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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020711 ID=TCONS_00020711|Name=TCONS_00020711|organism=Clytia hemisphaerica|type=transcript|length=571bp
TGATTATGTTTCtgtcttttttttcagattccATATCCTAGTAAATTCTA
GTAAAAGGAATATTATTGAATAATAaagttatatatattttacaaaataa
tttgCTACAAGAATGTATTCATGTTAAACAAGATTACAGTGTAATTGAAG
CGGAATTTCTGTCAGGTGGCAAAGTTATACTTGATCAATGGGGCATAGTC
ACAGCACATTTCATCAAACCAGCAATGAAGCTCTGAATCTAAACAGACCT
ATGTCAACAACCTCGGGAAAAAGTAAAGATTTGCCACCAAACCTGGATAG
ATTTAATGATTTGACACAACTACCTCCTGAAGTTGCTGtacaaattcttt
caaatttgaATGCCACTGATTTGTGTTTGGCTTCTTGTGTTTGGAAGGAT
TTGGCAGAAAATGAATTGCTTTGGAAAAAGCTTTGCTTTTCCAAATGGGG
ATATACAAGCATTTATGGCAATTTGAAGTATTCTCATATTTCAATCAAGC
TTAagaaaccaaTTTTCAAGAACCTATACTTATCATTAGATGAAGCTACT
CTTATATTTGGATTCCGCCCT Run BLAST on NCBI transcript from alignment at sc0000363:282194..284940- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020711 ID=TCONS_00020711|Name=TCONS_00020711|organism=Clytia hemisphaerica|type=transcript|length=2747bp|location=Sequence derived from alignment at sc0000363:282194..284940- (Clytia hemisphaerica)
TGATTATGTTTCTGTCTTTTTTTTCAGATTCCATATCCTAGTAAATTCTA
GTAAAAGGAATATTATTGAATAATAAAGTTATATATATTTTACAAAATAA
TTTGCTACAAGAATGTATTCATGTTAAACAAGATTACAGTGTAATTGAAG
CGGAATTTCTGTCAGGTGGCAAAGTTATACTTGATCAATGGGGCATAGTC
ACAGCACATTTCATCAAACCAGCAATGAAGCTCTGAATCTAAACAGACCT
ATGTCAACAACCTCGGGAAAAAGTAAAGATTTGCCACCAAACCTGGATAG
ATTTAATGATTTGACACAACTACCTCCTGAAGTTGCTGTACAAATTCTTT
CAAATTTGAATGCCACTGATTTGTGTTTGGCTTCTTGTGTTTGGAAGGAT
TTGGCAGAAAATGAATTGCTTTGGAAAAAGTAAGTTTTAATATTAGAATC
TTTTTATTTTTTATTTTTTAAATGAAAAGATTGAAAATGGTTTCTTTGAA
AATTTGTTTAGAAAATGTTTTACGCAACTGATATTTATGGAAAAACTTTG
TCTTGATCATTGTGCATCATTTGAAAGAGAAAAAGGGATTTGAAAATCTT
GAGAGAATTCCAATTGAGACACAAAATATAATTTATTACCCTTTTTTCAG
GCTTTGCTTTTCCAAATGGGGATATACAAGCATTTATGGCAATTTGAAGT
ATTCTCATATTTCAATCAAGCTTAAGGTTTGATTAATTTTTTTGTATATA
TTTTAAATTTTCAATCAATACAGGCCAATTTCCAAGGTCTTAAGGTTCCA
CCGTTTTTATCAAAAGATTCTAGAATATGTAGGTTCGAAAAATGTAGGGA
GGTCTGGGAGCACTGTTAACCCTGATCTGGTCCAAGGCAGAGTCATAGTG
GAAGTGTAGGGAGTGGTAGAATTAAGTGCTAAATTATTGAATACTTGATT
GAAGAGTTTCTTTACCTCTTTACCTTTTTCCACAGCCAATTTTTTTTCTT
GAAGATTCAACCTGATTCAATATAACAACTCAATTCAAGATTGAGTGACC
CGGTAGCAGAAAATCCCTGGAAGTTTGCCTGCAATTAACGGATCTTGGCT
TCATTAAAACTAAGCCTTTTGGTTCACACACTCTTTAAATAAAATTTGAC
AATTTATTATTTTCTTTGAATCATATTTTTTTCTTTTTTTTTAGAAACCA
ATTTTCAAGAACCTATACTTATCATTAGATGAAGCTACTCTTATATTTGG
ATTCCGCCCTTATCAGGTACTAAATTACATCCTGAAATTTTAATGAATTT
TTAGTTTTTCTTCTTACAAATGATGAAGCAAGTTTTTCTGTCTTTATCCC
ATAGACTAAATACCGTCCTTATTAGATTTGCATCCTAGTAACAGATAACA
AGCCTTGAGAGAAGAAGTTTCATAAAATTGGACTCTCTTTTTTGACATTT
CGTCCAGTCGTACCAAAGCAAATTTCCGTACTGGATATAACAGAGTGCTT
CTTTAAATTGAAGCTTCATATTATTCTGTTTTCCAGGGTATAAAATATCT
GACAGACCATAACATTATTGAAGAAGAAACGGAAGAAGTTGCTAAATTCA
TACATCACACATCTTCACTATCCAATAAATCTCTCACCAAGTATCTCAAA
GACAAGTGTGTTTCCTTATTCTTTCAGAGATTCATAATGAACACCGAAGG
AAAATTATTCAGAACACTGTATTTTGCTTGAATTATCTTTTCTACTTGCT
TTACTCTGGACATTCCTCTTGGTATTTTTGAAAAAGATTGTATTTTGTGG
GCTTTGTTTCACAGAAAAATGAATTCNTTGAAAATGGTTTCTTTGAAAAT
