TCONS_00020708 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020708
Unique NameTCONS_00020708
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2200

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020708 ID=TCONS_00020708|Name=TCONS_00020708|organism=Clytia hemisphaerica|type=transcript|length=2200bp
TATAATTGTATATTAAATATTAtgtaatttgattttgataCATGTTGTTG
ATTATGTTTCtgtcttttttttcagattccATATCCTAGTAAATTCTAGT
AAAAGGAATATTATTGAATAATAaagttatatatattttacaaaataatt
tgCTACAAGAATGTATTCATGTTAAACAAGATTACAGTGTAATTGAAGCG
GAATTTCTGTCAGGTGGCAAAGTTATACTTGATCAATGGGGCATAGTCAC
AGCACATTTCATCAAACCAGCAATGAAGCTCTGAATCTAAACAGACCTAT
GTCAACAACCTCGGGAAAAAGTAAAGATTTGCCACCAAACCTGGATAGAT
TTAATGATTTGACACAACTACCTCCTGAAGTTGCTGtacaaattctttca
aatttgaATGCCACTGATTTGTGTTTGGCTTCTTGTGTTTGGAAGGATTT
GGCAGAAAATGAATTGCTTTGGAAAAAGCTTTGCTTTTCCAAATGGGGAT
ATACAAGCATTTATGGCAATTTGAAGTATTCTCATATTTCAATCAAGCTT
AagaaaccaaTTTTCAAGAACCTATACTTATCATTAGATGAAGCTACTCT
TATATTTGGATTCCGCCCTCATCAGGGTATAAAATATCTGACAGACCATA
ACATTATTGAAGAAGAAACGGAAGAAGTTGCTAAATTCATACATCACACA
TCTTCACTATCCAATAAATCTCTCACCAAGTATCTCAAAGACAAGAGAGA
AGTGTTGGATCTTTTAGTCATGTATATGAATTTTACTGGTTTTACCATAT
GTGACGGGCTTAggaaatttttcaagaaaattcacCCACCAGAGGAACGA
GGCAATTTCTTAGATGTCTTGATAGAGAAATTTTCACATCGATTCATTGA
ATGCAATCCCACGTCAGATCTCAACCAAGAGCATATATCTGTGTTGTGTT
ATTCATTGATGTTATTAAGTGTCGACTTGTACAGCCCACATGTTCGAAAC
AAAATGTCGAAACGTGAATATATTAAGAACAATCATCAAGTTTTAAATGG
TGAAGTTAGTCGAGAGACACTTGGTGATTTTTACGACGATGTTTATTTAA
ATGGACACATAGTGCCTTCTCATTGTAAACAAGTCAATAAACGGAAAGGT
GGCAAACGACAGCATTGCTTTCCATTTTATAGACCCTATGGTGCCATCTT
TGAGATAAAACCGATAGAACTGAAGCTGTTGAGTTGTAACTGCTGATAGT
TTCGGGTTTTAGATTGTATAGATATTTTTTGATACAGGGATGAAATATGT
GGTCGGAATTACTGATCTAACAACATTTTATGCCTCTAAAATGCTCCCTT
CACATGCTTTTTATAAGggaaattttataagaacgcgAGGCTTAGTTAGT
GTCAAAGTCCTagaataaatgaaaacaaaataaaaaagagaacttttcga
aaagttttaAGAGCATATCAGACCATtcaattttatatccatacagaggG
TGGATgaacattttcagggggtaatCCGAGAGGAATTATCAGGGGGTCTA
ATGGAGTGATTTTTTCCAcagggtaaaaagttattctaaagtTTTCAGGG
GGTaagagactgattttagttAGTCCCGTCATTATAAGGTATGTaagaaa
ttttctaaatttttttttgcaaattttgccattttccaggggtacCCATA
CATTTCCAAgaattcttttttataattgaaaaggttcgtccaccccaaTG
TACGGATTTTTTTAACGGGACAGCCATTTGTTATGAAAAACTTTCCTGTT
