TCONS_00020732 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020732
Unique NameTCONS_00020732
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1892

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020732 ID=TCONS_00020732|Name=TCONS_00020732|organism=Clytia hemisphaerica|type=transcript|length=1892bp
TCCAAACTGAAACGTCCAAAAAACATACATCATATTCTAATACAATTATC
TATCAGTGAAATCTCTATCCAAGTTTTTCGATTTGCCTCAGCTATTTATG
TCGTTCGATATGATAATTATGAGGAACAACTGGGTTATCAAGTCACCAGA
ACTTTAACCGTTCAAGGTTTATGCGTATCTTATGTTTTGATTATGATCAT
GGTAGCGTTAGATCCTCTCCTAATCGTTGTTCTGAAGCTGAATTACCAAT
CTTTTGTAACGAAACAAAGGACCCAGTTACTCTTAGGATTATGCTGGTTC
ATCGGACTTGTATATGGTGGACTTAATTTCGTATTCACGTATAAAACAcg
tgaaaaaatatcaattacTTTTACTTTCCCGATCGTCACCACGTTATTTA
TTGTGTTTTCTGTAGCATCTTATAGCATGATTTACAAAGCCGTTCGAAAA
CANATGCCATCTGTTTAAATGGATGATAATTTCAACTGCTTAGTACATCC
CTGCGTCATAGACCTGCTGGGAACCTAACCTCACCAAAATTTTagcccgg
tgggaaaaatatccttCAATTTCAGGCCCACTGCAAAATTGACTTGATTT
CATCCACATTCGagattcaatgtttaaaatttgcGCTTCAAAACCACCTC
TACTAGATTTTTCAagcttgaaacaatagaatctatatccccattgagat
tttaaaggaaattttATCCCACTGTGGGGAAAAGTTTTACgggggctgtg
aaacaggggtgtcttAGTGGAGAAGCTCATAATTTATAACATCTTCTACA
GCAGGAATAGGAGGTCGAAAATAGGTGAAAAAATgatcttctatttttca
aaatgagatttCTTCCAGATTGATTGATCAAAAACCGGTGGAATCAATAA
CAAAATGGACAATACAAGCCACATTGCAAAGAATCAAACGTCACATCTTT
TCATTGGATTGGTCATCCTCGACATCACACTTCTGATCATCTCATCATTC
TTACACATCATTGGCGTCTTTCTCATGTCCAAACTGAAACGTCCAAAAAA
CATACATCATATTCTAATACAATTATCTATCAGTGAAATCTCTATCCAAG
TTTTTCGATTTGCCTCAGCTATTTATGTCGTTCGATATGATAATTATGAG
GAACAACTGGGTTATCAAGTCACCAGAACTTTAACCGTTCAAGGTTTATG
CGTATCTTATGTTTTGATTATGATCATGGTAGCGTTAGATCCTCTCCTAA
TCGTTGTTCTGAAGCTGAATTACCAATCTTTTGTAACGAAACAAAGGACC
CAGTTACTCTTAGGATTATGCTGGTTCATCGGACTTGTTTATGGCGGACT
TAATTTCGTATTCACGTATAAAACAcgtgaaaaaatatcaattacTTTTA
CTTTCCCGATCGTCACCACGTTATTTATTGTGTTTTCTGTAGCATCTTAT
AGCATGATTTACAAAGCCGTTCGAAAACAGGCTAAAAGTATTGCACGTGT
TTCTGTATCGAACATGAAAAGTAACGCACCGTCATTGAGATTTCGTGTAC
CCGTATTGATCACAttgacttttttcttattttgtttatCACCGTCAATT
ATTCAAGTCATCGTCGGATATCAGATTTCTAAGGAGTTTTTATTAAGCCT
AGGAATTTCTTTCAATGTTGGTTTTGTAGCAGATGCGTTGATTTACATGC
TTCTTCATCCAATGGTGAAAGGACTTTTAATGAACTTTATTTACCGAAGG
AAAAATATCACAAGCATTCGAAACATTTCCACCAGGTCTGCATCTTCACC
GAGGAGTGATAGACTTGAAACAAAAAAACTGTAAGGTAGTTGGTAATTTT
ATTAATTAACATATTACATATGATTCATGTTTTAAGTACAAG
Run BLAST on NCBI

protein sequence of TCONS_00020732-protein

>TCONS_00020732-protein ID=TCONS_00020732-protein|Name=TCONS_00020732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
MDNTSHIAKNQTSHLFIGLVILDITLLIISSFLHIIGVFLMSKLKRPKNI
HHILIQLSISEISIQVFRFASAIYVVRYDNYEEQLGYQVTRTLTVQGLCV
SYVLIMIMVALDPLLIVVLKLNYQSFVTKQRTQLLLGLCWFIGLVYGGLN
FVFTYKTREKISITFTFPIVTTLFIVFSVASYSMIYKAVRKQAKSIARVS
VSNMKSNAPSLRFRVPVLITLTFFLFCLSPSIIQVIVGYQISKEFLLSLG
ISFNVGFVADALIYMLLHPMVKGLLMNFIYRRKNITSIRNISTRSASSPR
SDRLETKKL
Run BLAST on NCBI

