TCONS_00020692 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00020692
Unique Name	TCONS_00020692
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1998

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000363:86679..92309-

transcript sequence

>TCONS_00020692 ID=TCONS_00020692|Name=TCONS_00020692|organism=Clytia hemisphaerica|type=transcript|length=1998bp
CTTGGAAACGATGACcgcttttcaaattttctccTTTTCTAAACCTCTGA
TAAAAACTGAATCATGGTACACAAAACAAATTTGAACGTGGTGGAATTTC
TACTTGAAATTGAGTGGGATCAGACAGTCAGATTGGTATATGAAATTCGA
GGCAGACTCTTTTCGAGAAGAAGCAAAGagaaaaataaataaaaatgact
AAGTTAATGCAATGGTTATTTTTGTTATCAATCTATGGAATTTTCTATGT
CACAGCTCTCACAGAAACATTACCATTAAGTCTTactgaaaatggaaaat
ttgtTGTAGCTATTtCTCCAATTATCCTTGTTGGATTATTTGGTATCTAT
TCAGTGTTTGTGATTTTATATCGAGTTGCAACTTTCAATGATTGTGAAAA
AGCGGCAGAAGAACTCAAAAAGcaAATCGTAGAAGCAAAGAAAGACTTAT
CATCGAAAGGACTTAAATTCGACTAAACTTTTCTCGATTGGTCATCTTTA
ACATTATTACTATATTATTATAGctacaatttttcaattttgtataTAAC
CAGTATAAGTATAAATAGGGTCATTTTAGgagttttttttgtcatttttt
tacgtttttggtgcaattttttttttactgtttaAGATTTCCTAGAAATT
GATGTCAAAATAAATACATTAGTTAAATTCTATTTACAATTTTAGTCTTC
GGTCTGAATGTCGTCCAAATAAATATCGGCAGTGTAaccttgattttgat
ttttgcccGATATTTGCTGCTTTGTAGAGTTGATATCTTGAAGTGCTTTA
AACTTCCGACTGTGAGCGGTAGGTTCCTGGAAATTCGAACTGGTGTCGAA
TAGGTTTAGGTGCAAAGAAAATATTATGATAGTACTCTCGAATTCTCCGA
CAATTTACAATATAAATCAAAGAAtttaatccaaagaaaaccatACCAAT
ACCAAAAATCCAATCTGAGATAATCAAATATTTAAGATATTCATTTGAGT
CACTTTCAATATCTCTTGTACTCAAATTGGTAgcaatataaaaacaaaat
acacatGTAGGTAAAAAGCATACAATGTAAGTGATTTGTAGTAAAGTCAC
TCTTTTGATAGGTTTCCATTTCCGTTCTTGGTCAACAATGTTCCCAGAAT
TGACTTTCCTTGATCTTTGAAATAAGGTGATTACAAGAATAATTGTTAAT
ATAGACCCCACTATAATAATAAAGCCACTATTGCAACCAGTGGCTAACCA
AAAAGCCTCATCTGTATTGACACCTCCATAGTAAACGACACAAAGTTCTG
CAGCTGGTACAATAATTGAGATTGTAATCTCAAAAAGAATTATGATATTc
ataatctttgttttgatctgtGTTAAAGGGTATTTTACGGAAATGAGCCG
AGTGAATGCTAGTGTGATTAGAAAAATTGAATCTGCTAGCGCCAGAATTT
CCAGTATGGTAACAACGATAAATTCAGCCATGCAGTTGTCGTTGTTAAAA
ATCTTAAAGTAAGCATAGATAGGTAGAGTCATACCAAACAATAATCCACA
AACTGACgaatgtaaaaacaacttttgagGGATTGGAAAGTTTCTTCTTG
TTTTGTAAAATCCGTAAATGACAATAATGTTTGATATGATGAGAAATATA
CAGAGgaataaataaaatgtaaataaaaatccTCTTTGCTGTTTCCAGAG
CTTTTGATTATCTCTATGTCCAAAAGTATCATTATGTATATGAAACAAGT
TGACTAATTGTCCATCCACTATTGTAcacttcattttaaaaatcgTAGTT
CAACTTTAATGTGTGTAGTGGTAATTCCTATCTTCCTGAACTTTTACTTT
ACATtataatttttctccttatcaATTCTTACACTTTGAGGTTAactcat
atttcaaaattttatgaattGACTAAAATTACAATTTCATACTTCAGAAC
ACTGactgaaaattaaattattgaTATTTCATTTTCGCCAAATCTTAC