CCGATTGCTCAACTTCTTGGTCCGCAACCGATTTTcgttgaatttcaaat
tttcttctttatcttgAGCTTATTATTGcaactttcaatttttatcaaga
gacaaatttgttttagttcgaaaattatatttcatttgttttttctttca
atgaaaTTAAATATGATTGTTAAATAGATTTTAATAGTAGTAAATATTGT
AATTTATAGTTTTTCTTGTTGTCACTTatacataaattatttttttcttt
ttcaacagCTATTGTTTATAAAACCGAAATGCAAATTCACTTGCAAAGTA
AGAAAACATCGTCGTATTTTGTTTAATGTAAAACTGAGCCCACTGGCGCA
TCCAAATTAtcttattataaatattttcaacaataccctaacaggaaaat
Run BLAST on NCBI

transcript from alignment at sc0000363:277573..284988-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020708 ID=TCONS_00020708|Name=TCONS_00020708|organism=Clytia hemisphaerica|type=transcript|length=7416bp|location=Sequence derived from alignment at sc0000363:277573..284988- (Clytia hemisphaerica)
TATAATTGTATATTAAATATTATGTAATTTGATTTTGATACATGTTGTTG
ATTATGTTTCTGTCTTTTTTTTCAGATTCCATATCCTAGTAAATTCTAGT
AAAAGGAATATTATTGAATAATAAAGTTATATATATTTTACAAAATAATT
TGCTACAAGAATGTATTCATGTTAAACAAGATTACAGTGTAATTGAAGCG
GAATTTCTGTCAGGTGGCAAAGTTATACTTGATCAATGGGGCATAGTCAC
AGCACATTTCATCAAACCAGCAATGAAGCTCTGAATCTAAACAGACCTAT
GTCAACAACCTCGGGAAAAAGTAAAGATTTGCCACCAAACCTGGATAGAT
TTAATGATTTGACACAACTACCTCCTGAAGTTGCTGTACAAATTCTTTCA
AATTTGAATGCCACTGATTTGTGTTTGGCTTCTTGTGTTTGGAAGGATTT
GGCAGAAAATGAATTGCTTTGGAAAAAGTAAGTTTTAATATTAGAATCTT
TTTATTTTTTATTTTTTAAATGAAAAGATTGAAAATGGTTTCTTTGAAAA
TTTGTTTAGAAAATGTTTTACGCAACTGATATTTATGGAAAAACTTTGTC
TTGATCATTGTGCATCATTTGAAAGAGAAAAAGGGATTTGAAAATCTTGA
GAGAATTCCAATTGAGACACAAAATATAATTTATTACCCTTTTTTCAGGC
TTTGCTTTTCCAAATGGGGATATACAAGCATTTATGGCAATTTGAAGTAT
TCTCATATTTCAATCAAGCTTAAGGTTTGATTAATTTTTTTGTATATATT
TTAAATTTTCAATCAATACAGGCCAATTTCCAAGGTCTTAAGGTTCCACC
GTTTTTATCAAAAGATTCTAGAATATGTAGGTTCGAAAAATGTAGGGAGG
TCTGGGAGCACTGTTAACCCTGATCTGGTCCAAGGCAGAGTCATAGTGGA
AGTGTAGGGAGTGGTAGAATTAAGTGCTAAATTATTGAATACTTGATTGA
AGAGTTTCTTTACCTCTTTACCTTTTTCCACAGCCAATTTTTTTTCTTGA
AGATTCAACCTGATTCAATATAACAACTCAATTCAAGATTGAGTGACCCG
GTAGCAGAAAATCCCTGGAAGTTTGCCTGCAATTAACGGATCTTGGCTTC
ATTAAAACTAAGCCTTTTGGTTCACACACTCTTTAAATAAAATTTGACAA
TTTATTATTTTCTTTGAATCATATTTTTTTCTTTTTTTTTAGAAACCAAT
TTTCAAGAACCTATACTTATCATTAGATGAAGCTACTCTTATATTTGGAT
TCCGCCCTTATCAGGTACTAAATTACATCCTGAAATTTTAATGAATTTTT