transcript from alignment at sc0000365:157766..160461-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020732 ID=TCONS_00020732|Name=TCONS_00020732|organism=Clytia hemisphaerica|type=transcript|length=2696bp|location=Sequence derived from alignment at sc0000365:157766..160461- (Clytia hemisphaerica)
TCCAAACTGAAACGTCCAAAAAACATACATCATATTCTAATACAATTATC
TATCAGTGAAATCTCTATCCAAGTTTTTCGATTTGCCTCAGCTATTTATG
TCGTTCGATATGATAATTATGAGGAACAACTGGGTTATCAAGTCACCAGA
ACTTTAACCGTTCAAGGTTTATGCGTATCTTATGTTTTGATTATGATCAT
GGTAGCGTTAGATCCTCTCCTAATCGTTGTTCTGAAGCTGAATTACCAAT
CTTTTGTAACGAAACAAAGGACCCAGTTACTCTTAGGATTATGCTGGTTC
ATCGGACTTGTATATGGTGGACTTAATTTCGTATTCACGTATAAAACACG
TGAAAAAATATCAATTACTTTTACTTTCCCGATCGTCACCACGTTATTTA
TTGTGTTTTCTGTAGCATCTTATAGCATGATTTACAAAGCCGTTCGAAAA
CANATGCCATCTGTTTAAATGGATGATAATTTCAACTGCTTAGTACATCC
CTGCGTCATAGACCTGCTGGGAACCTAACCTCACCAAAATTTTAGCCCGG
TGGGAAAAATATCCTTCAATTTCAGGCCCACTGCAAAATTGACTTGATTT
CATCCACATTCGAGATTCAATGTTTAAAATTTGCGCTTCAAAACCACCTC
TACTAGATTTTTCAAGCTTGAAACAATAGAATCTATATCCCCATTGAGAT
TTTAAAGGAAATTTTATCCCACTGTGGGGAAAAGTTTTACGGGGGCTGTG
AAACAGGGGTGTCTTAGTGGAGAAGCTCATAATTTATAACATCTTCTACA
GCAGGAATAGGAGGTCGAAAATAGGTGAAAAAATGATCTTCTATTTTTCA
AAATGAGATTTCTTCCAGATTGATTGATCAAAAACCGGTGGAATCAATAA
CAAAATGGACAATACAAGCCACATTGCAAAGAATCAAACGTCACATCTTT
TCATTGGATTGGTCATCCTCGACATCACACTTCTGATCATCTCATCATTC
TTACACATCATTGGCGTCTTTCTCATGTCCAAACTGAAACGTCCAAAAAA
CATACATCATATTCTAATACAATTATCTATCAGTGAAATCTCTATCCAAG
TTTTTCGATTTGCCTCAGCTATTTATGTCGTTCGATATGATAATTATGAG
GAACAACTGGGTTATCAAGTCACCAGAACTTTAACCGTTCAAGGTTTATG
CGTATCTTATGTTTTGATTATGATCATGGTAGCGTTAGATCCTCTCCTAA
TCGTTGTTCTGAAGCTGAATTACCAATCTTTTGTAACGAAACAAAGGACC
CAGTTACTCTTAGGATTATGCTGGTTCATCGGACTTGTTTATGGCGGACT
TAATTTCGTATTCACGTATAAAACACGTGAAAAAATATCAATTACTTTTA
CTTTCCCGATCGTCACCACGTTATTTATTGTGTTTTCTGTAGCATCTTAT
AGCATGATTTACAAAGCCGTTCGAAAACAGGCTAAAAGTATTGCACGTGT
TTCTGTATCGAACATGAAAAGTAACGCACCGTCATTGAGATTTCGTGTAC
CCGTATTGATCACATTGACTTTTTTCTTATTTTGTTTATCACCGTCAATT
ATTCAAGTCATCGTCGGATATCAGATTTCTAAGGAGTTTTTATTAAGCCT
AGGAATTTCTTTCAATGTTGGTTTTGTAGCAGATGCGTTGATTTACATGC
TTCTTCATCCAATGGTGAAAGGACTTTTAATGAACTTTATTTACCGAAGG
AAAAATATCACAAGCATTCGAAACATTTCCACCAGGTCTGCATCTTCACC
GAGGAGTGATAGACTTGAAACAAAAAAACTGTAAGGTAGTTGGTAATTTT
ATTAATTAACATATTACATATGATTCATTTTTTAAGTACAAGATATATGT
CTACGTTGAACAATAAAAGTAAATTACAGCAAAACCGTTACCCTCTTTTT
GATGTAGTAGTAACCCAGTAGGAATAGTTCTAGCCAACTCAAAAATAAGT
GGGAATTTATCATTATAAACCGAATGTTTTAAGCTTTCTTGGTTAAAAAG
TTATGACTTTCATGAAAAATAATTGTAANATTCTTTAACTTTCATTTTCA
CTGCAGAGATTTTTTTATCTTAGGAGATTATCACTGTGAAAAAATTTCAT
TAAAATATTTATTCAATATGAAGTTATGATACAAAGTTAATAAGTGATTG
ACCCCAAAAAAAAGCAAAAAACAGCGTTTTTAGACGTCAATCAGCTTATA
ACTTTGTTTGATATCTTTTGACTGAATGATTATTTTTGAGAATTTTTTTC
ACAGTGATGACGTTCGATGATTAAGGATTTACTTCAGTGAAAATGATAGT
TATAGCACTTTTCTAAACGATCTTCATTTTTTTCTTTTTCATTTTCATCT
TCATTTTTATAATCTTTTTAAAGTTTTTTTTATTTCAAATTGTTCCACTC
ACTAATATCTTTCCAATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTAATATCTTTCCAATGATACCAAATTTATAAAGATTGAAGAATT
CCTTCAAAAGTTATAGGTAAATGAAAAAAGAGTGCACACTTATCGTGAAT
AGACTTTAATTAATATATTACATATGATTCATGTTTTAAGTACAAG