AGACGATATCGGCTTTGCCAAATTCTCCCCGAATGATTACCTATGATGCA
TTGCGCAAAAAAATTCACGGACGATAACCCTAACCCTAACAATGCATCAT
GGGTAATCATTCGGGGAGAATTCGGAAAGCCGATATCGTCTATTTGTTTA
GAAAATGTTTTACGCAACTGATATTTATGGAAAAACTTTGTCTTGATCAT
TGTGCAATTTGAAAGAGAAAAAGGTAAAAATGGATTTGAAAATCTTGAAA
GAATTCCAATTGAGACAATTTATTACCATTTTTTCAGGCTTTGCTTTTCC
AAATGGGGATATACAAGCATTTATGGCAATTTGAAGTATTCTCATATTTC
AATCAAGCTTAAGGTTTGATTAATTTTTTTGTATATATTTTAAATTTTCA
ATCAATACAGGCCAATTTCCAAGGTCTTAAGGTTCCACCGTTTTTATCAA
AAGATTCTAGAATATGTAGGTTCGAAAAATGTAGGGAGGTCTGGGAGCAC
TGTTAACCCTGATCTGGTCCAAGGCAGAGTCATAGTGGAAGTGTAGGGAG
TGGTAGAATTAAGTGCTAAATTATTGAATACTTGATTGAAGAGTTTCTTT
ACCTCTTTACCTTTTTCCACAGCCAATTTTTTTTCTTGAAGATTCAACCT
GATTCAATATAACAACTCAATTCAAGATTGAGTGACCCGGTAGCAGAAAA
TCCCTGGAAGTTTGCCTGCAATTAACGGATCTTGGCTTCATTAAAACTAA
GCCTTTTGGTTCACACACTCTTTAAATAAAATTTGACAATTTATTATTTT
CTTTGAATCATATTTTTTTCTTTTTTTTTAGAAACCAATTTTCAAGAACC
TATACTTATCATTAGATGAAGCTACTCTTATATTTGGATTCCGCCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020711-exon-sc0000363-1575043694:284512..284940 | TCONS_00020711-exon-sc0000363-1575043694:284512..284940 | Clytia hemisphaerica | exon |
| TCONS_00020711-exon-sc0000363-1575043694:282728..282803 | TCONS_00020711-exon-sc0000363-1575043694:282728..282803 | Clytia hemisphaerica | exon |
| TCONS_00020711-exon-sc0000363-1575043694:282194..282259 | TCONS_00020711-exon-sc0000363-1575043694:282194..282259 | Clytia hemisphaerica | exon |
| TCONS_00020711-exon-sc0000363-1510915933:284512..284940 | TCONS_00020711-exon-sc0000363-1510915933:284512..284940 | Clytia hemisphaerica | exon |
| TCONS_00020711-exon-sc0000363-1510915933:282728..282803 | TCONS_00020711-exon-sc0000363-1510915933:282728..282803 | Clytia hemisphaerica | exon |
| TCONS_00020711-exon-sc0000363-1510915933:282194..282259 | TCONS_00020711-exon-sc0000363-1510915933:282194..282259 | Clytia hemisphaerica | exon |
| TCONS_00020711-exon-sc0000363-1491911889:284512..284940 | TCONS_00020711-exon-sc0000363-1491911889:284512..284940 | Clytia hemisphaerica | exon |
| TCONS_00020711-exon-sc0000363-1491911889:282728..282803 | TCONS_00020711-exon-sc0000363-1491911889:282728..282803 | Clytia hemisphaerica | exon |
| TCONS_00020711-exon-sc0000363-1491911889:282194..282259 | TCONS_00020711-exon-sc0000363-1491911889:282194..282259 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000363 | supercontig | sc0000363:282194..284940 - |
Blast
BLAST of TCONS_00020711 vs. Swiss-Prot (Human)
Match: FBX8 (F-box only protein 8 OS=Homo sapiens GN=FBXO8 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.626e-22 Identity = 48/93 (51.61%), Postives = 59/93 (63.44%), Query Frame = 2
Query: 302 FNDLTQLPPEVAVQILSNLNATDLCLASCVWKDLAENELLWKKLCFSKWGYTSIYGN---LKYSHISIKLKKPIFKNLYLSLDEATLIFGFRP 571
F +L LPPE++ ILS LNATDLCLASCVW+DLA +ELLW+ LC S WG+ SIY L +S F+ LY+ LDE +L F P
Sbjct: 68 FINLEMLPPELSFTILSYLNATDLCLASCVWQDLANDELLWQGLCKSTWGHCSIYNKNPPLGFS----------FRKLYMQLDEGSLTFNANP 150
The following BLAST results are available for this feature:
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