AGTTTTTCTTCTTACAAATGATGAAGCAAGTTTTTCTGTCTTTATCCCAT
AGACTAAATACCGTCCTTATTAGATTTGCATCCTAGTAACAGATAACAAG
CCTTGAGAGAAGAAGTTTCATAAAATTGGACTCTCTTTTTTGACATTTCG
TCCAGTCGTACCAAAGCAAATTTCCGTACTGGATATAACAGAGTGCTTCT
TTAAATTGAAGCTTCATATTATTCTGTTTTCCAGGGTATAAAATATCTGA
CAGACCATAACATTATTGAAGAAGAAACGGAAGAAGTTGCTAAATTCATA
CATCACACATCTTCACTATCCAATAAATCTCTCACCAAGTATCTCAAAGA
CAAGTGTGTTTCCTTATTCTTTCAGAGATTCATAATGAACACCGAAGGAA
AATTATTCAGAACACTGTATTTTGCTTGAATTATCTTTTCTACTTGCTTT
ACTCTGGACATTCCTCTTGGTATTTTTGAAAAAGATTGTATTTTGTGGGC
TTTGTTTCACAGAAAAATGAATTCNTTGAAAATGGTTTCTTTGAAAATAG
ACGATATCGGCTTTGCCAAATTCTCCCCGAATGATTACCTATGATGCATT
GCGCAAAAAAATTCACGGACGATAACCCTAACCCTAACAATGCATCATGG
GTAATCATTCGGGGAGAATTCGGAAAGCCGATATCGTCTATTTGTTTAGA
AAATGTTTTACGCAACTGATATTTATGGAAAAACTTTGTCTTGATCATTG
TGCAATTTGAAAGAGAAAAAGGTAAAAATGGATTTGAAAATCTTGAAAGA
ATTCCAATTGAGACAATTTATTACCATTTTTTCAGGCTTTGCTTTTCCAA
ATGGGGATATACAAGCATTTATGGCAATTTGAAGTATTCTCATATTTCAA
TCAAGCTTAAGGTTTGATTAATTTTTTTGTATATATTTTAAATTTTCAAT
CAATACAGGCCAATTTCCAAGGTCTTAAGGTTCCACCGTTTTTATCAAAA
GATTCTAGAATATGTAGGTTCGAAAAATGTAGGGAGGTCTGGGAGCACTG
TTAACCCTGATCTGGTCCAAGGCAGAGTCATAGTGGAAGTGTAGGGAGTG
GTAGAATTAAGTGCTAAATTATTGAATACTTGATTGAAGAGTTTCTTTAC
CTCTTTACCTTTTTCCACAGCCAATTTTTTTTCTTGAAGATTCAACCTGA
TTCAATATAACAACTCAATTCAAGATTGAGTGACCCGGTAGCAGAAAATC
CCTGGAAGTTTGCCTGCAATTAACGGATCTTGGCTTCATTAAAACTAAGC
CTTTTGGTTCACACACTCTTTAAATAAAATTTGACAATTTATTATTTTCT
TTGAATCATATTTTTTTCTTTTTTTTTAGAAACCAATTTTCAAGAACCTA
TACTTATCATTAGATGAAGCTACTCTTATATTTGGATTCCGCCCTTATCA
GGTACTAAATTACATCCTGAAATTTTAATGAATTTTTAGTTTTTCTTCTT
ACAAATGATGAAGCAAGTTTTTCTGTCTTTATCCCATAGACTAAATACCG
TCCTTATTAGATTTGCATCCTAGTAACAGATAACAAGCCTTGAGAGAAGA
AGTTTCATAAAATTGGACTCTCTTTTTTGACATTTCGTCCAGTCGTACCA
AAGCAAATTTCCGTACTGGATATAACAGAGTGCTTCTTTAAATTGAAGCT
TCATATTATTCTGTTTTCCAGGGTATAAAATATCTGACAGACCATAACAT
TATTGAAGAAGAAACGGAAGAAGTTGCTAAATTCATACATCACACATCTT
CACTATCCAATAAATCTCTCACCAAGTATCTCAAAGACAAGTGTGTTTCC
TTATTCTTTCAGAGATTCATAATGAACACCGAAGGAAAATTATTCAGAAC
ACTGTATTTTGCTTGAATTATCTTTTCTACTTGCTTTACTCTGGACATTC
CTCTTGGTATTTTTGAAAAAGATTGTATTTTGTGGGCTTTGTTTCACAGA
AAAATGAATTCNTTCCAAGGTCTTAAGGTTCCACCGTTTTTATCAAAAGA
TTCTAGAATATGTAGGTTCGAAAAATGTAGGGAGGTCTGGGAGCACTGTT
