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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020730 ID=TCONS_00020730|Name=TCONS_00020730|organism=Clytia hemisphaerica|type=transcript|length=1107bp
CAGACTTAAAAACACTGTCGGCTGAAACTTTACAACATCAGTGCTCGACT
TTCGAAGAAATTCATATAATTTTCGCACAATTAGTGATGAATAATTATTT
GAGATGAATCCTAATGACttcaattatcattagaagtgaTTTCAAGAAAT
TTACTGTGTTGATCACAAAGATATTTTCGGATGTTGGTGTGGANATAATT
TTCGCACAATTAGTGATGAATAATTATTTGAGATGAGTCCTAATGACttc
aattatcattagaagtaatttcaagaaatttactGTGTTGATCACAAAGA
TATCTTCGGATGTTGGTGTGGAATTTGTGTTACACTTTCACTCAAACTAA
ATAGATCTCAAGTAATTGATTTCAAGATTGGAGAAGAAGCAATAAAGTCA
AAGACACCAAGACACCCACCTGCTGGACACACATGGTGCAGCAGGACCGA
GGACCGAGGACCAAGTAGACATCTCACCACAAACAAAGTTAACCGAATCG
TCTAGAAAAACTTCACGCATCAAATGAAATTCCATACATGCAACATGACA
TAGcattgtaatGACCAACAGAAGGATGGAACATAAGTGCCAAGAGAATc
tggtcaatgaaatgaaaCGTTTGGCCGAACATACAATCAGATTTATATGA
TCAACAAAACTAGTTATGTCAACGGTATCAGACAAAAAGTATACCAGTTA
GAGGAAAGGAACTTTTTTCATGGAATATCTTAAAGTCTGTAAAGAAGTCA
CAACGACTACCGCTTTTGATCAGGATAGAGATGAGTTTGGATTTTATTTG
CCGTACAAGTATTACCAGATTCCAACCGAGAATCAAGCGATTTatattgt
tttaaatgtttgagCAGAATTTTAAATCTTTAGACTCTCTTAAATGACTT
CTAATTTTTATCTTGAAAGTCTGTAAAGAATTATACAgagtatttttttg
taaagagTTATAATTAAGTTTTGTCCacttttatttttggaaatattttt
gtcataaaCATCtgattttttatcatatttattgtttcaatttttttcca
atgttatttttctaaatttttgtttttattttttcccaagCATTAGTTGA
AATTTTG Run BLAST on NCBI transcript from alignment at sc0000365:308969..311375+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020730 ID=TCONS_00020730|Name=TCONS_00020730|organism=Clytia hemisphaerica|type=transcript|length=2407bp|location=Sequence derived from alignment at sc0000365:308969..311375+ (Clytia hemisphaerica)
CAGACTTAAAAACACTGTCGGCTGAAACTTTACAACATCAGTGCTCGACT
TTCGAAGAAATTCATATAATTTTCGCACAATTAGTGATGAATAATTATTT
GAGATGAATCCTAATGACttcaattatcattagaagtgaTTTCAAGAAAT
TTACTGTGTTGATCACAAAGATATTTTCGGATGTTGGTGTGGANATAATT
TTCGCACAATTAGTGATGAATAATTATTTGAGATGAGTCCTAATGACttc
aattatcattagaagtaatttcaagaaatttactGTGTTGATCACAAAGA
TATCTTCGGATGTTGGTGTGGAATTTGTGTTACACTTTCACTCAAACTAA
ATAGGTGAGTTGAAGGGCTACAGACGTATACTCGTTagcttttatatatt
tttagacGAAATCCACTTGAACAGTTGATGGCAATCTTAAAGTTGAGATA
TTTTTTAGgcttattttgtaaaaatctttgtACTTTCAGATTTATAATAC
TCTGTCTGCAAAATTGACATAGTGTCTCCTGACATAATAATATGAGGTGG
attgtacatttttattttgtgaagcAGGCTGTGATCGGCGATAGAtacaa
ttctcatttttatcttcCGACTTGGTTTCAGTGTGACTGTAAAATTATAA
TATTGCCATTggatgtattttttatttaagagaTTGGGTGCCTTTTCAAT
CTTAAATCTACCTTCTTTTTAGAAGATCTCAAGTAATTGATTTCAAGATT
GGAGAAGAAGCAATAAAGTCAAAGACACCAAGACACCCACCTGCTGGACA
CACATGGTACGTTGAATTTTCCAATAAATGAATTTTTACTATCCAATGAC
ACCATGTATTTACCGGTGATTCACCGTTTGACAAGTAACTTGCCAAAAAT
GATCGCATGTGAAAAGTATTCTTACATttggttttcttgaaatatcatga
ttttgcatgatatttACTACCCAATGACACTATTTATTTACTGGCAATTC
ACCGTTTGACAAGTAACTTGCCAAAAATGATCGCATGTGAAAAGTATTCT
TACATTTGGTTTTCTTGAAATTATGATTTTGCAAGAGTTTTTACTACCCA
ATGACACTATTTATTTACCGGCGATTCACCGTTTGACAAGTAACTTGCAA
AAAATGATCGCATGTGAAACATATTCTTACATTTGGTTTTCTTGAAATTA
TGATTTTGCAAGAGTTTTTAAATGACACTTACCAGCAATTCACCGGTTGA
CAAGTAACTTGCCAAAAATGATCGCACGTCCTGGCACGTCAAACATATTC
TTACatttggttttgaaattttgctgctttagTCAGGCATTTGAGAGTTT