Coding sequence (CDS) from alignment at sc0000365:157766..160461-

>TCONS_00020732 ID=TCONS_00020732|Name=TCONS_00020732|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at sc0000365:157766..160461- (Clytia hemisphaerica)
ATGGACAATACAAGCCACATTGCAAAGAATCAAACGTCACATCTTTTCAT
TGGATTGGTCATCCTCGACATCACACTTCTGATCATCTCATCATTCTTAC
ACATCATTGGCGTCTTTCTCATGTCCAAACTGAAACGTCCAAAAAACATA
CATCATATTCTAATACAATTATCTATCAGTGAAATCTCTATCCAAGTTTT
TCGATTTGCCTCAGCTATTTATGTCGTTCGATATGATAATTATGAGGAAC
AACTGGGTTATCAAGTCACCAGAACTTTAACCGTTCAAGGTTTATGCGTA
TCTTATGTTTTGATTATGATCATGGTAGCGTTAGATCCTCTCCTAATCGT
TGTTCTGAAGCTGAATTACCAATCTTTTGTAACGAAACAAAGGACCCAGT
TACTCTTAGGATTATGCTGGTTCATCGGACTTGTTTATGGCGGACTTAAT
TTCGTATTCACGTATAAAACACGTGAAAAAATATCAATTACTTTTACTTT
CCCGATCGTCACCACGTTATTTATTGTGTTTTCTGTAGCATCTTATAGCA
TGATTTACAAAGCCGTTCGAAAACAGGCTAAAAGTATTGCACGTGTTTCT
GTATCGAACATGAAAAGTAACGCACCGTCATTGAGATTTCGTGTACCCGT
ATTGATCACATTGACTTTTTTCTTATTTTGTTTATCACCGTCAATTATTC
AAGTCATCGTCGGATATCAGATTTCTAAGGAGTTTTTATTAAGCCTAGGA
ATTTCTTTCAATGTTGGTTTTGTAGCAGATGCGTTGATTTACATGCTTCT
TCATCCAATGGTGAAAGGACTTTTAATGAACTTTATTTACCGAAGGAAAA
ATATCACAAGCATTCGAAACATTTCCACCAGGTCTGCATCTTCACCGAGG
AGTGATAGACTTGAAACAAAAAAACTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011630XLOC_011630Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020732-proteinTCONS_00020732-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020732-exon-sc0000365-1575043694:158595..160461TCONS_00020732-exon-sc0000365-1575043694:158595..160461Clytia hemisphaericaexon
TCONS_00020732-exon-sc0000365-1575043694:157766..157790TCONS_00020732-exon-sc0000365-1575043694:157766..157790Clytia hemisphaericaexon
TCONS_00020732-exon-sc0000365-1510915933:158595..160461TCONS_00020732-exon-sc0000365-1510915933:158595..160461Clytia hemisphaericaexon
TCONS_00020732-exon-sc0000365-1510915933:157766..157790TCONS_00020732-exon-sc0000365-1510915933:157766..157790Clytia hemisphaericaexon
TCONS_00020732-exon-sc0000365-1491911889:158595..160461TCONS_00020732-exon-sc0000365-1491911889:158595..160461Clytia hemisphaericaexon
TCONS_00020732-exon-sc0000365-1491911889:157766..157790TCONS_00020732-exon-sc0000365-1491911889:157766..157790Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000365supercontigsc0000365:157766..160461 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.1054	0.0822255	0.0238679	0.0467021	0	0.0224639	0	0.0253723	0.0888188	0.0660099	0.0213569	0.0561568	0.294413	0.320311	0.0957596	0.141302	0.348144	0.437935	0.717074	0.820713	1.81394	1.81926	0.4834	0.747117	0.271593	0.302988	0	0.123393	0.304164	0.309895
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020732 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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