AACCCTGATCTGGTCCAAGGCAGAGTCATAGTGGAAGTGTAGGGAGTGGT
AGAATTAAGTGCTAAATTATTGAATACTTGATTGAAGAGTTTCTTTACCT
CTTTACCTTTTTCCACAGCCAATTTTTTTTCTTGAAGATTCAACCTGATT
CAATATAACAACTCAATTCAAGATTGAGTGACCCGGTAGCAGAAAATCCC
TAGAAGTTTGCCTGCAATTAACGGATCTTGGCTTCATTAAAACTAAGCCT
TTTGGTTCACACACTCTTTAAATAAAATTTGACAATTTATTGTTTTCTTT
GAATCATATTTTTTTCTTTTTTTTTAGAAACCAATTTTCAAGAACCTATA
CTTATCATTAGATGAAGCTACTCTTATATTTGGATTCCGCCCTCATCAGG
TACTAAATTACATCCTGAAATTTTAATGAATTTTTAGTTTTTCTTCTTAC
AATAATGATGAAGCAAGTTTTTCTGTCTTTATCCCATAGACTAAATACCG
TCCTTATTAGATTTGCATCCTAGTAACAGATAACAAGCCTTGAGAGAAGA
AGTTTCATAAAATTGGACTCTCTTTTTTGACATTTCGTCCAGTCGTACCA
AAGCAAATTTCCGTACTGGATATAACAGAGTGCTTCTTTAAATTGAAGCT
TCATATTATTCTGTTTTCCAGGGTATAAAATATCTGACAGACCATAACAT
TATTGAAGAAGAAACGGAAGAAGTTGCTAAATTCATACATCACACATCTT
CACTATCCAATAAATCTCTCACCAAGTATCTCAAAGACAAGTGTGTTTCC
TTATTCTTTCAGAGATTCATAATGAACACCGAAGGAAAATTATTCAGAAC
ACTGTATTTTGCTTGAATTATCTTTTCTACTTGCTTTACTCTGGACATTC
CTCTTGGTATTTTTGAAAAAGATTGTATTTTGTGGGCTTTGTTTCACAGA
AAAATGAATTCACTTTCAGTTTTCTCATACCACTTCTTATTTCAAAAAAA
TTACTGATTGTCCTTAGAAAAAATCAAGACCAGTACCTATATTCAAGGAC
TTGAAGTGATTTCTCATAGCTCTTCTTCTTCCCTTTCAGGAGAGAAGTGT
TGGATCTTTTAGTCATGTATATGAATTTTACTGGTTTTACCATATGTGAC
GGGCTTAGGTAAAGTTTGTTTTTGGACCTACCCCGGTGGAGGTCCTATAA
ATTAACCTGTGTTTGTTCGTCCGTCCGTTCGTCCGTTCGTCCGTTCGTTC
GTCTGTTACCAACTTTTCTCAGGATTGAATCATAGGAATCTTTTGATTTT
TGGTACAAAGGTGCAAAATGGTGATGGCCAAAATGTGACGGAGCCCGATT
TTCGAAAAAAAAAAATTTTGGGGCCAATTTGGGCAAAAAAACGGATGTGA
ATCCGAATGTGAAAAATTGGATCATTAATTTTTTCAGATTTTTTGTACGA
AAGTAGGGTACCATCATAGGTAAAAGATGGTTCAAGCAGATTTTTGCAAA
AAAATTTTGTTGGCTCAAAAAACGCATGTTTATCTANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGA
AATTTTGGTTTCTAAACGTTTTTTTTATAAGAAACAAACGACTAATTTTG
AGAGATCGTCACTATTTGTGTTCTGAATGATTGTTTAACGGTCATGTAGG
TAGATATCAATTATATTTGTTAAATGCATAACCAGGTAGGTCCATAAAAG
TATCACTTGTTTGTCTTGTATCCAAGATCAAGCACTTTGAAAATATTTTG
ACACTATCCACATCTCAAATATATAAACTCCAGAGCTACCTTTGAAATTT
CTATGGAAGGTAGAGTCCTAGAGTAATAATTTTCAATCTTTTTTTTTCTG
ACAGGAAATTTTTCAAGAAAATTCACCCACCAGAGGAACGAGGCAATTTC
TTAGATGTCTTGATAGAGAAATTTTCACATCGATTCATTGAATGCAATCC
CACGTCAGATCTCAACCAAGGTAAAAAAGGAGAAAGTTTTGATTAAAATT
TATTTCTTACAGGGGAAATTTTATTTAAAATTCTTTTGCTTCTATCCCTA
