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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020705 ID=TCONS_00020705|Name=TCONS_00020705|organism=Clytia hemisphaerica|type=transcript|length=7835bpRun BLAST on NCBI protein sequence of Putative cnidarian restricted protein >TCONS_00020705-protein ID=TCONS_00020705-protein|Name=Putative cnidarian restricted protein|organism=Clytia hemisphaerica|type=polypeptide|length=2502bp MSEENVAVYRRRKTSRTEGADTRQRVIGGIGRRKVSGANAIQGRIQQFAGRun BLAST on NCBI transcript from alignment at sc0000363:222149..274781- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020705 ID=TCONS_00020705|Name=TCONS_00020705|organism=Clytia hemisphaerica|type=transcript|length=52633bp|location=Sequence derived from alignment at sc0000363:222149..274781- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000363:222149..274781- >TCONS_00020705 ID=TCONS_00020705|Name=TCONS_00020705|organism=Clytia hemisphaerica|type=CDS|length=120144bp|location=Sequence derived from alignment at sc0000363:222149..274781- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020705 vs. Swiss-Prot (Human)
Match: ARHGH (Rho guanine nucleotide exchange factor 17 OS=Homo sapiens GN=ARHGEF17 PE=1 SV=1) HSP 1 Score: 424.091 bits (1089), Expect = 1.077e-119 Identity = 224/549 (40.80%), Postives = 346/549 (63.02%), Query Frame = 2
Query: 4712 VQNDNISIPVINTPEVDVKPVS-------PAPKTKT---PKQEMRRHVLQNLLDTEKSYVNNMESMLTMFYHPLKRPDNNII-EPTLVDEIFYQIPELLDNHKHFYEDITARIDDWSDSQIIGDIFINQFTKHNLMDAYSNFINNFVQAKDAIRQAS-SRPQFTKYIETCSQKHHEKLTLNDLLIMPVQRIPRYMLILKDLLKYTTPEHPDYDSLERAMQEIKTLADRMNKGEVEADQAEKDIEKLRDIEHTIEGISDLVTNTRKFIRQDLVAENKGSITKKDRCLFLFSNLLVCTTVRRKNNVLRRN--SLFNGQSTPE-FNRYKFVWKLALENIEICKVSNPQQNGGSRE-----LEKLEDDIRILNDILNMSDNISVPHQNMENSIREQLNEVRALIQEKQTQSPQTTLSPSLSRIELQAQTEDDVENYTFQFLSAECKSSWEAYFNDAKQKLAYSRDAFPPEFQYPTPITKTRSGMQFTCAAPSYINSFTGASTEENRMPGDVWVCNSDGYVGQVCLLSMIPGVQSKASLSVCSARIVCIAVIPG 6298
V D +P+ P + KP P P +K P+ +MR+HV LLDTE+SYV ++ +++ + PLK+P+N+++ +P+LVDEIF QIPELL++H+ F E + + W Q +G + + F+K L++ YS +I+NF+ AKDA+R A +RP F K++E +++ EK L+DL+I PVQRIPRY L++KDLLK+T +HPD+ L A + IK +A+R+NKG A++AE+ L++IE IEG+ DL R+F+RQ++V E K KKDR LFLF++L+VCTT++RK+ LRR+ SL+ S + ++YK +WKL LE+ +I K ++ N RE + +L++D+ L + +S+++ PHQ++++++R+ + + EKQ + P +++EL A + ++Y F+F + + +E F++AK+KLA S+ PEF PI KTRSGMQF+CAAP+ +NS S E VWVCNSDGYVGQVCLLS+ +A ++VCSARI+CI +PG
Sbjct: 1023 VPVDMPCLPLAAPPSAEAKPPEAARPADEPTPASKCCSKPQVDMRKHVAMTLLDTEQSYVESLRTLMQGYMQPLKQPENSVLCDPSLVDEIFDQIPELLEHHEQFLEQVRHCMQTWHAQQKVGALLVQSFSKDVLVNIYSAYIDNFLNAKDAVRVAKEARPAFLKFLEQSMRENKEKQALSDLMIKPVQRIPRYELLVKDLLKHTPEDHPDHPLLLEAQRNIKQVAERINKGVRSAEEAERHARVLQEIEAHIEGMEDLQAPLRRFLRQEMVIEVKAIGGKKDRSLFLFTDLIVCTTLKRKSGSLRRSSMSLYTAASVIDTASKYKMLWKLPLEDADIIKGASQATN---RENIQKAISRLDEDLTTLGQMSKLSESLGFPHQSLDDALRDLSAAMHRDLSEKQALCYALSFPP--TKLELCATRPEGTDSYIFEFPHPDARLGFEQAFDEAKRKLASSKSCLDPEFLKAIPIMKTRSGMQFSCAAPT-LNSCPEPSPE-------VWVCNSDGYVGQVCLLSLRAEPDVEACIAVCSARILCIGAVPG 1558 HSP 2 Score: 262.307 bits (669), Expect = 6.901e-70 Identity = 148/351 (42.17%), Postives = 212/351 (60.40%), Query Frame = 2
Query: 6686 KACMWLGTEDRHIYIYNAQDTIPQRKSRVRLTMKSPVTSILYHENKVFVALSGGELCIYKRDLNGVWDLTAPETVQVSMTGSNITCMTAVAGRIWCGSQNTILLVNVTSFSLESPIKVHPEHTRTVHKIVSSGLGVWVSIQSSAVVRLYHATTYENLLDLDVSKAVEKMLNGADAIIKQHKLACLRVTSLLICKDLLWIGTSAGVVLTNPLPSITANMSVPVLRNNXXXXXXXXXXXXVRFLTSVEVPKG-----------------SFKTTDHDQRDLSRVSPSPSRDRLKRVDSNKYKELDSNDTNGTMTLVVSGGDGYEDFKY----SQQNETVGRDDSTNHLLLWRV 7675
++ +WLGTED +++Y + D+I R++ ++L + VT ILY N+VFV+L+ GEL +Y+R+ WD ++V + GS IT M +V GR+WCG QN +L+++ + LE V + +R V +V S LGVWV+++ SA V LYH T+E L ++DV+ V +ML G+DAII+QHK ACLR+T+LL+C++LLW+GTSAGVVLT +P+ +S P + PTG GHTGHVRFL +V++P G + +H R P+P+R ++ LV+SGGDGYEDF+ +ETVGRDDSTNHLLLWRV
Sbjct: 1738 QSSVWLGTEDGCVHVYQSSDSIRDRRNSMKLQHAASVTCILYLNNQVFVSLANGELVVYQREAGHFWDPQNFKSVTLGTQGSPITKMVSVGGRLWCGCQNRVLVLSPDTLQLEHMFYVGQDSSRCVACMVDSSLGVWVTLKGSAHVCLYHPDTFEQLAEVDVTPPVHRMLAGSDAIIRQHKAACLRITALLVCEELLWVGTSAGVVLT--MPTSPGTVSCPRAPLS-PTGLGQGHTGHVRFLAAVQLPDGFNLLCPTPPPPPDTGPEKLPSLEHRDSPWHR-GPAPARPKM---------------------LVISGGDGYEDFRLSSGGGSSSETVGRDDSTNHLLLWRV 2063 The following BLAST results are available for this feature:
BLAST of TCONS_00020705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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