|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020698 ID=TCONS_00020698|Name=TCONS_00020698|organism=Clytia hemisphaerica|type=transcript|length=3115bpRun BLAST on NCBI protein sequence of TCONS_00020698-protein >TCONS_00020698-protein ID=TCONS_00020698-protein|Name=TCONS_00020698-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp MFDQHGSHKMAEQYDLTSKVGTYLDRHLVFPLLEFLSSKEIYDETELLKGRun BLAST on NCBI transcript from alignment at sc0000363:175392..195533- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020698 ID=TCONS_00020698|Name=TCONS_00020698|organism=Clytia hemisphaerica|type=transcript|length=20142bp|location=Sequence derived from alignment at sc0000363:175392..195533- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000363:175392..195533- >TCONS_00020698 ID=TCONS_00020698|Name=TCONS_00020698|organism=Clytia hemisphaerica|type=CDS|length=12312bp|location=Sequence derived from alignment at sc0000363:175392..195533- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020698 vs. Swiss-Prot (Human)
Match: EIF3E (Eukaryotic translation initiation factor 3 subunit E OS=Homo sapiens GN=EIF3E PE=1 SV=1) HSP 1 Score: 637.876 bits (1644), Expect = 0.000e+0 Identity = 301/428 (70.33%), Postives = 359/428 (83.88%), Query Frame = 3
Query: 1395 MAEQYDLTSKVGTYLDRHLVFPLLEFLSSKEIYDETELLKGRLELLQGTNMLDFVKDEYQKLHQTDDVPQELLDKRSEVIQQMKDLEASTEAITTAFDDPDFQREAANARDGVVLFKYLTEHFDLTTEHLDTLYQYAKFQYECGNYQGASQYLYFYRVLVHDDDKNAASAVWGKLACEILTQNWDAALEDINRLKESIDNDHFSHPLHLLQQRTWLIHWSLFVFFNHAKGRDLLIEMFLYQPSYLNAIQTTCPHILRYLTTAVITNK---RRKSILKDLVRVIQQESYTYRDPITEFLECLYVNFDFDGAQRKLVECETVLSNDFFLIACLDDFIENARLFIFETFCRIHQCISINMLAEKLNMTPEEAERWIVNLIRNARLDAKIDSKQGHVVMGTQAAAVHQQVIERTKGLMFKTQNISGNIDKKL 2669
MAE YDLT+++ +LDRHLVFPLLEFLS KEIY+E ELL+G+L+LL TNM+DF D Y+ L+ +DD+P L +KR+ V+ Q+K L+A TE I F+DP+ R+ + RDG +LF YL + E+LDTLY+YAKFQYECGNY GA++YLYF+RVLV D+NA S++WGKLA EIL QNWDAA+ED+ RLKE+IDN+ S PL LQQRTWLIHWSLFVFFNH KGRD +I++FLYQP YLNAIQT CPHILRYLTTAVITNK +R+ +LKDLV+VIQQESYTY+DPITEF+ECLYVNFDFDGAQ+KL ECE+VL NDFFL+ACL+DFIENARLFIFETFCRIHQCISINMLA+KLNMTPEEAERWIVNLIRNARLDAKIDSK GHVVMG A + +QQVIE+TK L F++Q ++ NI+KKL
Sbjct: 1 MAE-YDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLY-SDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQMLAMNIEKKL 426 The following BLAST results are available for this feature:
BLAST of TCONS_00020698 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.