TCTTAAAACATAATGCAATAAACTTGAAATGTCAGTCAGTTTTTAAACTC
TTAAATCTTCTAATCTTGCAACTCTACATGTGCAAAACATTCTGACACCT
TTCTTTAGAGATAGGATAGATAATAGGTCAGAATCGCTGATTGACAAAAG
ATTTTTTCCTCTCTGAACACTAAGCAAAGAAATATAGTTTCAATCAGCGA
TTCCAACTTTCTTATTATTCCAAACTCTGAAAAGGTTGTCGAAATTAGAT
GATTTAGTCGACATCAGACCAGCTTACGGTAGATATTCATTGCATATTCA
ACCTTTGACCTGAATGTTTATTTAATAACATGATTATATTTTGTGTGTTA
ATCATACTAAGCAATATTATCTTGTCATAATCTCTTTTATTTTAGAGCAT
ATATCTGTGTTGTGTTATTCATTGATGTTATTAAGTGTCGACTTGTACAG
CCCACATGTTCGAAACAAAATGTCGAAACGTGAATATATTAAGAACAATC
ATCAAGTTTTAAATGGTGAAGTTAGTCGAGAGACACTTGGTGATTTTTAC
GACGATGTTTATTTAAATGGACACATAGTGCCTTCTCATTGTAAACAAGT
CAATAAACGGAAAGGTGGCAAACGACAGCATTGCTTTCCATTTTATAGAC
CCTATGGTGCCATCTTTGAGATAAAACCGATAGAACTGAAGCTGTTGAGT
TGTAACTGCTGATAGTTTCGGGTTTTAGATTGTATAGATATTTTTTGATA
CAGGGATGAAATATGTGGTCGGAATTACTGATCTAACAACATTTTATGCC
TCTAAAATGCTCCCTTCACATGCTTTTTATAAGGGAAATTTTATAAGAAC
GCGAGGCTTAGTTAGTGTCAAAGTCCTAGAATAAATGAAAACAAAATAAA
AAAGAGAACTTTTCGAAAAGTTTTAAGAGCATATCAGACCATTCAATTTT
ATATCCATACAGAGGGTGGATGAACATTTTCAGGGGGTAATCCGAGAGGA
ATTATCAGGGGGTCTAATGGAGTGATTTTTTCCACAGGGTAAAAAGTTAT
TCTAAAGTTTTCAGGGGGTAAGAGACTGATTTTAGTTAGTCCCGTCATTA
TAAGGTATGTAAGAAATTTTCTAAATTTTTTTTTGCAAATTTTGCCATTT
TCCAGGGGTACCCATACATTTCCAAGAATTCTTTTTTATAATTGAAAAGG
TTCGTCCACCCCAATGTACGGATTTTTTTAACGGGACAGCCATTTGTTAT
GAAAAACTTTCCTGTTCCGATTGCTCAACTTCTTGGTCCGCAACCGATTT
TCGTTGAATTTCAAATTTTCTTCTTTATCTTGAGCTTATTATTGCAACTT
TCAATTTTTATCAAGAGACAAATTTGTTTTAGTTCGAAAATTATATTTCA
TTTGTTTTTTCTTTCAATGAAATTAAATATGATTGTTAAATAGATTTTAA
TAGTAGTAAATATTGTAATTTATAGTTTTTCTTGTTGTCACTTATACATA
AATTATTTTTTTCTTTTTCAACAGCTATTGTTTATAAAACCGAAATGCAA
ATTCACTTGCAAAGTAAGAAAACATCGTCGTATTTTGTTTAATGTAAAAC
TGAGCCCACTGGCGCATCCAAATTATCTTATTATAAATATTTTCAACAAT
ACCCTAACAGGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011613XLOC_011613Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020708-exon-sc0000363-1575043694:284512..284988TCONS_00020708-exon-sc0000363-1575043694:284512..284988Clytia hemisphaericaexon
TCONS_00020708-exon-sc0000363-1575043694:284215..284290TCONS_00020708-exon-sc0000363-1575043694:284215..284290Clytia hemisphaericaexon