CCCTCCACTGTAAGTTACCAGTTCTGATGGTACATAATCAGAAAATTATA
ACAAACTTCGCACATTTTCAGGTGCAGCAGGACCGAGGACCGAGGACCAA
GTAGACATCTCACCACAAACAAAGTTAACCGAATCGTCTAGAAAAACTTC
ACGCATCAAATGAAATTCCATACATGCAACATGACATAGGTATGTATGTT
ATATTTGTTTTATTCTTATGTTTTCATTTAAACATTGTTGCATTGATCCT
GGTGAACCTGTCAGACTATGTTATCTTTCAAACATTCTGTTTTCGGGCAG
ACAGGTTGTCAAGAATCTGTTGTGTCCTTCTTTTCCTTCCAGAGGATACT
TCCCTACTTCTCCAATGGCCTTTTCATATGAATAATTTATGCTTGGCCTA
CTTCTCCAGCAGTTCCAAGTTTTTCCATTATGTCACTCTTAAAGATTTAA
AAGGAACTAGTTCCAAGATTGTAAGTCAAATtgattttctgtattttttt
tagcattgtaatGACCAACAGAAGGATGGAACATAAGTGCCAAGAGAATc
tggtcaatgaaatgaaaCGTTTGGCCGAACATACAATCAGATTTATATGA
TCAACAAAACTAGTTATGTCAACGGTATCAGACAAAAAGTATACCAGTTA
GAGGAAAGGAACTTTTTTCATGGAATATCTTAAAGTCTGTAAAGAAGTCA
CAACGACTACCGCTTTTGATCAGGATAGAGATGAGTTTGGATTTTATTTG
CCGTACAAGTATTACCAGATTCCAACCGAGAATCAAGCGATTTatattgt
tttaaatgtttgagCAGAATTTTAAATCTTTAGACTCTCTTAAATGACTT
CTAATTTTTATCTTGAAAGTCTGTAAAGAATTATACAgagtatttttttg
taaagagTTATAATTAAGTTTTGTCCacttttatttttggaaatattttt
gtcataaaCATCtgattttttatcatatttattgtttcaatttttttcca
atgttatttttctaaatttttgtttttattttttcccaagCATTAGTTGA
AATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020730-exon-sc0000365-1491911889:308969..309322 | TCONS_00020730-exon-sc0000365-1491911889:308969..309322 | Clytia hemisphaerica | exon |
| TCONS_00020730-exon-sc0000365-1510915933:308969..309322 | TCONS_00020730-exon-sc0000365-1510915933:308969..309322 | Clytia hemisphaerica | exon |
| TCONS_00020730-exon-sc0000365-1575043694:308969..309322 | TCONS_00020730-exon-sc0000365-1575043694:308969..309322 | Clytia hemisphaerica | exon |
| TCONS_00020730-exon-sc0000365-1491911889:309694..309774 | TCONS_00020730-exon-sc0000365-1491911889:309694..309774 | Clytia hemisphaerica | exon |
| TCONS_00020730-exon-sc0000365-1510915933:309694..309774 | TCONS_00020730-exon-sc0000365-1510915933:309694..309774 | Clytia hemisphaerica | exon |
| TCONS_00020730-exon-sc0000365-1575043694:309694..309774 | TCONS_00020730-exon-sc0000365-1575043694:309694..309774 | Clytia hemisphaerica | exon |
| TCONS_00020730-exon-sc0000365-1491911889:310390..310507 | TCONS_00020730-exon-sc0000365-1491911889:310390..310507 | Clytia hemisphaerica | exon |
| TCONS_00020730-exon-sc0000365-1510915933:310390..310507 | TCONS_00020730-exon-sc0000365-1510915933:310390..310507 | Clytia hemisphaerica | exon |
| TCONS_00020730-exon-sc0000365-1575043694:310390..310507 | TCONS_00020730-exon-sc0000365-1575043694:310390..310507 | Clytia hemisphaerica | exon |
| TCONS_00020730-exon-sc0000365-1491911889:310822..311375 | TCONS_00020730-exon-sc0000365-1491911889:310822..311375 | Clytia hemisphaerica | exon |
| TCONS_00020730-exon-sc0000365-1510915933:310822..311375 | TCONS_00020730-exon-sc0000365-1510915933:310822..311375 | Clytia hemisphaerica | exon |
| TCONS_00020730-exon-sc0000365-1575043694:310822..311375 | TCONS_00020730-exon-sc0000365-1575043694:310822..311375 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000365 | supercontig | sc0000365:308969..311375 + |
Blast
The following BLAST results are available for this feature:
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