Run BLAST on NCBI

transcript from alignment at sc0000363:86679..92309-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00020692 ID=TCONS_00020692|Name=TCONS_00020692|organism=Clytia hemisphaerica|type=transcript|length=5631bp|location=Sequence derived from alignment at sc0000363:86679..92309- (Clytia hemisphaerica)
CTTGGAAACGATGACCGCTTTTCAAATTTTCTCCTTTTCTAAACCTCTGA
TAAAAACTGAATCATGGTACACAAAACAAATTTGAACGTGGTGGAATTTC
TACTTGAAATTGAGTGGGATCAGACAGTCAGATTGGTATATGAAATTCGA
GGCAGACTCTTTTCGAGAAGAAGCAAAGGTATCTCTGCTTATTTTGAACA
TTTGAACTTATCTTTTTATCTTTGTTTTACCAAGATCAGAACTGGATTTC
AGAGGAATTGTTGTTGTTAACTATCTATATTTTATTGCTTTTCACTTTTC
GCCACTTCTTTTTTTACCCTCCTAAAAGTGCCTAGTTAGGGTCCCTAGCT
AAAAAAATCCAACTCTGACTCTTTGTCTTTGTAGGTAGTATACAGTACAG
TAGAAGAAGATTCCGTAAAAATGGATTGCCCGTTAAACCATGCCTTCGCC
CGAATTAGAGAATTCTGAACCCCTTGAAATCCCTAAGCAATTTCAACCGG
GGCGGGGAGCGGGCGTAAATTATAACCATGCAATTGCGCGCTTACGCCCT
CGGAACATAAGCGTGCAATTGAGAGGATTTCCCAGACTGTCAAAGTTGCC
ACGCGTAACGGGAAAAGACCGTTTACTTTCAAAACATACCTACCCACCTC
CTTTATAACGGTCTTTCATGATTTGACCAAAAGTTTACCAAAGTTTCCAT
TCCCGCTAAAATCAAAACAAACCGCCGGCTATAAAGGTCGCCATTTTCGG
AGGTTTACAACGGCCGAATTCCATCACAATTTTTAAACGGTATTTGTTTT
TAAAACTTTAAAACTCCCAAGGCAAGAATGTTATACTCTGAAATCACCCC
TAAATATTGCTCAGGAAAGGATTTTGGATAGCGTGCTAAAGGAAAAAGCG
AAGAAGTGAGAGCTACCGTAAGCGGTCTTTGATTTTTTCCTTGGAATTTT
TAGTGAAATTTCATTTTGGTCATCAATGTCAAAGCTAACTCTCAACATTC
TGATATACCTACCCATTAACGGTCTTTTCCCGTTTCGCATGGCGACTTTG
AATATGGACGTCGCCCCTAAATAATAATAATATACTCAAAAGCAATAATA
CCTCAAAAATAATAATACAATTCTATTTCCTTTATGTATGATGAAACAGG
TTATATTATGGCAGCAGAGCTGAAGTACTACACCTTAATTTAAACTTCCC
ACAGAAATGGCCCTAGAAAATGTGCGCTCCACCATCCACAGTTGTGTATA
AAATTGTTTGGGAGGTAAATAAACGCGTTTTTACCTGTGAGGGGTTAGGA
AGAGTGGGTTTTCAGCTTTTAACTTTTGATGATAGAGATCCACCGAATCA
AATTAAACGATGATCAATGGTATAAACATAATTATGCATGACATCACTTT
TATGATTAGGAGATATACCGTGAAATCGGGTAACTTGCATCAGTGGAGGC
TAACATGCATAGCCCGCAAATCCATGACCTGGCTGGTCATTAAAATACAA
AGTTAAATCAAAACAAACCTGATTTACAAAATTTGCAGGCTGTAAAATGT
ATCGTGAAGTTGGGTAACTTGCATCAGTGGAGGCTAACATGCATAGCCCT
CAAATGAATGATCTGGCTGGTCCTTAAAAAATACAAAGTTAAATCAAAAC
AAAAATGGTAGAGTAGAGCTGTGAGCTGAGCTGCGTAATTCATTTGTTTT
GAAATTTTGCTGCTTTGATTGGTCAGGCCCTCACTGTATCTTTTTTTGGC
AAAATAATATATAAAAAATATATGCTATTATCGAATGAAGTTAACGTGTT
TTATTTCAATACTAATAGTTTCACGCTGTGGAGACAATCATCAGTTGAAA
ATAAAATTTTAAAAAACTAGAGTTCGTTTTAAATGTTTACAAACAACAAT
GTACTGGCTTCTTTTGACAACAATTGATGTCAGTCTTTCAAGTCGTGTTG
TTTTAGTGTGAACTTGTTCACGTGGCGAAGTTCACGCGGCGGCAATTCAA
AATTAGTTTGTTTCTGGAATTCAACAGCTTTAGAAAGAAACCTTCCAGAC
TAGGGTTTTTCTCCTGCATGGCGACAGCAAAAAATAAGATGTGCTGATGT
GATTAGGGGTGTTGCTTGGGAGGGGGGAGGGCTCTTAAAAAGAGGTATTT