TCONS_00020708-exon-sc0000363-1575043694:281140..281211TCONS_00020708-exon-sc0000363-1575043694:281140..281211Clytia hemisphaericaexon
TCONS_00020708-exon-sc0000363-1575043694:280749..280867TCONS_00020708-exon-sc0000363-1575043694:280749..280867Clytia hemisphaericaexon
TCONS_00020708-exon-sc0000363-1575043694:280381..280449TCONS_00020708-exon-sc0000363-1575043694:280381..280449Clytia hemisphaericaexon
TCONS_00020708-exon-sc0000363-1575043694:279319..279434TCONS_00020708-exon-sc0000363-1575043694:279319..279434Clytia hemisphaericaexon
TCONS_00020708-exon-sc0000363-1575043694:277573..278843TCONS_00020708-exon-sc0000363-1575043694:277573..278843Clytia hemisphaericaexon
TCONS_00020708-exon-sc0000363-1510915933:284512..284988TCONS_00020708-exon-sc0000363-1510915933:284512..284988Clytia hemisphaericaexon
TCONS_00020708-exon-sc0000363-1510915933:284215..284290TCONS_00020708-exon-sc0000363-1510915933:284215..284290Clytia hemisphaericaexon
TCONS_00020708-exon-sc0000363-1510915933:281140..281211TCONS_00020708-exon-sc0000363-1510915933:281140..281211Clytia hemisphaericaexon
TCONS_00020708-exon-sc0000363-1510915933:280749..280867TCONS_00020708-exon-sc0000363-1510915933:280749..280867Clytia hemisphaericaexon
TCONS_00020708-exon-sc0000363-1510915933:280381..280449TCONS_00020708-exon-sc0000363-1510915933:280381..280449Clytia hemisphaericaexon
TCONS_00020708-exon-sc0000363-1510915933:279319..279434TCONS_00020708-exon-sc0000363-1510915933:279319..279434Clytia hemisphaericaexon
TCONS_00020708-exon-sc0000363-1510915933:277573..278843TCONS_00020708-exon-sc0000363-1510915933:277573..278843Clytia hemisphaericaexon
TCONS_00020708-exon-sc0000363-1491911889:284512..284988TCONS_00020708-exon-sc0000363-1491911889:284512..284988Clytia hemisphaericaexon
TCONS_00020708-exon-sc0000363-1491911889:284215..284290TCONS_00020708-exon-sc0000363-1491911889:284215..284290Clytia hemisphaericaexon
TCONS_00020708-exon-sc0000363-1491911889:281140..281211TCONS_00020708-exon-sc0000363-1491911889:281140..281211Clytia hemisphaericaexon
TCONS_00020708-exon-sc0000363-1491911889:280749..280867TCONS_00020708-exon-sc0000363-1491911889:280749..280867Clytia hemisphaericaexon
