TCONS_00020695 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020695
Unique NameTCONS_00020695
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020695 ID=TCONS_00020695|Name=TCONS_00020695|organism=Clytia hemisphaerica|type=transcript|length=244bp
CTtctgtcattttcattttccataaCGAGGGGTGGAGTACTTTATTGAGA
TCTGTACATTCCGTTATTAACAGAACACCTGCACAGTTTTTACACGAAAT
TGTTCTGGTGGATGACAAATCTGAAATGCAACATTTACACGAACCTTTAG
ATGAAGaattaaaaaaacctttttatcaatcgaaagtgaaagtggttcGC
AACAAAGAACGTGAAGGGTTGATCAGAGCCAGAAATAATGGAGC
Run BLAST on NCBI

transcript from alignment at sc0000363:161420..162237-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020695 ID=TCONS_00020695|Name=TCONS_00020695|organism=Clytia hemisphaerica|type=transcript|length=818bp|location=Sequence derived from alignment at sc0000363:161420..162237- (Clytia hemisphaerica)
CTTCTGTCATTTTCATTTTCCATAACGAGGGGTGGAGTACTTTATTGAGA
TCTGTACATTCCGTTATTAACAGGTATAATGTCATGAAATCTTCTATCAT
GGCAGTGTTACAATAGAGTCACACGTCACATCTAACACTACGAGTTCCAG
GCTGAATAATGTTCAAGCCTGCCAGTGCGTCTATACAGTGTAGCCTGGAA
AACTAAGCTAGTTTGATTCAATCATTAGGATAAATCTGATGGTAAGTTGT
GACTGAATAACTATTCAAAGGCAAACTTAAAATCAGTGTTACAATAGAGT
CACACGTCACATCTAACACTACGAGTTCCAGGCTGAATAATGTTCAAGCC
TGCCAGTGCGTCCATCCCCACAGTGAAGCCTAGAAATCTAAGCTAGTTTG
ATTCAGTCACCAGGATAAATCTGATGGTAAGTTGTGACTGAATAACTATT
CAAAGGCAAACTTAAAATCCGTAAATATGAAAAAATCTTTAAAGCACCGA
AAATGCTATATTGCCATTAGCCGTGTGTCCTAGCCTTGTGAATACGGGCT
TAGTTAACTAGGCTACATACAGTGATGTATTTAACGTCACTTACATTGTA
TAGCATTATGGGTATTAGAACTCTAACTATGTTTCCTTATCTTTCAGAAC
ACCTGCACAGTTTTTACACGAAATTGTTCTGGTGGATGACAAATCTGAAA
TGCAACATTTACACGAACCTTTAGATGAAGAATTAAAAAAACCTTTTTAT
CAATCGAAAGTGAAAGTGGTTCGCAACAAAGAACGTGAAGGGTTGATCAG
AGCCAGAAATAATGGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011609XLOC_011609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020695-exon-sc0000363-1575043694:162165..162237TCONS_00020695-exon-sc0000363-1575043694:162165..162237Clytia hemisphaericaexon
TCONS_00020695-exon-sc0000363-1575043694:161420..161590TCONS_00020695-exon-sc0000363-1575043694:161420..161590Clytia hemisphaericaexon
TCONS_00020695-exon-sc0000363-1510915933:162165..162237TCONS_00020695-exon-sc0000363-1510915933:162165..162237Clytia hemisphaericaexon
TCONS_00020695-exon-sc0000363-1510915933:161420..161590TCONS_00020695-exon-sc0000363-1510915933:161420..161590Clytia hemisphaericaexon
TCONS_00020695-exon-sc0000363-1491911889:162165..162237TCONS_00020695-exon-sc0000363-1491911889:162165..162237Clytia hemisphaericaexon
TCONS_00020695-exon-sc0000363-1491911889:161420..161590TCONS_00020695-exon-sc0000363-1491911889:161420..161590Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000363supercontigsc0000363:161420..162237 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
42.0795	36.0795	30.8059	35.021	108.328	71.2735	188.471	189.631	29.5918	50.0749	12.9849	15.5985	16.3232	4.24059	33.6875	38.9807	25.7661	21.3969	12.533	27.956	20.3272	19.2642	39.8262	43.8278	25.8964	48.9691	14.6979	4.88728	29.9663	43.2241
Blast
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BLAST of TCONS_00020695 vs. Swiss-Prot (Human)
Match: GALT7 (N-acetylgalactosaminyltransferase 7 OS=Homo sapiens GN=GALNT7 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.611e-24
Identity = 48/80 (60.00%), Postives = 61/80 (76.25%), Query Frame = 3 
Query:    3 SVIFIFHNEGWSTLLRSVHSVINRTPAQFLHEIVLVDDKSEMQHLHEPLDEELKKPFYQSKVKVVRNKEREGLIRARNNG 242
            SV+ +FHNEGWSTL+R+VHSVI RTP ++L EIVL+DD S  +HL E LDE +K   +   VKV RN+ REGLI+AR+ G
Sbjct:  210 SVVIVFHNEGWSTLMRTVHSVIKRTPRKYLAEIVLIDDFSNKEHLKEKLDEYIK--LWNGLVKVFRNERREGLIQARSIG 287
The following BLAST results are available for this feature:
BLAST of TCONS_00020695 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GALT71.611e-2460.00N-acetylgalactosaminyltransferase 7 OS=Homo sapien... [more]
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