CTGTCTCAAAATTTAATCAATAAGATATATACCAAGGAAGTTTCCTTTAA
AATTTTGTGTACAATCTCTCTTAGAAGATAGACTTTGCTTTGGTCACGTT
TAAAGGATTTAATAAGTATGCTTCTTTTTTTTTCTTCAGAGAAAAATAAA
TAAAAATGACTAAGTTAATGCAATGGTTATTTTTGTTATCAATCTATGGA
ATTTTCTATGTCACAGCTCTCACAGAAACATTACCATTAAGTCTTACTGA
AAATGGAAAATTTGTTGTAGCTATTGTAAGTATTATGATTTTTTTTTAAA
TATTTTTATTTTTCTTGAATCTGCTGCAATAATGACTTTTGGGTATCTAA
AGTAATATAATAAGTTTAATTATTTCTGCACAAGGCCCGTTCAGTGTGTC
AGTCTAGAAAAAAGTGGAATAGATTTTTTTTATGTCAAATTTCTGAAAAC
TCGATACTCATCGGAGCTTAGAATAGTAAGTCCGATTGCATAAAATTGAT
TTTGTTTATCAATATATATTAAATTCCCAGGGTAATCAAAATTAGTTTTT
AAATGGAAATATTAAGTAATTAGGTCATAAATTTTCATGTAAATGACGAG
GATTTTGATTTGTATAAGTTTTGTTTTGTTCCGCTTTTTCCATGCACATT
CCATGCAGTATAGTATAGTTCAAATAGAACATTTTCTAATCAATTCATTT
TTTCTCTTTTCAGTCTCCAATTATCCTTGTTGGATTATTTGGTGTAAGTA
ATTTTCAAAAAACTTTACGTGGATTAATTTTCGCGATTTTCGTGAAATTT
AGTTCCTCGCGAAATATTTAAAATCTGAGTATTTGTCAAAAACCCCTAGG
AAAATGAAAGGAAATTAGGTAAAATAGAGGCTAATTTGCGAACTTTAATC
CACGCGCGAAAATTTTAGATTCTCAATTTGCGAAAGAAGTGCACGCGAAA
ATTAATTTGATCCATTTAACGCTTTAACTTTGAAACTATAATTTCACTGA
ATCAATCTCAGCGTATATTAAATCGTGATGTATATTCTTTAATAAAGTAC
AAGTGCTAACAATTTTTATTCTAAAAAATCTTAGATGTAACGTGAAGACA
TAATTGAATTATCTGTAAATGTTTTTCTCTACCTCTTTTAGATCTATTCA
GTGTTTGTGATTTTATATCGAGTTGCAACTTTCAATGATTGTGAAAAAGC
GGCAGAAGAACTCAAAAAGGTTAGAAATTGAATATGAACCCTTTTAAATT
TCAAGTGATCAATTTTGAATGAATTTTTGGTCAGAATTCTTAATATTGCT
TCATCTTGAAATTTCTTAATACTGATTCCCTTGAGGACGCTACGGACCGA
GTCTGAAACATGTCGGGAAAAATCAAAATATAATAGCCGCATTCTTTTTC
ACCGTCCAGCATACTGTTTCATCTTGTTAATATTTTGAATTTATTTTTTC
CCCATGGACTTTGTTTGAAACATTTTCGTTTTGGTTTTGGTAAATGTGAT
AAATGCCTCCCCCTCCGTTTGTTAATTTTCGACTTTTTCCAACTACAAGT
TTTTTTTTTATTAGAACATCTAACATTTTTGAAGCCTTCGGATGTTTGTA
ACTTTTTGAGTTTCAAGCCTAAAAATGTTCTTAACGTGTTCTTATTTTCC
CCATCTTTTATGTATTTTTTTCCATTTTCCTAAGAAATTGACTGTTTTAG
AGTCTGCAAAGCGTTAAAATGTTCTTAACTTGTTCTTAACATTTTTTCCA
TCGAAGTCTTATGTGAAAAACGTGTACGGTACATTTGTGTACGTGTACGG
CATTTGGTATATATAGGTTCTGTTCCGCTATTTTCAGGATACGCTATATT
TTACCAACGTTTATTAGATACTCAAGACCATATTCCTTTTTCTTTCATTT
TTTAGCAAATCGTAGAAGCAAAGAAAGACTTATCATCGAAAGGACTTAAA
TTCGACTAAACTTTTCTCGATTGGTCATCTTTAACATTATTACTATATTA
TTATAGCTACAATTTTTCAATTTTGTATATAACCAGTATAAGTATAAATA
GGGTCATTTTAGGAGTTTTTTTTGTCATTTTTTTACGTTTTTGGTGCAAT
TTTTTTTTTACTGTTTAAGATTTCCTAGAAATTGATGTCAAAATAAATAC
ATTAGTTAAATTCTATTTACAATTTTAGTCTTCGGTCTGAATGTCGTCCA
AATAAATATCGGCAGTGTAACCTTGATTTTGATTTTTGCCCGATATTTGC
TGCTTTGTAGAGTTGATATCTTGAAGTGCTTTAAACTTCCGACTGTGAGC
GGTAGGTTCCTGGAAATTCGAACTGGTGTCGAATAGGTTTAGGTGCAAAG
AAAATATTATGATAGTACTCTCGAATTCTCCGACAATTTACAATATAAAT
CAAAGAATTTAATCCAAAGAAAACCATACCAATACCAAAAATCCAATCTG