TCONS_00020708-exon-sc0000363-1491911889:280381..280449TCONS_00020708-exon-sc0000363-1491911889:280381..280449Clytia hemisphaericaexon
TCONS_00020708-exon-sc0000363-1491911889:279319..279434TCONS_00020708-exon-sc0000363-1491911889:279319..279434Clytia hemisphaericaexon
TCONS_00020708-exon-sc0000363-1491911889:277573..278843TCONS_00020708-exon-sc0000363-1491911889:277573..278843Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000363supercontigsc0000363:277573..284988 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.72243	7.99426	2.25057	0.952145	7.76835	5.33797	6.74804	7.31354	5.56823	5.39436	5.4059	3.86405	3.73721	3.81382	3.94123	4.00694	5.02742	4.93546	4.94549	6.7349	7.15748	6.93167	10.3358	11.5808	11.7733	13.0638	6.77699	5.40872	8.92017	8.51455
Blast
[Close]
BLAST of TCONS_00020708 vs. Swiss-Prot (Human)
Match: FBX8 (F-box only protein 8 OS=Homo sapiens GN=FBXO8 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 4.978e-73
Identity = 126/263 (47.91%), Postives = 170/263 (64.64%), Query Frame = 2 
Query:  350 FNDLTQLPPEVAVQILSNLNATDLCLASCVWKDLAENELLWKKLCFSKWGYTSIYGN---LKYSHISIKLKKPIFKNLYLSLDEATLIFGFRPHQGIKYLTDHNIIEEETEEVAKFIHHTSSLSNKSLTKYLKDKREVLDLLVMYMNFTGFTICDGLRKFFKKIHPPEERGNFLDVLIEKFSHRFIECNP----TSDLNQEHISVLCYSLMLLSVDLYSPHVRNKMSKREYIKNNHQVLNGEVSRETLGDFYDDVYLNGHIVP 1117
            F +L  LPPE++  ILS LNATDLCLASCVW+DLA +ELLW+ LC S WG+ SIY     L +S          F+ LY+ LDE +L F   P +G+ Y     I+++  +E+AKFI  T +L+ K L  YL ++R+VLD LV   NF    + + LR+FF+ IH PEERG +L+ LI KFSHRF  CNP       L+ + + VLCYSL+LLS+DL SPHV+NKMSKRE+I+N  +     +S + +G  YD++YL GH+  
Sbjct:   68 FINLEMLPPELSFTILSYLNATDLCLASCVWQDLANDELLWQGLCKSTWGHCSIYNKNPPLGFS----------FRKLYMQLDEGSLTFNANPDEGVNYFMSKGILDDSPKEIAKFIFCTRTLNWKKLRIYLDERRDVLDDLVTLHNFRNQFLPNALREFFRHIHAPEERGEYLETLITKFSHRFCACNPDLMRELGLSPDAVYVLCYSLILLSIDLTSPHVKNKMSKREFIRNTRRAAQN-ISEDFVGHLYDNIYLIGHVAA 319
The following BLAST results are available for this feature:
BLAST of TCONS_00020708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBX84.978e-7347.91F-box only protein 8 OS=Homo sapiens GN=FBXO8 PE=2... [more]
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