_00020690-exon-sc0000363-1510915933:57489..57791TCONS_00020690-exon-sc0000363-1510915933:57489..57791Clytia hemisphaericaexon
TCONS_00020690-exon-sc0000363-1510915933:52522..52686TCONS_00020690-exon-sc0000363-1510915933:52522..52686Clytia hemisphaericaexon
TCONS_00020690-exon-sc0000363-1510915933:49913..50134TCONS_00020690-exon-sc0000363-1510915933:49913..50134Clytia hemisphaericaexon
TCONS_00020690-exon-sc0000363-1510915933:49043..49259TCONS_00020690-exon-sc0000363-1510915933:49043..49259Clytia hemisphaericaexon
TCONS_00020690-exon-sc0000363-1510915933:48400..48402TCONS_00020690-exon-sc0000363-1510915933:48400..48402Clytia hemisphaericaexon
TCONS_00020690-exon-sc0000363-1491911889:57489..57791TCONS_00020690-exon-sc0000363-1491911889:57489..57791Clytia hemisphaericaexon
TCONS_00020690-exon-sc0000363-1491911889:52522..52686TCONS_00020690-exon-sc0000363-1491911889:52522..52686Clytia hemisphaericaexon
TCONS_00020690-exon-sc0000363-1491911889:49913..50134TCONS_00020690-exon-sc0000363-1491911889:49913..50134Clytia hemisphaericaexon
TCONS_00020690-exon-sc0000363-1491911889:49043..49259TCONS_00020690-exon-sc0000363-1491911889:49043..49259Clytia hemisphaericaexon
TCONS_00020690-exon-sc0000363-1491911889:48400..48402TCONS_00020690-exon-sc0000363-1491911889:48400..48402Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000363supercontigsc0000363:48400..57791 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0506102	0	0	0	14.168	10.621	15.4891	23.0765	4.96751	12.4949	0	2.20338	0	0	0	0	4.60417	13.9562	0	0	41.6307	34.3573	0.518836	2.34729	9.17848	4.10902	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020690 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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