AGATAATCAAATATTTAAGATATTCATTTGAGTCACTTTCAATATCTCTT
GTACTCAAATTGGTAGCAATATAAAAACAAAATACACATGTAGGTAAAAA
GCATACAATGTAAGTGATTTGTAGTAAAGTCACTCTTTTGATAGGTTTCC
ATTTCCGTTCTTGGTCAACAATGTTCCCAGAATTGACTTTCCTTGATCTT
TGAAATAAGGTGATTACAAGAATAATTGTTAATATAGACCCCACTATAAT
AATAAAGCCACTATTGCAACCAGTGGCTAACCAAAAAGCCTCATCTGTAT
TGACACCTCCATAGTAAACGACACAAAGTTCTGCAGCTGGTACAATAATT
GAGATTGTAATCTCAAAAAGAATTATGATATTCATAATCTTTGTTTTGAT
CTGTGTTAAAGGGTATTTTACGGAAATGAGCCGAGTGAATGCTAGTGTGA
TTAGAAAAATTGAATCTGCTAGCGCCAGAATTTCCAGTATGGTAACAACG
ATAAATTCAGCCATGCAGTTGTCGTTGTTAAAAATCTTAAAGTAAGCATA
GATAGGTAGAGTCATACCAAACAATAATCCACAAACTGACGAATGTAAAA
ACAACTTTTGAGGGATTGGAAAGTTTCTTCTTGTTTTGTAAAATCCGTAA
ATGACAATAATGTTTGATATGATGAGAAATATACAGAGGAATAAATAAAA
TGTAAATAAAAATCCTCTTTGCTGTTTCCAGAGCTTTTGATTATCTCTAT
GTCCAAAAGTATCATTATGTATATGAAACAAGTTGACTAATTGTCCATCC
ACTATTGTACACTTCATTTTAAAAATCGTAGTTCAACTTTAATGTGTGTA
GTGGTAATTCCTATCTTCCTGAACTTTTACTTTACATTATAATTTTTCTC
CTTATCAATTCTTACACTTTGAGGTTAACTCATATTTCAAAATTTTATGA
ATTGACTAAAATTACAATTTCATACTTCAGAACACTGACTGAAAATTAAA
TTATTGATATTTCATTTTCGCCAAATCTTAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_011608	XLOC_011608	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000363	supercontig	sc0000363:86679..92309 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.2027	28.5628	45.0422	44.9674	6.89977	5.09303	26.4903	28.8576	14.238	12.9786	6.20828	6.815	2.67737	1.56145	3.43452	3.75827	6.71408	5.56946	1.64431	2.66921	6.78752	6.45309	14.6205	14.7185	1.74592	3.2494	6.17265	3.91775	8.8704	7.69199

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

Blast

[Close]

BLAST of TCONS_00020692 vs. Swiss-Prot (Human)
Match: DPM3 (Dolichol-phosphate mannosyltransferase subunit 3 OS=Homo sapiens GN=DPM3 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 6.960e-16
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 3

Query:  195 MTKLMQWLFLLSIYGIFYVTALTETLPLSLTENGKFVVAISPIILVGLFGIYSVFVILYRVATFNDCEKAAEELKKQIVEAKKDLSSKGLKF 470
            MTKL QWL+ L+I G  +V   T  L L L  + + V+   P  L+   G Y++  + YRVATF+DCE AA EL+ QI EA+ DL+ +GL+F
Sbjct:    1 MTKLAQWLWGLAILGSTWVALTTGALGLELPLSCQEVLWPLPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLARRGLRF 92

The following BLAST results are available for this feature:

BLAST of TCONS_00020692 vs. Swiss-Prot (Human)

BLAST of TCONS_00020692 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DPM3	6.960e-16	45.65	Dolichol-phosphate mannosyltransferase subunit 3 O...	[more]

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TCONS_00020692 (transcript) - C. hemisphaerica